Strain Fitness in Pantoea sp. MT58 around IAI47_09775

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,067,627	+		IAI47_09765	0.73	+0.4
2,067,627	+		IAI47_09765	0.73	+1.7
2,067,627	+				+0.3
2,067,627	+		IAI47_09765	0.73	-0.6
2,067,627	+		IAI47_09765	0.73	-0.1
2,067,628	-		IAI47_09765	0.73	+0.7
2,067,628	-		IAI47_09765	0.73	+1.4
2,067,628	-		IAI47_09765	0.73	+0.0
2,067,632	+		IAI47_09765	0.73	-1.4
2,067,632	+		IAI47_09765	0.73	-0.6
2,067,632	+		IAI47_09765	0.73	+0.8
2,067,632	+		IAI47_09765	0.73	-0.2
2,067,632	+		IAI47_09765	0.73	+2.4
2,067,632	+		IAI47_09765	0.73	-1.0
2,067,633	-		IAI47_09765	0.73	+0.2
2,067,633	-		IAI47_09765	0.73	-0.1
2,067,633	-		IAI47_09765	0.73	+1.7
2,067,633	-		IAI47_09765	0.73	+0.9
2,067,633	-		IAI47_09765	0.73	-0.6
2,067,633	-		IAI47_09765	0.73	+2.0
2,067,633	-		IAI47_09765	0.73	+1.1
2,067,669	+		IAI47_09765	0.77	-1.1
2,067,669	+		IAI47_09765	0.77	-1.5
2,067,670	-		IAI47_09765	0.77	-0.1
2,067,670	-		IAI47_09765	0.77	-1.3
2,067,670	-		IAI47_09765	0.77	-0.3
2,067,670	-		IAI47_09765	0.77	-0.4
2,067,685	+		IAI47_09765	0.78	-1.5
2,067,685	+		IAI47_09765	0.78	-0.1
2,067,685	+		IAI47_09765	0.78	-0.1
2,067,686	-		IAI47_09765	0.78	-0.6
2,067,686	-		IAI47_09765	0.78	-1.0
2,067,686	-		IAI47_09765	0.78	-0.3
2,067,686	-		IAI47_09765	0.78	-0.8
2,067,686	-		IAI47_09765	0.78	-0.3
2,067,686	-		IAI47_09765	0.78	+1.1
2,067,686	-		IAI47_09765	0.78	+0.4
2,067,722	+		IAI47_09765	0.81	+1.1
2,067,728	+		IAI47_09765	0.82	-0.7
2,067,729	-		IAI47_09765	0.82	+0.3
2,067,729	-		IAI47_09765	0.82	+1.0
2,067,729	-		IAI47_09765	0.82	+0.2
2,067,849	+				+0.4
2,067,850	-				+0.0
2,067,882	-				-2.4
2,067,882	-				+0.6
2,067,882	-				+2.1
2,067,902	+				-0.6
2,067,929	+				+0.2
2,067,929	+				+0.3
2,067,929	+				-0.5
2,067,929	+				+1.4
2,067,929	+				+1.4
2,067,930	-				+2.4
2,067,930	-				-1.1
2,068,036	+		IAI47_09770	0.16	+0.9
2,068,036	+		IAI47_09770	0.16	-1.3
2,068,036	+		IAI47_09770	0.16	-1.0
2,068,036	+		IAI47_09770	0.16	+1.4
2,068,036	+		IAI47_09770	0.16	-1.5
2,068,037	-		IAI47_09770	0.16	-0.7
2,068,037	-		IAI47_09770	0.16	+1.2
2,068,037	-		IAI47_09770	0.16	-0.7
2,068,037	-		IAI47_09770	0.16	-0.1
2,068,037	-		IAI47_09770	0.16	+0.6
2,068,042	+		IAI47_09770	0.17	+0.1
2,068,042	+		IAI47_09770	0.17	+0.7
2,068,043	-		IAI47_09770	0.17	+0.4
