Strain Fitness in Pantoea sp. MT58 around IAI47_07700

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,631,175	-		IAI47_07690	0.83	+0.6
1,631,220	-		IAI47_07690	0.86	-1.8
1,631,242	+		IAI47_07690	0.88	+1.6
1,631,242	+		IAI47_07690	0.88	+0.8
1,631,242	+		IAI47_07690	0.88	-0.6
1,631,242	+		IAI47_07690	0.88	+0.7
1,631,242	+		IAI47_07690	0.88	-0.4
1,631,242	+		IAI47_07690	0.88	-0.6
1,631,242	+		IAI47_07690	0.88	-0.6
1,631,242	+		IAI47_07690	0.88	-0.9
1,631,243	-		IAI47_07690	0.88	-0.3
1,631,243	-		IAI47_07690	0.88	-1.3
1,631,243	-		IAI47_07690	0.88	-1.0
1,631,243	-		IAI47_07690	0.88	+0.6
1,631,243	-		IAI47_07690	0.88	-0.4
1,631,243	-		IAI47_07690	0.88	+1.0
1,631,246	+		IAI47_07690	0.88	-0.4
1,631,246	+		IAI47_07690	0.88	+0.4
1,631,246	+		IAI47_07690	0.88	+0.6
1,631,247	-		IAI47_07690	0.88	-1.7
1,631,247	-		IAI47_07690	0.88	-0.1
1,631,247	-		IAI47_07690	0.88	-0.4
1,631,328	+				+0.3
1,631,329	-				-0.3
1,631,370	+				-1.6
1,631,389	+				+1.2
1,631,389	+				+0.4
1,631,397	+				-0.1
1,631,397	+				-0.4
1,631,398	-				+2.0
1,631,410	+				-2.1
1,631,456	+		IAI47_07695	0.11	-0.4
1,631,456	+		IAI47_07695	0.11	+2.1
1,631,456	+		IAI47_07695	0.11	-0.0
1,631,469	+		IAI47_07695	0.13	-1.2
1,631,470	-		IAI47_07695	0.13	-1.6
1,631,500	+		IAI47_07695	0.17	+0.8
1,631,518	+		IAI47_07695	0.20	+3.0
1,631,599	-		IAI47_07695	0.32	-2.3
1,631,604	+		IAI47_07695	0.33	+2.2
1,631,605	-		IAI47_07695	0.33	-0.6
1,631,620	-		IAI47_07695	0.35	-1.3
1,631,742	+		IAI47_07695	0.53	-0.1
1,631,785	-		IAI47_07695	0.59	-1.5
1,631,807	-		IAI47_07695	0.62	+1.8
1,631,807	-		IAI47_07695	0.62	+1.4
1,631,828	+		IAI47_07695	0.65	-2.2
1,631,829	-		IAI47_07695	0.65	-0.6
1,631,829	-		IAI47_07695	0.65	+0.3
1,631,829	-		IAI47_07695	0.65	-0.3
1,631,829	-		IAI47_07695	0.65	-1.6
1,631,846	+		IAI47_07695	0.68	+0.2
1,631,846	+		IAI47_07695	0.68	+0.2
1,631,846	+		IAI47_07695	0.68	+0.6
1,631,846	+		IAI47_07695	0.68	+0.6
1,631,846	+		IAI47_07695	0.68	+0.6
1,631,847	-		IAI47_07695	0.68	-1.9
1,631,847	-		IAI47_07695	0.68	+1.2
1,631,847	-		IAI47_07695	0.68	+2.6
1,631,847	-		IAI47_07695	0.68	+1.1
1,631,847	-		IAI47_07695	0.68	-2.6
1,631,847	-		IAI47_07695	0.68	-0.6
1,631,847	-		IAI47_07695	0.68	-0.4
1,631,847	-		IAI47_07695	0.68	-0.2
1,631,847	-		IAI47_07695	0.68	-0.4
1,631,847	-		IAI47_07695	0.68	+0.4
1,631,850	+		IAI47_07695	0.68	-0.8
1,631,850	+		IAI47_07695	0.68	+1.0
1,631,850	+		IAI47_07695	0.68	-1.2
1,631,851	-		IAI47_07695	0.69	-1.0
1,631,851	-		IAI47_07695	0.69	-1.0
1,631,851	-		IAI47_07695	0.69	+2.4
1,631,868	+		IAI47_07695	0.71	-1.0
1,631,869	-		IAI47_07695	0.71	-0.9
1,631,869	-		IAI47_07695	0.71	+0.3
1,631,869	-		IAI47_07695	0.71	+1.5
1,631,870	+		IAI47_07695	0.71	+0.3
1,631,870	+		IAI47_07695	0.71	+3.5
1,631,870	+		IAI47_07695	0.71	+1.0
1,631,871	-		IAI47_07695	0.71	+0.4
1,631,871	-		IAI47_07695	0.71	+0.1
1,631,892	+		IAI47_07695	0.75	+0.6
