Strain Fitness in Pantoea sp. MT58 around IAI47_05910

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,211,629	+		IAI47_05905	0.18	-0.4
1,211,643	+		IAI47_05905	0.20	-0.1
1,211,753	+		IAI47_05905	0.29	+0.3
1,211,753	+		IAI47_05905	0.29	+0.6
1,211,754	-		IAI47_05905	0.29	-0.3
1,211,856	+		IAI47_05905	0.37	+1.7
1,211,857	-		IAI47_05905	0.37	-1.2
1,211,884	+		IAI47_05905	0.39	-1.1
1,211,885	-		IAI47_05905	0.39	-0.8
1,211,885	-		IAI47_05905	0.39	+2.1
1,211,885	-		IAI47_05905	0.39	+1.1
1,211,885	-		IAI47_05905	0.39	-0.6
1,211,922	+		IAI47_05905	0.43	-0.3
1,211,923	-		IAI47_05905	0.43	-0.3
1,211,923	-		IAI47_05905	0.43	-1.0
1,211,938	+		IAI47_05905	0.44	+1.0
1,211,938	+		IAI47_05905	0.44	+1.7
1,211,938	+		IAI47_05905	0.44	+0.7
1,211,939	-		IAI47_05905	0.44	-0.5
1,211,939	-		IAI47_05905	0.44	-2.5
1,211,939	-		IAI47_05905	0.44	+0.4
1,211,941	+		IAI47_05905	0.44	-1.9
1,211,953	+		IAI47_05905	0.45	+1.0
1,211,986	+		IAI47_05905	0.48	-0.2
1,211,987	-		IAI47_05905	0.48	-0.6
1,211,987	-		IAI47_05905	0.48	-0.6
1,212,005	-		IAI47_05905	0.49	-1.6
1,212,013	+		IAI47_05905	0.50	+0.5
1,212,013	+		IAI47_05905	0.50	-0.1
1,212,013	+		IAI47_05905	0.50	-0.8
1,212,013	+		IAI47_05905	0.50	+0.3
1,212,014	-		IAI47_05905	0.50	-0.2
1,212,014	-		IAI47_05905	0.50	+1.1
1,212,014	-		IAI47_05905	0.50	+1.3
1,212,021	+		IAI47_05905	0.51	+0.9
1,212,021	+		IAI47_05905	0.51	-1.2
1,212,021	+		IAI47_05905	0.51	-0.5
1,212,021	+		IAI47_05905	0.51	-0.0
1,212,021	+		IAI47_05905	0.51	+2.4
1,212,022	-		IAI47_05905	0.51	-0.7
1,212,022	-		IAI47_05905	0.51	+1.7
1,212,022	-		IAI47_05905	0.51	-0.3
1,212,022	-		IAI47_05905	0.51	+2.5
1,212,022	-		IAI47_05905	0.51	-0.5
1,212,022	-		IAI47_05905	0.51	+3.4
1,212,022	-		IAI47_05905	0.51	-0.1
1,212,202	+		IAI47_05905	0.66	+1.3
1,212,202	+		IAI47_05905	0.66	+1.3
1,212,202	+		IAI47_05905	0.66	-1.1
1,212,202	+		IAI47_05905	0.66	+1.0
1,212,204	+		IAI47_05905	0.66	+1.4
1,212,205	-		IAI47_05905	0.66	+0.2
1,212,211	+		IAI47_05905	0.66	-0.5
1,212,211	+		IAI47_05905	0.66	-0.2
1,212,220	+		IAI47_05905	0.67	-0.3
1,212,220	+		IAI47_05905	0.67	-0.5
1,212,220	+		IAI47_05905	0.67	+0.9
1,212,220	+		IAI47_05905	0.67	+0.7
1,212,220	+		IAI47_05905	0.67	+0.4
1,212,220	+		IAI47_05905	0.67	+0.4
1,212,220	+		IAI47_05905	0.67	-0.6
1,212,221	-		IAI47_05905	0.67	+0.1
1,212,221	-		IAI47_05905	0.67	+0.1
1,212,221	-		IAI47_05905	0.67	+0.2
1,212,221	-		IAI47_05905	0.67	+2.0
1,212,282	+		IAI47_05905	0.72	+3.7