2,068,043	-		IAI47_09770	0.17	-1.8
2,068,141	+		IAI47_09770	0.32	+3.4
2,068,300	-		IAI47_09770	0.56	+0.9
2,068,300	-		IAI47_09770	0.56	-0.7
2,068,300	-		IAI47_09770	0.56	-0.6
2,068,390	+		IAI47_09770	0.70	-0.8
2,068,391	-		IAI47_09770	0.70	+0.2
2,068,556	-				+0.6
2,068,566	+				+1.2
2,068,566	+				+2.3
2,068,566	+				-0.8
2,068,566	+				+0.6
2,068,566	+				+3.0
2,068,567	-				-0.6
2,068,567	-				+1.2
2,068,567	-				+0.9
2,068,567	-				-2.0
2,068,567	-				+0.8
2,068,593	+				-0.4
2,068,593	+				+1.7
2,068,593	+				+1.1
2,068,594	-				-0.1
2,068,594	-				-1.7
2,068,594	-				-2.0
2,068,594	-				+1.0
2,068,594	-				+0.6
2,068,594	-				+0.7
2,068,715	-		IAI47_09775	0.13	+0.2
2,068,780	-		IAI47_09775	0.21	-1.6
2,068,798	+		IAI47_09775	0.23	+2.4
2,068,798	+		IAI47_09775	0.23	-0.3
2,068,799	-		IAI47_09775	0.23	+0.7
2,068,799	-		IAI47_09775	0.23	-0.1
2,068,832	-		IAI47_09775	0.26	+0.3
2,068,851	+		IAI47_09775	0.28	+0.6
2,068,851	+		IAI47_09775	0.28	-0.7
2,068,851	+		IAI47_09775	0.28	-0.9
2,068,852	-		IAI47_09775	0.29	-0.4
2,068,894	-		IAI47_09775	0.33	+0.3
2,068,946	-		IAI47_09775	0.39	-0.9
2,068,946	-		IAI47_09775	0.39	+0.4
2,068,947	+		IAI47_09775	0.39	-1.4
2,068,948	-		IAI47_09775	0.39	-2.0
2,069,017	+		IAI47_09775	0.47	-0.4
2,069,017	+		IAI47_09775	0.47	+0.3
2,069,121	+		IAI47_09775	0.58	+0.6
2,069,121	+		IAI47_09775	0.58	-1.3
2,069,122	-		IAI47_09775	0.58	+1.9
2,069,122	-		IAI47_09775	0.58	-0.6
2,069,122	-		IAI47_09775	0.58	-0.9
2,069,122	-		IAI47_09775	0.58	-0.6
2,069,122	-		IAI47_09775	0.58	-0.5
2,069,122	-		IAI47_09775	0.58	+0.3
2,069,125	+		IAI47_09775	0.58	+1.1
2,069,125	+		IAI47_09775	0.58	+0.5
2,069,125	+		IAI47_09775	0.58	-0.7
2,069,125	+		IAI47_09775	0.58	+0.2
2,069,125	+		IAI47_09775	0.58	+0.1
2,069,125	+		IAI47_09775	0.58	-0.3
2,069,125	+		IAI47_09775	0.58	-1.7
2,069,125	+		IAI47_09775	0.58	-2.4
2,069,125	+		IAI47_09775	0.58	+0.4
2,069,125	+		IAI47_09775	0.58	-2.1
2,069,125	+		IAI47_09775	0.58	+0.9
2,069,125	+		IAI47_09775	0.58	+1.4
2,069,125	+		IAI47_09775	0.58	-1.6
2,069,125	+		IAI47_09775	0.58	+2.0
2,069,126	-		IAI47_09775	0.59	+1.0
2,069,126	-		IAI47_09775	0.59	-0.1
2,069,126	-		IAI47_09775	0.59	-1.2
2,069,126	-		IAI47_09775	0.59	-0.8
2,069,126	-		IAI47_09775	0.59	+1.4
2,069,126	-		IAI47_09775	0.59	-1.2
2,069,126	-		IAI47_09775	0.59	-1.5
