Strain Fitness in Pantoea sp. MT58 around IAI47_05915

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,213,137	+		IAI47_05910	0.35	-1.3
1,213,138	-		IAI47_05910	0.35	-1.6
1,213,138	-		IAI47_05910	0.35	+1.5
1,213,157	+		IAI47_05910	0.36	-0.1
1,213,158	-		IAI47_05910	0.36	+1.3
1,213,225	-		IAI47_05910	0.41	+1.5
1,213,225	-		IAI47_05910	0.41	+0.2
1,213,225	-		IAI47_05910	0.41	+0.2
1,213,256	+		IAI47_05910	0.43	-0.2
1,213,256	+		IAI47_05910	0.43	+0.1
1,213,256	+		IAI47_05910	0.43	-0.8
1,213,256	+		IAI47_05910	0.43	-0.5
1,213,257	-		IAI47_05910	0.43	-0.6
1,213,257	-		IAI47_05910	0.43	-0.9
1,213,288	+		IAI47_05910	0.45	+0.7
1,213,289	-		IAI47_05910	0.45	+0.3
1,213,333	-		IAI47_05910	0.48	-1.0
1,213,333	-		IAI47_05910	0.48	-0.3
1,213,353	+		IAI47_05910	0.49	-0.5
1,213,353	+		IAI47_05910	0.49	+1.1
1,213,353	+		IAI47_05910	0.49	-0.0
1,213,354	-		IAI47_05910	0.50	+0.5
1,213,373	+		IAI47_05910	0.51	-0.1
1,213,373	+		IAI47_05910	0.51	-0.2
1,213,373	+		IAI47_05910	0.51	-1.7
1,213,391	+		IAI47_05910	0.52	-0.0
1,213,392	-		IAI47_05910	0.52	+0.3
1,213,463	+		IAI47_05910	0.57	-0.3
1,213,463	+		IAI47_05910	0.57	+1.5
1,213,464	-		IAI47_05910	0.57	-0.3
1,213,464	-		IAI47_05910	0.57	-2.2
1,213,464	-		IAI47_05910	0.57	-2.3
1,213,464	-		IAI47_05910	0.57	-1.9
1,213,506	+		IAI47_05910	0.60	-0.5
1,213,506	+		IAI47_05910	0.60	-0.7
1,213,506	+		IAI47_05910	0.60	+0.4
1,213,506	+		IAI47_05910	0.60	-0.7
1,213,506	+		IAI47_05910	0.60	+0.3
1,213,506	+		IAI47_05910	0.60	-1.7
1,213,506	+		IAI47_05910	0.60	+1.8
1,213,507	-		IAI47_05910	0.60	+0.6
1,213,507	-		IAI47_05910	0.60	-1.4
1,213,507	-		IAI47_05910	0.60	+0.1
1,213,507	-		IAI47_05910	0.60	+0.8
1,213,507	-		IAI47_05910	0.60	-0.5
1,213,507	-		IAI47_05910	0.60	-2.1
1,213,507	-		IAI47_05910	0.60	-0.4
1,213,512	+		IAI47_05910	0.60	+0.0
1,213,512	+		IAI47_05910	0.60	-0.6
1,213,513	-		IAI47_05910	0.60	-0.4
1,213,513	-		IAI47_05910	0.60	+0.1
1,213,513	-		IAI47_05910	0.60	+0.0
1,213,528	-		IAI47_05910	0.61	-0.5
1,213,555	+		IAI47_05910	0.63	-0.2
1,213,637	+		IAI47_05910	0.69	+1.5
1,213,641	+		IAI47_05910	0.69	-0.8
1,213,642	-		IAI47_05910	0.69	-1.2
1,213,642	-		IAI47_05910	0.69	-0.2
1,213,642	-		IAI47_05910	0.69	-1.1
1,213,642	-		IAI47_05910	0.69	+0.9
1,213,642	-		IAI47_05910	0.69	+1.1
1,213,642	-		IAI47_05910	0.69	+0.2
1,213,642	-		IAI47_05910	0.69	+0.3
1,213,642	-		IAI47_05910	0.69	+1.3
1,213,644	+		IAI47_05910	0.69	+0.6
1,213,644	+		IAI47_05910	0.69	+0.5
1,213,645	-		IAI47_05910	0.69	-1.6
1,213,658	+		IAI47_05910	0.70	-0.0
1,213,678	+		IAI47_05910	0.72	+0.1
1,213,678	+		IAI47_05910	0.72	-1.3