1,212,282	+		IAI47_05905	0.72	+0.5
1,212,282	+		IAI47_05905	0.72	+0.3
1,212,282	+		IAI47_05905	0.72	+3.3
1,212,283	-		IAI47_05905	0.72	+1.2
1,212,283	-		IAI47_05905	0.72	-0.8
1,212,283	-		IAI47_05905	0.72	-0.7
1,212,303	+		IAI47_05905	0.74	+0.2
1,212,303	+		IAI47_05905	0.74	+2.5
1,212,304	-		IAI47_05905	0.74	-1.6
1,212,304	-		IAI47_05905	0.74	-0.1
1,212,328	+		IAI47_05905	0.76	-0.5
1,212,328	+		IAI47_05905	0.76	-1.3
1,212,328	+		IAI47_05905	0.76	-1.1
1,212,328	+		IAI47_05905	0.76	-0.2
1,212,328	+		IAI47_05905	0.76	-1.6
1,212,400	+		IAI47_05905	0.82	-0.2
1,212,400	+		IAI47_05905	0.82	+1.4
1,212,400	+		IAI47_05905	0.82	+0.7
1,212,469	+		IAI47_05905	0.87	-0.5
1,212,470	-		IAI47_05905	0.88	+1.0
1,212,470	-		IAI47_05905	0.88	-0.9
1,212,470	-		IAI47_05905	0.88	-1.5
1,212,475	+		IAI47_05905	0.88	-0.3
1,212,475	+		IAI47_05905	0.88	-0.7
1,212,476	-		IAI47_05905	0.88	+0.1
1,212,476	-		IAI47_05905	0.88	-0.9
1,212,476	-		IAI47_05905	0.88	-0.3
1,212,503	+				-0.5
1,212,503	+				+1.1
1,212,503	+				-0.6
1,212,504	-				+0.3
1,212,504	-				+1.1
1,212,504	-				-0.1
1,212,504	-				+1.4
1,212,568	+				-0.5
1,212,568	+				-2.0
1,212,569	-				-0.2
1,212,574	-				+0.8
1,212,574	-				-0.3
1,212,623	+				+1.2
1,212,623	+				-0.3
1,212,623	+				+2.4
1,212,623	+				-0.6
1,212,624	-				-1.4
1,212,624	-				-1.3
1,212,624	-				+1.1
1,212,624	-				-0.3
1,212,624	-				-0.0
1,212,656	-				+0.0
1,212,656	-				-0.3
1,212,656	-				-1.3
1,212,656	-				+3.0
1,212,672	+				-0.9
1,212,672	+				+1.7
1,212,673	-				+3.3
1,212,733	-				-1.8
1,212,818	+		IAI47_05910	0.13	-0.2
1,212,818	+		IAI47_05910	0.13	-1.8
1,212,819	-		IAI47_05910	0.13	-0.2
1,212,958	-		IAI47_05910	0.23	-1.0
1,212,999	+		IAI47_05910	0.25	-0.5
1,213,031	+		IAI47_05910	0.28	+1.7
1,213,137	+		IAI47_05910	0.35	-1.3
1,213,138	-		IAI47_05910	0.35	-1.6
1,213,138	-		IAI47_05910	0.35	+1.5
1,213,157	+		IAI47_05910	0.36	-0.1
1,213,158	-		IAI47_05910	0.36	+1.3
1,213,225	-		IAI47_05910	0.41	+1.5
1,213,225	-		IAI47_05910	0.41	+0.2
1,213,225	-		IAI47_05910	0.41	+0.2
1,213,256	+		IAI47_05910	0.43	-0.2
1,213,256	+		IAI47_05910	0.43	+0.1
1,213,256	+		IAI47_05910	0.43	-0.8
1,213,256	+		IAI47_05910	0.43	-0.5
1,213,257	-		IAI47_05910	0.43	-0.6
1,213,257	-		IAI47_05910	0.43	-0.9
1,213,288	+		IAI47_05910	0.45	+0.7
1,213,289	-		IAI47_05910	0.45	+0.3
1,213,333	-		IAI47_05910	0.48	-1.0
1,213,333	-		IAI47_05910	0.48	-0.3
1,213,353	+		IAI47_05910	0.49	-0.5
1,213,353	+		IAI47_05910	0.49	+1.1
