Strain Fitness in Pantoea sp. MT58 around IAI47_10200

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,154,355	-				-0.9
2,154,364	+				-1.6
2,154,386	+				-0.0
2,154,401	+				-1.6
2,154,401	+				-0.9
2,154,402	-				+0.1
2,154,402	-				-0.4
2,154,435	+				+0.5
2,154,455	+				-1.1
2,154,455	+				-0.8
2,154,456	-				+0.3
2,154,456	-				-0.8
2,154,522	+				-0.3
2,154,522	+				+0.3
2,154,523	-				-1.7
2,154,528	-				+0.0
2,154,576	+				-0.1
2,154,646	+				+0.0
2,154,647	-				-0.4
2,154,665	+				+0.1
2,154,706	+		IAI47_10195	0.10	+0.4
2,154,706	+		IAI47_10195	0.10	-0.1
2,154,706	+		IAI47_10195	0.10	-1.7
2,154,706	+		IAI47_10195	0.10	-1.3
2,154,706	+		IAI47_10195	0.10	-0.2
2,154,706	+		IAI47_10195	0.10	-0.7
2,154,707	-		IAI47_10195	0.11	+1.7
2,154,707	-		IAI47_10195	0.11	-0.1
2,154,707	-		IAI47_10195	0.11	+1.1
2,154,707	-		IAI47_10195	0.11	+1.4
2,154,707	-		IAI47_10195	0.11	+3.2
2,154,707	-		IAI47_10195	0.11	-1.1
2,154,707	-		IAI47_10195	0.11	+1.6
2,154,818	+		IAI47_10195	0.30	-0.1
2,154,827	+		IAI47_10195	0.31	+2.1
2,154,827	+		IAI47_10195	0.31	+1.5
2,154,827	+		IAI47_10195	0.31	-0.4
2,154,827	+		IAI47_10195	0.31	+0.4
2,154,827	+		IAI47_10195	0.31	-0.3
2,154,827	+		IAI47_10195	0.31	+1.9
2,154,828	-		IAI47_10195	0.31	-1.2
2,154,828	-		IAI47_10195	0.31	+1.0
2,154,851	+		IAI47_10195	0.35	+0.8
2,154,852	-		IAI47_10195	0.35	+1.3
2,154,919	+		IAI47_10195	0.47	+0.6
2,154,937	+		IAI47_10195	0.50	+1.3
2,155,005	+		IAI47_10195	0.62	-1.9
2,155,005	+		IAI47_10195	0.62	+0.9
2,155,005	+		IAI47_10195	0.62	-0.9
2,155,005	+		IAI47_10195	0.62	+0.7
2,155,038	-		IAI47_10195	0.67	-2.0
2,155,038	-		IAI47_10195	0.67	+2.0
2,155,038	-		IAI47_10195	0.67	-0.8
2,155,038	-		IAI47_10195	0.67	+1.7
2,155,080	-		IAI47_10195	0.74	-0.9
2,155,124	+		IAI47_10195	0.82	+0.3
2,155,124	+		IAI47_10195	0.82	+0.5
2,155,124	+		IAI47_10195	0.82	-0.0
2,155,124	+		IAI47_10195	0.82	+0.5
2,155,124	+		IAI47_10195	0.82	+1.4
2,155,124	+		IAI47_10195	0.82	-0.0
2,155,125	-		IAI47_10195	0.82	-0.7
2,155,125	-		IAI47_10195	0.82	-2.3
2,155,125	-		IAI47_10195	0.82	-0.5
2,155,125	-		IAI47_10195	0.82	+0.6
2,155,125	-		IAI47_10195	0.82	+0.3
2,155,125	-		IAI47_10195	0.82	-1.0
2,155,125	-		IAI47_10195	0.82	+1.3
2,155,125	-		IAI47_10195	0.82	-1.2
2,155,125	-		IAI47_10195	0.82	-2.6