1,213,678	+		IAI47_05910	0.72	-0.8
1,213,679	-		IAI47_05910	0.72	-1.1
1,213,679	-		IAI47_05910	0.72	-0.5
1,213,679	-		IAI47_05910	0.72	-1.9
1,213,715	+		IAI47_05910	0.74	-0.6
1,213,715	+		IAI47_05910	0.74	+1.4
1,213,716	-		IAI47_05910	0.74	+0.5
1,213,716	-		IAI47_05910	0.74	-1.7
1,213,716	-		IAI47_05910	0.74	-0.3
1,213,716	-		IAI47_05910	0.74	-0.0
1,213,716	-		IAI47_05910	0.74	-0.4
1,213,716	-		IAI47_05910	0.74	+0.5
1,213,763	+		IAI47_05910	0.77	-0.3
1,213,764	-		IAI47_05910	0.77	-0.6
1,213,934	+		IAI47_05910	0.89	-2.4
1,213,934	+		IAI47_05910	0.89	-0.8
1,213,934	+		IAI47_05910	0.89	-0.4
1,213,934	+		IAI47_05910	0.89	-0.2
1,213,940	+		IAI47_05910	0.89	-0.9
1,213,940	+		IAI47_05910	0.89	-1.1
1,213,940	+		IAI47_05910	0.89	+1.1
1,213,941	-		IAI47_05910	0.89	-1.1
1,214,036	+				+0.6
1,214,036	+				-0.2
1,214,036	+				-0.5
1,214,036	+				+0.9
1,214,036	+				-2.3
1,214,036	+				+1.7
1,214,037	-				+1.7
1,214,037	-				-1.1
1,214,037	-				-0.5
1,214,037	-				+0.1
1,214,045	+				-1.3
1,214,046	-				-0.8
1,214,046	-				+0.1
1,214,046	-				-1.8
1,214,046	-				+0.2
1,214,046	-				-0.9
1,214,080	+				-0.4
1,214,080	+				-1.1
1,214,080	+				+0.6
1,214,080	+				+1.7
1,214,080	+				+0.0
1,214,080	+				-1.6
1,214,080	+				+0.2
1,214,080	+				-1.6
1,214,080	+				-1.3
1,214,081	-				-1.8
1,214,081	-				-1.6
1,214,081	-				-1.1
1,214,081	-				-0.2
1,214,081	-				+1.5
1,214,081	-				-0.2
1,214,166	-		IAI47_05915	0.17	+0.7
1,214,227	+		IAI47_05915	0.26	-1.8
1,214,228	-		IAI47_05915	0.27	-0.4
1,214,350	+		IAI47_05915	0.45	+1.8
1,214,351	-		IAI47_05915	0.46	+1.8
1,214,496	+		IAI47_05915	0.68	+0.7
1,214,496	+		IAI47_05915	0.68	+0.5
1,214,520	+		IAI47_05915	0.72	+0.7
1,214,520	+		IAI47_05915	0.72	-1.4
1,214,521	-		IAI47_05915	0.72	+0.6
1,214,521	-		IAI47_05915	0.72	+1.7
1,214,521	-		IAI47_05915	0.72	+0.7
1,214,521	-		IAI47_05915	0.72	-1.5
1,214,521	-		IAI47_05915	0.72	-1.8
1,214,536	+		IAI47_05915	0.74	-2.3
1,214,536	+		IAI47_05915	0.74	-0.2
1,214,537	-		IAI47_05915	0.74	+0.2
1,214,560	-		IAI47_05915	0.78	-0.4
1,214,599	+		IAI47_05915	0.84	+0.4
1,214,600	-		IAI47_05915	0.84	+0.8
1,214,600	-		IAI47_05915	0.84	-3.1
1,214,661	+				-0.0
1,214,662	-				+1.2
1,214,675	-				+0.3
1,214,702	-				+2.2
1,214,702	-				+0.7
1,214,712	+				-0.6
1,214,712	+				+0.3
1,214,712	+				+0.4
1,214,712	+				-0.4
1,214,713	-				+0.7
1,214,713	-				+1.4
1,214,718	+				-0.5
1,214,719	-				+1.2
1,214,809	+				-1.1
1,214,809	+				-2.3
1,214,809	+				-0.8
1,214,809	+				-0.9
1,214,809	+				+1.0
1,214,810	-				-0.7
1,214,810	-				+1.3
1,214,810	-				-0.4
1,214,810	-				+0.8
1,214,811	+				-0.2