1,213,353	+		IAI47_05910	0.49	-0.0
1,213,354	-		IAI47_05910	0.50	+0.5
1,213,373	+		IAI47_05910	0.51	-0.1
1,213,373	+		IAI47_05910	0.51	-0.2
1,213,373	+		IAI47_05910	0.51	-1.7
1,213,391	+		IAI47_05910	0.52	-0.0
1,213,392	-		IAI47_05910	0.52	+0.3
1,213,463	+		IAI47_05910	0.57	-0.3
1,213,463	+		IAI47_05910	0.57	+1.5
1,213,464	-		IAI47_05910	0.57	-0.3
1,213,464	-		IAI47_05910	0.57	-2.2
1,213,464	-		IAI47_05910	0.57	-2.3
1,213,464	-		IAI47_05910	0.57	-1.9
1,213,506	+		IAI47_05910	0.60	-0.5
1,213,506	+		IAI47_05910	0.60	-0.7
1,213,506	+		IAI47_05910	0.60	+0.4
1,213,506	+		IAI47_05910	0.60	-0.7
1,213,506	+		IAI47_05910	0.60	+0.3
1,213,506	+		IAI47_05910	0.60	-1.7
1,213,506	+		IAI47_05910	0.60	+1.8
1,213,507	-		IAI47_05910	0.60	+0.6
1,213,507	-		IAI47_05910	0.60	-1.4
1,213,507	-		IAI47_05910	0.60	+0.1
1,213,507	-		IAI47_05910	0.60	+0.8
1,213,507	-		IAI47_05910	0.60	-0.5
1,213,507	-		IAI47_05910	0.60	-2.1
1,213,507	-		IAI47_05910	0.60	-0.4
1,213,512	+		IAI47_05910	0.60	+0.0
1,213,512	+		IAI47_05910	0.60	-0.6
1,213,513	-		IAI47_05910	0.60	-0.4
1,213,513	-		IAI47_05910	0.60	+0.1
1,213,513	-		IAI47_05910	0.60	+0.0
1,213,528	-		IAI47_05910	0.61	-0.5
1,213,555	+		IAI47_05910	0.63	-0.2
1,213,637	+		IAI47_05910	0.69	+1.5
1,213,641	+		IAI47_05910	0.69	-0.8
1,213,642	-		IAI47_05910	0.69	-1.2
1,213,642	-		IAI47_05910	0.69	-0.2
1,213,642	-		IAI47_05910	0.69	-1.1
1,213,642	-		IAI47_05910	0.69	+0.9
1,213,642	-		IAI47_05910	0.69	+1.1
1,213,642	-		IAI47_05910	0.69	+0.2
1,213,642	-		IAI47_05910	0.69	+0.3
1,213,642	-		IAI47_05910	0.69	+1.3
1,213,644	+		IAI47_05910	0.69	+0.6
1,213,644	+		IAI47_05910	0.69	+0.5
1,213,645	-		IAI47_05910	0.69	-1.6
1,213,658	+		IAI47_05910	0.70	-0.0
1,213,678	+		IAI47_05910	0.72	+0.1
1,213,678	+		IAI47_05910	0.72	-1.3
1,213,678	+		IAI47_05910	0.72	-0.8
1,213,679	-		IAI47_05910	0.72	-1.1
1,213,679	-		IAI47_05910	0.72	-0.5
1,213,679	-		IAI47_05910	0.72	-1.9
1,213,715	+		IAI47_05910	0.74	-0.6
1,213,715	+		IAI47_05910	0.74	+1.4
1,213,716	-		IAI47_05910	0.74	+0.5
1,213,716	-		IAI47_05910	0.74	-1.7
1,213,716	-		IAI47_05910	0.74	-0.3
1,213,716	-		IAI47_05910	0.74	-0.0
1,213,716	-		IAI47_05910	0.74	-0.4
1,213,716	-		IAI47_05910	0.74	+0.5
1,213,763	+		IAI47_05910	0.77	-0.3
1,213,764	-		IAI47_05910	0.77	-0.6
1,213,934	+		IAI47_05910	0.89	-2.4
1,213,934	+		IAI47_05910	0.89	-0.8
1,213,934	+		IAI47_05910	0.89	-0.4
1,213,934	+		IAI47_05910	0.89	-0.2
1,213,940	+		IAI47_05910	0.89	-0.9