2,155,144	+		IAI47_10195	0.85	-1.8
2,155,144	+		IAI47_10195	0.85	+0.1
2,155,144	+		IAI47_10195	0.85	+0.5
2,155,144	+		IAI47_10195	0.85	-2.1
2,155,177	+				+0.3
2,155,195	-				-0.3
2,155,211	+				+1.1
2,155,211	+				-0.6
2,155,241	+				+0.0
2,155,285	+				+0.7
2,155,334	+				+0.8
2,155,335	-				+0.2
2,155,335	-				-1.7
2,155,335	-				+0.3
2,155,335	-				-0.8
2,155,337	-				-1.3
2,155,347	-				-1.6
2,155,349	-				+0.9
2,155,444	+				+0.8
2,155,444	+				-1.0
2,155,444	+				-0.9
2,155,445	-				-0.1
2,155,445	-				-1.7
2,155,445	-				+1.2
2,155,486	+				-0.0
2,155,596	-		IAI47_10200	0.11	-0.6
2,155,646	-		IAI47_10200	0.13	-0.2
2,155,671	+		IAI47_10200	0.14	-0.4
2,155,671	+		IAI47_10200	0.14	-0.7
2,155,672	-		IAI47_10200	0.14	+1.2
2,155,672	-		IAI47_10200	0.14	+1.4
2,155,674	-		IAI47_10200	0.14	-0.5
2,155,674	-		IAI47_10200	0.14	-0.6
2,155,674	-		IAI47_10200	0.14	-0.4
2,155,674	-		IAI47_10200	0.14	-2.1
2,155,674	-		IAI47_10200	0.14	-0.4
2,155,691	+		IAI47_10200	0.15	-0.9
2,155,691	+		IAI47_10200	0.15	+1.0
2,155,691	+		IAI47_10200	0.15	-1.3
2,155,691	+		IAI47_10200	0.15	-0.4
2,155,691	+		IAI47_10200	0.15	-0.4
2,155,691	+		IAI47_10200	0.15	-1.0
2,155,691	+		IAI47_10200	0.15	+1.2
2,155,691	+		IAI47_10200	0.15	-2.2
2,155,692	-		IAI47_10200	0.15	+0.6
2,155,692	-		IAI47_10200	0.15	-0.5
2,155,692	-		IAI47_10200	0.15	+1.3
2,155,696	+		IAI47_10200	0.15	+1.4
2,155,696	+		IAI47_10200	0.15	-1.5
2,155,696	+		IAI47_10200	0.15	+1.4
2,155,697	-		IAI47_10200	0.15	+0.2
2,155,697	-		IAI47_10200	0.15	+0.3
2,155,698	+		IAI47_10200	0.16	-1.3
2,155,698	+		IAI47_10200	0.16	+1.4
2,155,698	+		IAI47_10200	0.16	+0.0
2,155,698	+		IAI47_10200	0.16	+0.9
2,155,698	+		IAI47_10200	0.16	-2.3
2,155,698	+		IAI47_10200	0.16	-0.1
2,155,698	+		IAI47_10200	0.16	+1.9
2,155,699	-		IAI47_10200	0.16	+2.0
2,155,739	+		IAI47_10200	0.17	+1.4
2,155,739	+		IAI47_10200	0.17	-0.1
2,155,759	+		IAI47_10200	0.18	+1.0
2,155,760	-		IAI47_10200	0.18	+1.0
2,155,760	-		IAI47_10200	0.18	-0.9
2,155,794	+		IAI47_10200	0.20	-0.9
2,155,795	-		IAI47_10200	0.20	-0.4
2,155,795	-		IAI47_10200	0.20	+0.7
2,155,818	+		IAI47_10200	0.21	+1.0
2,155,818	+		IAI47_10200	0.21	-1.6
2,155,860	+		IAI47_10200	0.23	-0.1
2,155,860	+		IAI47_10200	0.23	-0.1
2,155,861	-		IAI47_10200	0.23	-0.2
2,155,951	-		IAI47_10200	0.27	-0.6
