Strain Fitness in Pantoea sp. MT58 around IAI47_07925

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,677,522	+				+1.4
1,677,522	+				-0.5
1,677,522	+				-1.2
1,677,522	+				-0.8
1,677,523	-				-0.2
1,677,523	-				-0.6
1,677,531	+				-0.3
1,677,531	+				-1.6
1,677,531	+				-2.7
1,677,532	-				+0.0
1,677,532	-				-0.0
1,677,532	-				-0.1
1,677,532	-				+1.3
1,677,536	+				-1.1
1,677,537	-				-1.4
1,677,537	-				+0.3
1,677,551	+				+0.0
1,677,551	+				-0.2
1,677,552	-				+1.3
1,677,613	+				-0.2
1,677,613	+				+0.6
1,677,613	+				-0.4
1,677,614	-				+0.4
1,677,614	-				+3.0
1,677,614	-				+0.3
1,677,662	+				-0.4
1,677,662	+				+3.1
1,677,663	-				+1.0
1,677,663	-				+1.4
1,677,663	-				-0.3
1,677,694	+				+2.0
1,677,694	+				-0.8
1,677,695	-				+1.2
1,677,695	-				-0.0
1,677,775	+		IAI47_07915	0.17	-0.7
1,677,775	+		IAI47_07915	0.17	-0.8
1,677,775	+		IAI47_07915	0.17	-1.0
1,677,775	+		IAI47_07915	0.17	+0.7
1,677,775	+		IAI47_07915	0.17	-0.6
1,677,776	-		IAI47_07915	0.17	-0.9
1,677,776	-		IAI47_07915	0.17	-0.2
1,677,776	-		IAI47_07915	0.17	-0.8
1,677,914	+		IAI47_07915	0.46	-0.7
1,677,914	+		IAI47_07915	0.46	+1.4
1,677,914	+		IAI47_07915	0.46	+0.2
1,677,914	+		IAI47_07915	0.46	+0.3
1,677,914	+		IAI47_07915	0.46	-0.1
1,677,914	+		IAI47_07915	0.46	+1.0
1,677,914	+		IAI47_07915	0.46	+0.5
1,677,914	+		IAI47_07915	0.46	+1.3
1,677,915	-		IAI47_07915	0.46	+0.2
1,677,915	-		IAI47_07915	0.46	+0.5
1,677,915	-		IAI47_07915	0.46	-0.0
1,677,922	+		IAI47_07915	0.47	+0.5
1,677,922	+		IAI47_07915	0.47	-0.6
1,677,923	-		IAI47_07915	0.47	-0.2
1,677,923	-		IAI47_07915	0.47	+0.0
1,677,992	+		IAI47_07915	0.62	+1.1
1,677,992	+		IAI47_07915	0.62	-1.5
1,677,992	+		IAI47_07915	0.62	-0.8
1,677,993	-		IAI47_07915	0.62	-0.6
1,677,993	-		IAI47_07915	0.62	-1.7
1,677,993	-		IAI47_07915	0.62	+1.5
1,678,026	+		IAI47_07915	0.69	+1.6
1,678,026	+		IAI47_07915	0.69	-0.6
1,678,026	+		IAI47_07915	0.69	+0.2
1,678,026	+		IAI47_07915	0.69	+0.4
1,678,026	+		IAI47_07915	0.69	+0.5
1,678,027	-		IAI47_07915	0.69	+2.4
1,678,051	-		IAI47_07915	0.74	+0.4
1,678,148	-				+1.1
1,678,148	-				+0.4
1,678,148	-				+0.9
1,678,157	+				-0.9
1,678,157	+				+1.7
1,678,157	+				+0.8
1,678,157	+				+1.7
1,678,158	-				-1.1
1,678,158	-				+0.8
1,678,173	-				-1.8
1,678,184	+				+2.6
1,678,184	+				+2.8
1,678,184	+				+0.1
1,678,184	+				+0.2
1,678,184	+				-0.4
1,678,184	+				+0.7
1,678,184	+				-0.7
1,678,184	+				+0.5
1,678,184	+				-0.2
1,678,184	+				-0.8
1,678,184	+				-0.4
1,678,184	+				+2.6
1,678,185	-				-0.5
1,678,185	-				+1.0
1,678,185	-				+0.4
1,678,185	-				-0.1
1,678,185	-				+0.5
1,678,185	-				+2.6
1,678,185	-				+1.0
1,678,223	+				-0.7