1,213,940	+		IAI47_05910	0.89	-1.1
1,213,940	+		IAI47_05910	0.89	+1.1
1,213,941	-		IAI47_05910	0.89	-1.1
1,214,036	+				+0.6
1,214,036	+				-0.2
1,214,036	+				-0.5
1,214,036	+				+0.9
1,214,036	+				-2.3
1,214,036	+				+1.7
1,214,037	-				+1.7
1,214,037	-				-1.1
1,214,037	-				-0.5
1,214,037	-				+0.1
1,214,045	+				-1.3
1,214,046	-				-0.8
1,214,046	-				+0.1
1,214,046	-				-1.8
1,214,046	-				+0.2
1,214,046	-				-0.9
1,214,080	+				-0.4
1,214,080	+				-1.1
1,214,080	+				+0.6
1,214,080	+				+1.7
1,214,080	+				+0.0
1,214,080	+				-1.6
1,214,080	+				+0.2
1,214,080	+				-1.6
1,214,080	+				-1.3
1,214,081	-				-1.8
1,214,081	-				-1.6
1,214,081	-				-1.1
1,214,081	-				-0.2
1,214,081	-				+1.5
1,214,081	-				-0.2
1,214,166	-		IAI47_05915	0.17	+0.7
1,214,227	+		IAI47_05915	0.26	-1.8
1,214,228	-		IAI47_05915	0.27	-0.4
1,214,350	+		IAI47_05915	0.45	+1.8
1,214,351	-		IAI47_05915	0.46	+1.8
1,214,496	+		IAI47_05915	0.68	+0.7
1,214,496	+		IAI47_05915	0.68	+0.5
1,214,520	+		IAI47_05915	0.72	+0.7
1,214,520	+		IAI47_05915	0.72	-1.4
1,214,521	-		IAI47_05915	0.72	+0.6
1,214,521	-		IAI47_05915	0.72	+1.7
1,214,521	-		IAI47_05915	0.72	+0.7
1,214,521	-		IAI47_05915	0.72	-1.5
1,214,521	-		IAI47_05915	0.72	-1.8
1,214,536	+		IAI47_05915	0.74	-2.3
1,214,536	+		IAI47_05915	0.74	-0.2
1,214,537	-		IAI47_05915	0.74	+0.2
1,214,560	-		IAI47_05915	0.78	-0.4
1,214,599	+		IAI47_05915	0.84	+0.4
1,214,600	-		IAI47_05915	0.84	+0.8
1,214,600	-		IAI47_05915	0.84	-3.1
1,214,661	+				-0.0
1,214,662	-				+1.2
1,214,675	-				+0.3
1,214,702	-				+2.2
1,214,702	-				+0.7
1,214,712	+				-0.6
1,214,712	+				+0.3
1,214,712	+				+0.4
1,214,712	+				-0.4
1,214,713	-				+0.7
1,214,713	-				+1.4
1,214,718	+				-0.5
1,214,719	-				+1.2
1,214,809	+				-1.1
1,214,809	+				-2.3
1,214,809	+				-0.8
1,214,809	+				-0.9
1,214,809	+				+1.0
1,214,810	-				-0.7
1,214,810	-				+1.3
1,214,810	-				-0.4
1,214,810	-				+0.8
1,214,811	+				-0.2
1,214,811	+				+0.6
1,214,812	-				-1.0
1,214,812	-				-0.6
1,214,993	+		IAI47_05920	0.23	+0.9
1,214,993	+		IAI47_05920	0.23	-0.4
1,214,994	-		IAI47_05920	0.23	-0.5
1,214,994	-		IAI47_05920	0.23	-0.4
1,215,034	+		IAI47_05920	0.26	-0.6
1,215,034	+		IAI47_05920	0.26	-1.3
1,215,035	-		IAI47_05920	0.27	+1.6
1,215,035	-		IAI47_05920	0.27	-0.7
1,215,035	-		IAI47_05920	0.27	+0.9
1,215,035	-		IAI47_05920	0.27	-0.0
1,215,035	-		IAI47_05920	0.27	-0.9
1,215,035	-		IAI47_05920	0.27	-0.6
1,215,035	-		IAI47_05920	0.27	+0.6