1,631,892	+		IAI47_07695	0.75	+1.2
1,631,892	+		IAI47_07695	0.75	-0.9
1,631,893	-		IAI47_07695	0.75	-1.1
1,631,900	+		IAI47_07695	0.76	-0.2
1,631,900	+		IAI47_07695	0.76	+0.0
1,631,901	-		IAI47_07695	0.76	+1.5
1,631,939	+		IAI47_07695	0.81	+1.4
1,631,939	+		IAI47_07695	0.81	-0.2
1,631,939	+		IAI47_07695	0.81	+0.3
1,631,939	+		IAI47_07695	0.81	+2.0
1,631,940	-		IAI47_07695	0.82	-2.4
1,631,940	-		IAI47_07695	0.82	+0.6
1,631,991	+		IAI47_07695	0.89	+0.9
1,631,991	+		IAI47_07695	0.89	+0.1
1,631,991	+		IAI47_07695	0.89	-1.0
1,631,992	-		IAI47_07695	0.89	+2.2
1,632,000	+				+0.2
1,632,000	+				+2.2
1,632,001	-				+1.3
1,632,001	-				-0.1
1,632,064	+				+0.6
1,632,064	+				-0.0
1,632,064	+				+2.3
1,632,064	+				+0.2
1,632,065	-				+1.9
1,632,091	+				+0.5
1,632,092	-				+0.2
1,632,125	+				-1.0
1,632,126	-				-1.4
1,632,190	+		IAI47_07700	0.20	-0.5
1,632,190	+		IAI47_07700	0.20	+0.7
1,632,190	+		IAI47_07700	0.20	-1.9
1,632,191	-		IAI47_07700	0.21	+0.6
1,632,191	-		IAI47_07700	0.21	-1.6
1,632,206	+		IAI47_07700	0.29	+2.0
1,632,206	+		IAI47_07700	0.29	-1.5
1,632,308	+		IAI47_07700	0.85	-1.6
1,632,308	+		IAI47_07700	0.85	+0.5
1,632,309	-		IAI47_07700	0.85	-0.2
1,632,309	-		IAI47_07700	0.85	-1.1
1,632,315	+		IAI47_07700	0.89	+0.5
1,632,344	+				-0.4
1,632,345	-				+2.2
1,632,374	+				-0.5
1,632,375	-				+0.9
1,632,375	-				-1.8
1,632,385	+				-0.9
1,632,385	+				+1.6
1,632,386	-				+0.6
1,632,426	+				+0.4
1,632,427	-				-0.6
1,632,427	-				+0.9
1,632,439	+				+0.2
1,632,440	-				+0.3
1,632,449	-				-1.8
1,632,449	-				+1.3
1,632,477	+				-1.9
1,632,522	+				-0.2
1,632,522	+				-1.4
1,632,523	-				-0.6
1,632,523	-				+0.9
1,632,523	-				+0.6
1,632,523	-				+0.9
1,632,524	+				-2.0
1,632,524	+				+0.8
1,632,534	+				+0.6
1,632,534	+				+0.1
1,632,535	-				-0.3
1,632,546	+				-1.6
1,632,558	+				-0.6
1,632,558	+				+0.6
1,632,558	+				+0.2
1,632,559	-				-1.8
1,632,559	-				-0.1
1,632,559	-				-0.7
1,632,559	-				-0.1
1,632,588	+				+0.1
1,632,588	+				+0.2
1,632,588	+				-1.8
1,632,588	+				+0.1
1,632,588	+				+1.3
1,632,588	+				-0.2
1,632,588	+				+0.2
1,632,589	-				-1.1
1,632,589	-				-0.1
1,632,589	-				+1.0
1,632,589	-				+0.0
1,632,589	-				+0.6
1,632,589	-				+1.2
1,632,591	+				+1.0
1,632,592	-				-0.8
1,632,653	-		IAI47_07705	0.11	-2.4
1,632,735	+		IAI47_07705	0.18	-0.7
1,632,735	+		IAI47_07705	0.18	+0.4
1,632,738	+		IAI47_07705	0.18	-0.7
1,632,739	-		IAI47_07705	0.19	+0.7
1,632,757	+		IAI47_07705	0.20	+0.6
1,632,758	-		IAI47_07705	0.20	-0.0
1,632,761	+		IAI47_07705	0.21	+0.3
1,632,761	+		IAI47_07705	0.21	-0.6
1,632,761	+		IAI47_07705	0.21	-1.6
1,632,762	-		IAI47_07705	0.21	-1.2
1,632,762	-		IAI47_07705	0.21	+2.6
1,632,762	-		IAI47_07705	0.21	+0.7
1,632,762	-		IAI47_07705	0.21	-0.6
1,632,766	+		IAI47_07705	0.21	+2.0
1,632,766	+		IAI47_07705	0.21	+1.1
1,632,767	-		IAI47_07705	0.21	+0.2
1,632,767	-		IAI47_07705	0.21	-0.1