1,678,249	-				+0.9
1,678,259	+		IAI47_07920	0.12	+1.2
1,678,259	+		IAI47_07920	0.12	+1.4
1,678,259	+		IAI47_07920	0.12	+0.3
1,678,259	+		IAI47_07920	0.12	+0.4
1,678,260	-		IAI47_07920	0.12	+1.2
1,678,260	-		IAI47_07920	0.12	+4.1
1,678,310	+		IAI47_07920	0.30	-2.2
1,678,327	+		IAI47_07920	0.37	-0.0
1,678,327	+		IAI47_07920	0.37	+2.0
1,678,327	+		IAI47_07920	0.37	+0.0
1,678,327	+		IAI47_07920	0.37	+1.9
1,678,327	+		IAI47_07920	0.37	+0.7
1,678,328	-		IAI47_07920	0.37	-1.8
1,678,328	-		IAI47_07920	0.37	+1.4
1,678,328	-		IAI47_07920	0.37	-0.9
1,678,328	-		IAI47_07920	0.37	+1.0
1,678,376	+		IAI47_07920	0.54	-1.6
1,678,376	+		IAI47_07920	0.54	-1.8
1,678,377	-		IAI47_07920	0.55	-1.1
1,678,486	+				-0.8
1,678,486	+				+1.0
1,678,486	+				-1.3
1,678,487	-				-0.0
1,678,487	-				+0.5
1,678,499	+				+0.2
1,678,499	+				-1.0
1,678,500	-				+0.6
1,678,500	-				-0.8
1,678,505	+				-1.3
1,678,529	+				+2.2
1,678,529	+				-1.7
1,678,538	+				+0.1
1,678,538	+				-0.3
1,678,539	-				-0.3
1,678,539	-				-0.6
1,678,539	-				+1.0
1,678,539	-				+1.4
1,678,539	-				-0.4
1,678,548	+				+0.9
1,678,548	+				+0.6
1,678,548	+				-0.2
1,678,549	-				-0.0
1,678,569	+				+0.9
1,678,570	-				-0.2
1,678,771	-		IAI47_07925	0.28	+3.0
1,678,801	+		IAI47_07925	0.32	+2.2
1,678,801	+		IAI47_07925	0.32	-0.6
1,678,802	-		IAI47_07925	0.32	-1.5
1,678,802	-		IAI47_07925	0.32	-0.6
1,678,811	-		IAI47_07925	0.33	+1.6
1,678,841	+		IAI47_07925	0.36	-0.7
1,678,841	+		IAI47_07925	0.36	+0.0
1,678,841	+		IAI47_07925	0.36	+1.3
1,678,842	-		IAI47_07925	0.36	+0.3
1,678,989	+		IAI47_07925	0.52	+0.2
1,678,990	-		IAI47_07925	0.52	-0.7
1,678,990	-		IAI47_07925	0.52	+0.9
1,679,022	+		IAI47_07925	0.56	+0.3
1,679,023	-		IAI47_07925	0.56	+0.6
1,679,023	-		IAI47_07925	0.56	-0.3
1,679,034	+		IAI47_07925	0.57	+2.2
1,679,034	+		IAI47_07925	0.57	+1.1
1,679,034	+		IAI47_07925	0.57	+3.0
1,679,035	-		IAI47_07925	0.57	-0.5
1,679,035	-		IAI47_07925	0.57	+0.4
1,679,035	-		IAI47_07925	0.57	-2.1
1,679,074	+		IAI47_07925	0.62	+1.6
1,679,075	-		IAI47_07925	0.62	-0.8
1,679,331	+		IAI47_07925	0.90	+1.3
1,679,331	+		IAI47_07925	0.90	+0.4
1,679,358	+				-0.9
1,679,358	+				+0.0
1,679,359	-				+2.9
1,679,359	-				-0.9
1,679,359	-				+0.2
1,679,381	+				-2.3
1,679,381	+				+1.0
1,679,394	+				-0.2
1,679,394	+				-0.5
1,679,394	+				-0.1
1,679,394	+				+1.1
1,679,420	+				+0.0
1,679,420	+				+0.3
1,679,422	+				+0.2
1,679,422	+				-0.4
1,679,423	-				+0.3
1,679,439	+				+0.2
1,679,580	+				+1.0
1,679,580	+				+0.3
1,679,580	+				+0.0
1,679,651	+				+1.2
1,679,663	+				-0.3
1,679,664	-				-0.0
1,679,664	-				-1.3
1,679,696	-				+1.0
1,679,722	+				+1.9
1,679,722	+				+2.1
1,679,723	-				+0.8