2,155,951	-		IAI47_10200	0.27	-1.6
2,156,149	+		IAI47_10200	0.35	-1.3
2,156,149	+		IAI47_10200	0.35	-0.6
2,156,150	-		IAI47_10200	0.35	-0.1
2,156,150	-		IAI47_10200	0.35	-1.6
2,156,150	-		IAI47_10200	0.35	+2.0
2,156,150	-		IAI47_10200	0.35	+1.2
2,156,158	+		IAI47_10200	0.36	-1.5
2,156,159	-		IAI47_10200	0.36	+2.4
2,156,159	-		IAI47_10200	0.36	+1.5
2,156,159	-		IAI47_10200	0.36	-0.1
2,156,261	+		IAI47_10200	0.40	+0.1
2,156,298	+		IAI47_10200	0.42	+0.3
2,156,298	+		IAI47_10200	0.42	-0.4
2,156,299	-		IAI47_10200	0.42	+0.6
2,156,309	+		IAI47_10200	0.42	-1.2
2,156,309	+		IAI47_10200	0.42	-1.5
2,156,309	+		IAI47_10200	0.42	+0.7
2,156,310	-		IAI47_10200	0.42	-0.3
2,156,310	-		IAI47_10200	0.42	+0.2
2,156,352	+		IAI47_10200	0.44	-0.8
2,156,352	+		IAI47_10200	0.44	-1.3
2,156,352	+		IAI47_10200	0.44	-2.1
2,156,353	-		IAI47_10200	0.44	-1.4
2,156,353	-		IAI47_10200	0.44	+1.2
2,156,441	+		IAI47_10200	0.48	-0.0
2,156,441	+		IAI47_10200	0.48	-0.0
2,156,442	-		IAI47_10200	0.48	+0.4
2,156,482	-		IAI47_10200	0.50	+1.6
2,156,511	+		IAI47_10200	0.51	-1.9
2,156,623	-		IAI47_10200	0.56	+0.2
2,156,633	+		IAI47_10200	0.57	+0.0
2,156,634	-		IAI47_10200	0.57	-0.6
2,156,634	-		IAI47_10200	0.57	-1.3
2,156,634	-		IAI47_10200	0.57	+0.2
2,156,689	+		IAI47_10200	0.59	+1.3
2,156,694	+		IAI47_10200	0.59	-1.1
2,156,694	+		IAI47_10200	0.59	+0.9
2,156,694	+		IAI47_10200	0.59	-0.6
2,156,694	+		IAI47_10200	0.59	-0.2
2,156,694	+		IAI47_10200	0.59	+0.1
2,156,695	-		IAI47_10200	0.59	+0.7
2,156,695	-		IAI47_10200	0.59	-0.8
2,156,695	-		IAI47_10200	0.59	+1.4
2,156,698	+		IAI47_10200	0.59	+0.0
2,156,699	-		IAI47_10200	0.59	-0.9
2,156,759	+		IAI47_10200	0.62	-1.6
2,156,759	+		IAI47_10200	0.62	+1.0
2,156,759	+		IAI47_10200	0.62	+0.1
2,156,760	-		IAI47_10200	0.62	-0.9
2,156,760	-		IAI47_10200	0.62	-0.5
2,156,840	-		IAI47_10200	0.66	+0.2
2,156,896	+		IAI47_10200	0.68	+0.1
2,156,896	+		IAI47_10200	0.68	+1.4
2,156,897	-		IAI47_10200	0.68	+2.8
2,157,060	+		IAI47_10200	0.75	+0.7
2,157,060	+		IAI47_10200	0.75	+0.1
2,157,060	+		IAI47_10200	0.75	+0.4
2,157,060	+		IAI47_10200	0.75	+1.5
2,157,061	-		IAI47_10200	0.75	+0.6
2,157,061	-		IAI47_10200	0.75	+1.4
2,157,063	+		IAI47_10200	0.75	+0.1
2,157,063	+		IAI47_10200	0.75	-0.6
2,157,063	+		IAI47_10200	0.75	-1.0