2,069,126	-		IAI47_09775	0.59	+1.0
2,069,126	-		IAI47_09775	0.59	+0.8
2,069,193	+		IAI47_09775	0.66	+1.4
2,069,193	+		IAI47_09775	0.66	+1.6
2,069,194	-		IAI47_09775	0.66	-0.0
2,069,194	-		IAI47_09775	0.66	-0.9
2,069,224	+		IAI47_09775	0.69	-0.7
2,069,224	+		IAI47_09775	0.69	+1.6
2,069,224	+		IAI47_09775	0.69	+1.3
2,069,236	+		IAI47_09775	0.71	-0.3
2,069,236	+		IAI47_09775	0.71	-0.3
2,069,237	-		IAI47_09775	0.71	-1.4
2,069,254	+		IAI47_09775	0.73	-0.7
2,069,254	+		IAI47_09775	0.73	+0.2
2,069,255	-		IAI47_09775	0.73	+0.9
2,069,255	-		IAI47_09775	0.73	+0.6
2,069,256	+		IAI47_09775	0.73	+0.6
2,069,257	-		IAI47_09775	0.73	+0.0
2,069,257	-		IAI47_09775	0.73	-0.5
2,069,257	-		IAI47_09775	0.73	+1.9
2,069,257	-		IAI47_09775	0.73	+0.5
2,069,257	-		IAI47_09775	0.73	-0.9
2,069,269	+		IAI47_09775	0.74	+1.0
2,069,269	+		IAI47_09775	0.74	+0.7
2,069,269	+		IAI47_09775	0.74	+0.4
2,069,269	+		IAI47_09775	0.74	-2.1
2,069,269	+		IAI47_09775	0.74	+2.6
2,069,270	-		IAI47_09775	0.74	-0.8
2,069,270	-		IAI47_09775	0.74	-0.9
2,069,296	+		IAI47_09775	0.77	-1.0
2,069,296	+		IAI47_09775	0.77	+0.9
2,069,297	-		IAI47_09775	0.77	-0.6
2,069,297	-		IAI47_09775	0.77	-1.2
2,069,297	-		IAI47_09775	0.77	-0.1
2,069,308	+		IAI47_09775	0.79	+0.9
2,069,309	-		IAI47_09775	0.79	+0.1
2,069,317	+		IAI47_09775	0.79	-1.6
2,069,318	-		IAI47_09775	0.80	-1.7
2,069,320	+		IAI47_09775	0.80	-0.6
2,069,321	-		IAI47_09775	0.80	-1.7
2,069,321	-		IAI47_09775	0.80	-1.0
2,069,326	+		IAI47_09775	0.80	-0.3
2,069,327	-		IAI47_09775	0.81	-0.8
2,069,327	-		IAI47_09775	0.81	+3.4
2,069,383	+		IAI47_09775	0.87	-1.1
2,069,383	+		IAI47_09775	0.87	+0.1
2,069,383	+		IAI47_09775	0.87	+0.5
2,069,383	+		IAI47_09775	0.87	-0.7
2,069,384	-		IAI47_09775	0.87	-0.3
2,069,384	-		IAI47_09775	0.87	-0.8
2,069,384	-		IAI47_09775	0.87	+1.1
2,069,384	-		IAI47_09775	0.87	+0.1
2,069,384	-		IAI47_09775	0.87	+3.0
2,069,384	-		IAI47_09775	0.87	-0.5
2,069,384	-		IAI47_09775	0.87	-0.0
2,069,498	+				+0.4
2,069,504	+				+0.1
2,069,504	+				+1.9
2,069,504	+				+0.2
2,069,504	+				-0.5
2,069,504	+				+1.5
2,069,505	-				+0.1
2,069,572	-				+0.3
2,069,572	-				-0.5
2,069,572	-				+0.0
2,069,639	+		IAI47_09780	0.16	+0.8
2,069,639	+		IAI47_09780	0.16	+0.6
2,069,639	+		IAI47_09780	0.16	+0.1
2,069,639	+		IAI47_09780	0.16	-0.6
2,069,639	+		IAI47_09780	0.16	-0.7