1,679,746	+				+1.0
1,679,749	+				+0.8
1,679,749	+				+0.9
1,679,749	+				-0.4
1,679,750	-				+1.8
1,679,760	+				+0.6
1,679,761	-				+0.8
1,679,761	-				-0.3
1,679,761	-				+1.4
1,679,761	-				+1.2
1,679,761	-				+0.0
1,679,761	-				-1.3
1,679,761	-				+1.3
1,679,778	-				-0.7
1,679,874	+		IAI47_07930	0.54	-0.5
1,679,883	+		IAI47_07930	0.59	-1.1
1,679,910	-		IAI47_07930	0.75	-0.3
1,679,952	+				+0.2
1,679,952	+				+0.2
1,679,953	-				+0.9
1,679,953	-				-1.5
1,679,955	+				-0.0
1,679,955	+				-0.2
1,679,955	+				-1.2
1,679,955	+				-1.8
1,679,955	+				+1.5
1,679,955	+				+0.9
1,679,955	+				+0.9
1,679,956	-				+2.1
1,679,956	-				+2.5
1,679,956	-				+0.3
1,679,960	+				+3.3
1,679,960	+				-0.1
1,679,960	+				-2.4
1,679,960	+				+1.2
1,679,960	+				+0.3
1,679,960	+				-2.4
1,679,960	+				-0.5
1,679,961	-				+0.2
1,679,961	-				+2.8
1,679,961	-				+0.9
1,679,998	-				-2.3
1,680,077	+				+0.9
1,680,077	+				-1.5
1,680,081	+				-0.6
1,680,081	+				+1.3
1,680,081	+				+0.4
1,680,081	+				-0.4
1,680,082	-				-2.6
1,680,082	-				+2.6
1,680,082	-				-0.6
1,680,082	-				-0.2
1,680,082	-				-0.2
1,680,130	+				+0.5
1,680,130	+				-0.9
1,680,131	-				-0.4
1,680,132	+				+0.1
1,680,133	-				-2.3
1,680,133	-				+0.5
1,680,141	+				+1.5
1,680,192	+		IAI47_07935	0.12	+0.4
1,680,262	-		IAI47_07935	0.18	+1.7
1,680,263	+		IAI47_07935	0.18	+3.2
1,680,263	+		IAI47_07935	0.18	-0.3
1,680,263	+		IAI47_07935	0.18	-1.4
1,680,263	+		IAI47_07935	0.18	-0.6
1,680,263	+		IAI47_07935	0.18	-0.8
1,680,263	+		IAI47_07935	0.18	-1.1
1,680,264	-		IAI47_07935	0.18	-0.7
1,680,264	-		IAI47_07935	0.18	-2.0
1,680,264	-		IAI47_07935	0.18	-1.1
1,680,277	-		IAI47_07935	0.19	-0.6
1,680,277	-		IAI47_07935	0.19	-2.0
1,680,288	+		IAI47_07935	0.20	-0.2
1,680,289	-		IAI47_07935	0.20	+1.0
1,680,289	-		IAI47_07935	0.20	-0.6
1,680,293	+		IAI47_07935	0.21	+1.2
1,680,296	+		IAI47_07935	0.21	-0.2
1,680,296	+		IAI47_07935	0.21	+0.7
1,680,296	+		IAI47_07935	0.21	+0.0
1,680,296	+		IAI47_07935	0.21	-0.7
1,680,296	+		IAI47_07935	0.21	+0.6
1,680,296	+		IAI47_07935	0.21	+1.6
1,680,296	+		IAI47_07935	0.21	+0.0
1,680,296	+		IAI47_07935	0.21	+0.7
1,680,297	-		IAI47_07935	0.21	+0.9
1,680,297	-		IAI47_07935	0.21	+0.6
1,680,297	-		IAI47_07935	0.21	-1.1
1,680,297	-		IAI47_07935	0.21	-0.7
1,680,330	+		IAI47_07935	0.24	-0.7
1,680,331	-		IAI47_07935	0.24	-0.6
1,680,331	-		IAI47_07935	0.24	+0.7
1,680,357	+		IAI47_07935	0.26	-1.2
1,680,358	-		IAI47_07935	0.26	-0.2
1,680,390	+		IAI47_07935	0.29	-0.6
1,680,391	-		IAI47_07935	0.29	-1.8
1,680,391	-		IAI47_07935	0.29	-1.1
1,680,391	-		IAI47_07935	0.29	+0.6
1,680,391	-		IAI47_07935	0.29	-0.5
1,680,391	-		IAI47_07935	0.29	-0.3