1,632,818	-		IAI47_07705	0.26	-1.3
1,632,820	+		IAI47_07705	0.26	-1.4
1,632,821	-		IAI47_07705	0.26	+2.6
1,632,821	-		IAI47_07705	0.26	-0.8
1,632,821	-		IAI47_07705	0.26	+0.2
1,632,823	+		IAI47_07705	0.26	+0.0
1,632,823	+		IAI47_07705	0.26	+1.2
1,632,823	+		IAI47_07705	0.26	-1.1
1,632,823	+		IAI47_07705	0.26	-1.6
1,632,823	+		IAI47_07705	0.26	-0.7
1,632,824	-		IAI47_07705	0.26	+1.5
1,632,824	-		IAI47_07705	0.26	+0.3
1,632,846	+		IAI47_07705	0.28	+0.9
1,632,878	+		IAI47_07705	0.31	+0.8
1,632,878	+		IAI47_07705	0.31	+0.3
1,632,878	+		IAI47_07705	0.31	+0.2
1,632,878	+		IAI47_07705	0.31	-0.0
1,632,878	+		IAI47_07705	0.31	+1.6
1,632,879	-		IAI47_07705	0.31	-2.0
1,632,879	-		IAI47_07705	0.31	+2.6
1,632,879	-		IAI47_07705	0.31	-0.6
1,632,879	-		IAI47_07705	0.31	-0.2
1,632,888	-		IAI47_07705	0.32	+1.7
1,632,895	+		IAI47_07705	0.33	+0.0
1,632,895	+		IAI47_07705	0.33	+1.0
1,632,899	-		IAI47_07705	0.33	-2.0
1,632,940	+		IAI47_07705	0.37	+1.4
1,632,940	+		IAI47_07705	0.37	+2.8
1,632,941	-		IAI47_07705	0.37	+1.0
1,632,941	-		IAI47_07705	0.37	+0.0
1,632,944	+		IAI47_07705	0.37	-1.5
1,632,945	-		IAI47_07705	0.37	+2.0
1,632,975	+		IAI47_07705	0.40	-0.4
1,632,976	-		IAI47_07705	0.40	-0.3
1,633,036	+		IAI47_07705	0.46	+2.0
1,633,037	-		IAI47_07705	0.46	-0.1
1,633,069	+		IAI47_07705	0.49	-0.2
1,633,083	+		IAI47_07705	0.50	-1.1
1,633,083	+		IAI47_07705	0.50	+0.2
1,633,084	-		IAI47_07705	0.50	+0.9
1,633,099	+		IAI47_07705	0.52	+0.2
1,633,130	-		IAI47_07705	0.54	+0.2
1,633,130	-		IAI47_07705	0.54	+1.0
1,633,139	-		IAI47_07705	0.55	-0.6
1,633,205	+		IAI47_07705	0.61	+0.5
1,633,205	+		IAI47_07705	0.61	+0.8
1,633,205	+		IAI47_07705	0.61	-1.3
1,633,205	+		IAI47_07705	0.61	-0.1
1,633,205	+		IAI47_07705	0.61	+0.2
1,633,205	+		IAI47_07705	0.61	-1.3
1,633,205	+		IAI47_07705	0.61	+0.6
1,633,206	-		IAI47_07705	0.61	-1.0
1,633,206	-		IAI47_07705	0.61	+1.6
1,633,206	-		IAI47_07705	0.61	+0.7
1,633,206	-		IAI47_07705	0.61	+1.4
1,633,206	-		IAI47_07705	0.61	+0.3
1,633,206	-		IAI47_07705	0.61	-0.5
1,633,252	+		IAI47_07705	0.66	+0.5
1,633,252	+		IAI47_07705	0.66	+0.4
1,633,252	+		IAI47_07705	0.66	-0.8
1,633,253	-		IAI47_07705	0.66	+0.8
1,633,253	-		IAI47_07705	0.66	-0.2
1,633,253	-		IAI47_07705	0.66	-0.3
1,633,253	-		IAI47_07705	0.66	+1.4
1,633,256	+		IAI47_07705	0.66	+0.9
1,633,256	+		IAI47_07705	0.66	+0.8
1,633,256	+		IAI47_07705	0.66	-1.2
1,633,256	+		IAI47_07705	0.66	-0.2
1,633,256	+		IAI47_07705	0.66	+0.2
1,633,256	+		IAI47_07705	0.66	-2.1
1,633,257	-		IAI47_07705	0.66	-1.4
1,633,257	-		IAI47_07705	0.66	+1.5
1,633,257	-		IAI47_07705	0.66	-0.7
1,633,291	+		IAI47_07705	0.69	+0.4
1,633,294	+		IAI47_07705	0.69	-0.9
1,633,294	+		IAI47_07705	0.69	-1.3
1,633,295	-		IAI47_07705	0.70	+0.0
1,633,295	-		IAI47_07705	0.70	+1.8
1,633,325	+		IAI47_07705	0.72	+0.4
1,633,335	-		IAI47_07705	0.73	+0.0
1,633,335	-		IAI47_07705	0.73	-0.2