1,214,811	+				+0.6
1,214,812	-				-1.0
1,214,812	-				-0.6
1,214,993	+		IAI47_05920	0.23	+0.9
1,214,993	+		IAI47_05920	0.23	-0.4
1,214,994	-		IAI47_05920	0.23	-0.5
1,214,994	-		IAI47_05920	0.23	-0.4
1,215,034	+		IAI47_05920	0.26	-0.6
1,215,034	+		IAI47_05920	0.26	-1.3
1,215,035	-		IAI47_05920	0.27	+1.6
1,215,035	-		IAI47_05920	0.27	-0.7
1,215,035	-		IAI47_05920	0.27	+0.9
1,215,035	-		IAI47_05920	0.27	-0.0
1,215,035	-		IAI47_05920	0.27	-0.9
1,215,035	-		IAI47_05920	0.27	-0.6
1,215,035	-		IAI47_05920	0.27	+0.6
1,215,103	+		IAI47_05920	0.32	-0.4
1,215,103	+		IAI47_05920	0.32	-0.2
1,215,104	-		IAI47_05920	0.32	+1.4
1,215,114	+		IAI47_05920	0.33	+1.1
1,215,114	+		IAI47_05920	0.33	-0.8
1,215,114	+		IAI47_05920	0.33	-2.0
1,215,114	+		IAI47_05920	0.33	-0.1
1,215,114	+		IAI47_05920	0.33	+0.6
1,215,114	+		IAI47_05920	0.33	-1.8
1,215,114	+		IAI47_05920	0.33	+2.7
1,215,114	+		IAI47_05920	0.33	-0.2
1,215,115	-		IAI47_05920	0.33	-0.8
1,215,115	-		IAI47_05920	0.33	-1.0
1,215,115	-		IAI47_05920	0.33	+0.2
1,215,115	-		IAI47_05920	0.33	-0.7
1,215,115	-		IAI47_05920	0.33	-0.1
1,215,126	+		IAI47_05920	0.34	-0.6
1,215,126	+		IAI47_05920	0.34	-0.7
1,215,126	+		IAI47_05920	0.34	-1.1
1,215,127	-		IAI47_05920	0.34	+2.1
1,215,127	-		IAI47_05920	0.34	-1.2
1,215,127	-		IAI47_05920	0.34	-0.8
1,215,167	+		IAI47_05920	0.37	-0.1
1,215,167	+		IAI47_05920	0.37	-1.2
1,215,190	+		IAI47_05920	0.39	-1.9
1,215,190	+		IAI47_05920	0.39	-0.5
1,215,230	+		IAI47_05920	0.42	+0.7
1,215,230	+		IAI47_05920	0.42	+0.5
1,215,230	+		IAI47_05920	0.42	+0.0
1,215,231	-		IAI47_05920	0.42	-0.2
1,215,231	-		IAI47_05920	0.42	+0.0
1,215,231	-		IAI47_05920	0.42	-0.3
1,215,231	-		IAI47_05920	0.42	-0.2
1,215,245	+		IAI47_05920	0.44	+1.9
1,215,246	-		IAI47_05920	0.44	+2.7
1,215,267	-		IAI47_05920	0.45	-1.1
1,215,287	+		IAI47_05920	0.47	+0.1
1,215,376	+		IAI47_05920	0.54	-2.1
1,215,376	+		IAI47_05920	0.54	+0.1
1,215,433	+		IAI47_05920	0.59	-0.6
1,215,434	-		IAI47_05920	0.59	+0.8
1,215,434	-		IAI47_05920	0.59	-0.8
1,215,438	-		IAI47_05920	0.59	+0.4
1,215,438	-		IAI47_05920	0.59	+0.3
1,215,548	+		IAI47_05920	0.68	-1.0
1,215,548	+		IAI47_05920	0.68	-0.2
1,215,549	-		IAI47_05920	0.68	-1.3
1,215,609	+		IAI47_05920	0.73	+0.2
1,215,609	+		IAI47_05920	0.73	-0.8
1,215,609	+		IAI47_05920	0.73	-0.0
1,215,610	-		IAI47_05920	0.73	+2.5
1,215,610	-		IAI47_05920	0.73	+0.2
1,215,610	-		IAI47_05920	0.73	-1.5
1,215,610	-		IAI47_05920	0.73	-0.1
1,215,675	-		IAI47_05920	0.78	+0.5
1,215,675	-		IAI47_05920	0.78	+0.9
1,215,675	-		IAI47_05920	0.78	-0.4
1,215,690	-		IAI47_05920	0.79	-0.2
1,215,690	-		IAI47_05920	0.79	-1.1