2,157,064	-		IAI47_10200	0.75	+0.9
2,157,064	-		IAI47_10200	0.75	+0.1
2,157,075	-		IAI47_10200	0.76	-1.9
2,157,078	-		IAI47_10200	0.76	+0.1
2,157,078	-		IAI47_10200	0.76	-1.9
2,157,078	-		IAI47_10200	0.76	+0.1
2,157,178	+		IAI47_10200	0.81	+0.6
2,157,178	+		IAI47_10200	0.81	+0.9
2,157,240	-		IAI47_10200	0.83	-0.3
2,157,282	+		IAI47_10200	0.85	-0.7
2,157,306	+		IAI47_10200	0.86	-1.4
2,157,307	-		IAI47_10200	0.86	+1.3
2,157,599	-				-1.4
2,157,641	-				+0.1
2,157,689	+				+0.2
2,157,690	-				+0.1
2,157,690	-				+1.9
2,157,899	+		IAI47_10205	0.24	-0.2
2,157,899	+		IAI47_10205	0.24	-1.3
2,157,900	-		IAI47_10205	0.24	+0.3
2,157,900	-		IAI47_10205	0.24	-0.4
2,157,901	+		IAI47_10205	0.24	-0.5
2,157,902	-		IAI47_10205	0.25	+1.2
2,157,902	-		IAI47_10205	0.25	-1.1
2,157,902	-		IAI47_10205	0.25	-1.5
2,157,902	-		IAI47_10205	0.25	-0.9
2,157,902	-		IAI47_10205	0.25	+1.2
2,157,908	+		IAI47_10205	0.25	-0.7
2,157,909	-		IAI47_10205	0.25	-0.1
2,157,930	+		IAI47_10205	0.27	+0.0
2,157,930	+		IAI47_10205	0.27	+0.4
2,157,931	-		IAI47_10205	0.27	+0.6
2,158,010	+		IAI47_10205	0.34	+1.1
2,158,051	+		IAI47_10205	0.38	+0.8
2,158,051	+		IAI47_10205	0.38	-2.9
2,158,051	+		IAI47_10205	0.38	+0.4
2,158,052	-		IAI47_10205	0.38	+0.0
2,158,052	-		IAI47_10205	0.38	-0.4
2,158,052	-		IAI47_10205	0.38	+1.4
2,158,052	-		IAI47_10205	0.38	+3.9
2,158,052	-		IAI47_10205	0.38	-1.5
2,158,054	+		IAI47_10205	0.38	-0.4
2,158,055	-		IAI47_10205	0.38	-0.5
2,158,055	-		IAI47_10205	0.38	-0.7
2,158,055	-		IAI47_10205	0.38	-0.7
2,158,115	-		IAI47_10205	0.43	+1.5
2,158,179	-		IAI47_10205	0.49	-0.7
2,158,179	-		IAI47_10205	0.49	-0.4
2,158,195	+		IAI47_10205	0.50	-1.1
2,158,196	-		IAI47_10205	0.50	+1.4
2,158,241	+		IAI47_10205	0.54	-0.4
2,158,242	-		IAI47_10205	0.54	-0.4
2,158,260	-		IAI47_10205	0.56	-0.9
2,158,277	+		IAI47_10205	0.57	+1.3
2,158,277	+		IAI47_10205	0.57	-0.0
2,158,278	-		IAI47_10205	0.57	+0.6
2,158,278	-		IAI47_10205	0.57	-1.7
2,158,278	-		IAI47_10205	0.57	-2.1
2,158,425	-		IAI47_10205	0.70	-1.3
2,158,499	+		IAI47_10205	0.77	+0.6
2,158,499	+		IAI47_10205	0.77	-1.6
2,158,499	+		IAI47_10205	0.77	-0.9
2,158,501	+		IAI47_10205	0.77	-0.1
2,158,501	+		IAI47_10205	0.77	+0.1
2,158,501	+		IAI47_10205	0.77	-0.1
2,158,501	+		IAI47_10205	0.77	-0.4
2,158,502	-		IAI47_10205	0.77	-0.6