2,069,640	-		IAI47_09780	0.17	-1.7
2,069,640	-		IAI47_09780	0.17	+0.4
2,069,640	-		IAI47_09780	0.17	+1.8
2,069,640	-		IAI47_09780	0.17	-1.8
2,069,640	-		IAI47_09780	0.17	+0.2
2,069,703	+		IAI47_09780	0.25	-0.9
2,069,932	+		IAI47_09780	0.57	+3.1
2,069,933	-		IAI47_09780	0.57	-0.6
2,069,999	+		IAI47_09780	0.67	+3.0
2,069,999	+		IAI47_09780	0.67	-0.1
2,069,999	+		IAI47_09780	0.67	-0.3
2,069,999	+		IAI47_09780	0.67	+2.4
2,069,999	+		IAI47_09780	0.67	+0.4
2,070,000	-		IAI47_09780	0.67	-1.5
2,070,000	-		IAI47_09780	0.67	-0.3
2,070,051	+		IAI47_09780	0.74	+1.4
2,070,051	+		IAI47_09780	0.74	+2.5
2,070,052	-		IAI47_09780	0.74	-1.0
2,070,052	-		IAI47_09780	0.74	+0.6
2,070,088	+		IAI47_09780	0.79	+1.1
2,070,088	+		IAI47_09780	0.79	+0.7
2,070,089	-		IAI47_09780	0.79	+1.1
2,070,089	-		IAI47_09780	0.79	+1.6
2,070,113	+		IAI47_09780	0.83	+0.2
2,070,114	-		IAI47_09780	0.83	+0.2
2,070,129	+		IAI47_09780	0.85	+0.1
2,070,130	-		IAI47_09780	0.85	+0.7
2,070,155	-		IAI47_09780	0.88	+0.8
2,070,155	-		IAI47_09780	0.88	+0.2
2,070,155	-		IAI47_09780	0.88	-0.0
2,070,270	+				+3.4
2,070,270	+				+0.8
2,070,271	-				+2.1
2,070,271	-				-0.6
2,070,272	+				+0.4
2,070,272	+				-0.4
2,070,272	+				+1.6
2,070,272	+				-1.3
2,070,272	+				+0.7
2,070,272	+				-2.7
2,070,273	-				+0.0
2,070,273	-				+2.0
2,070,273	-				-1.1
2,070,273	-				-0.1
2,070,273	-				-0.0
2,070,273	-				-1.1
2,070,273	-				+0.3
2,070,273	-				+0.9
2,070,281	+				+0.7
2,070,282	-				+0.2
2,070,282	-				+0.3
2,070,282	-				+0.1
2,070,282	-				+1.4
2,070,349	+				+1.4
2,070,349	+				-0.1
2,070,350	-				-1.4
2,070,383	+				+5.3
2,070,390	+				-0.8
2,070,391	-				-1.7
2,070,406	+				-0.7
2,070,406	+				+1.7
2,070,406	+				-2.7
2,070,407	-				-1.6
2,070,407	-				+0.0
2,070,407	-				+0.9
2,070,407	-				+2.2
2,070,407	-				-0.8
2,070,407	-				+2.0
2,070,407	-				-1.4
2,070,408	+				+1.0
2,070,408	+				+1.2
2,070,409	-				-2.1
2,070,438	+				-1.2
2,070,439	-				-0.4
2,070,445	+				+0.1
2,070,446	-				+0.8
2,070,446	-				-0.9
2,070,446	-				-1.3
2,070,446	-				+0.9
2,070,447	+				-1.0
2,070,447	+				+1.3
2,070,447	+				-0.9
2,070,447	+				-0.3
2,070,448	-				-0.4
2,070,448	-				+0.3
2,070,448	-				-1.1
2,070,448	-				+1.1
2,070,458	+				+2.7
2,070,458	+				+2.8
2,070,481	-				-0.8
2,070,490	+				+1.4
2,070,491	-				+0.4