Strain Fitness in Pantoea sp. MT58 around IAI47_05020

Experiment: Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,053,922	+				-0.2
1,053,922	+				+1.2
1,053,922	+				-1.6
1,053,923	-				-0.0
1,053,923	-				-0.1
1,053,923	-				+2.9
1,053,923	-				+1.6
1,053,961	+				-0.0
1,053,961	+				+1.1
1,053,961	+				+1.2
1,053,961	+				+0.8
1,053,962	-				-0.1
1,054,035	-				+0.4
1,054,042	+				-0.6
1,054,104	+				-1.3
1,054,104	+				-0.1
1,054,104	+				+0.4
1,054,104	+				+2.5
1,054,104	+				-1.1
1,054,104	+				+1.4
1,054,104	+				+0.1
1,054,104	+				-0.3
1,054,104	+				-1.2
1,054,105	-				+0.0
1,054,105	-				-0.9
1,054,213	-		IAI47_05015	0.14	+0.7
1,054,284	+		IAI47_05015	0.23	+0.1
1,054,284	+		IAI47_05015	0.23	-1.6
1,054,284	+		IAI47_05015	0.23	-0.5
1,054,285	-		IAI47_05015	0.24	-1.6
1,054,285	-		IAI47_05015	0.24	-0.5
1,054,285	-		IAI47_05015	0.24	+1.1
1,054,285	-		IAI47_05015	0.24	-1.6
1,054,359	-		IAI47_05015	0.33	-2.3
1,054,478	+		IAI47_05015	0.49	+0.6
1,054,584	+		IAI47_05015	0.63	+2.4
1,054,584	+		IAI47_05015	0.63	+1.7
1,054,584	+		IAI47_05015	0.63	+0.2
1,054,584	+		IAI47_05015	0.63	-1.3
1,054,584	+		IAI47_05015	0.63	-0.0
1,054,584	+		IAI47_05015	0.63	-0.6
1,054,584	+		IAI47_05015	0.63	+1.7
1,054,585	-		IAI47_05015	0.63	+2.8
1,054,585	-		IAI47_05015	0.63	+0.8
1,054,585	-		IAI47_05015	0.63	+1.4
1,054,585	-		IAI47_05015	0.63	-1.7
1,054,605	+		IAI47_05015	0.65	-0.6
1,054,605	+		IAI47_05015	0.65	-0.5
1,054,605	+		IAI47_05015	0.65	-0.0
1,054,606	-		IAI47_05015	0.65	+4.0
1,054,641	+		IAI47_05015	0.70	-0.8
1,054,641	+		IAI47_05015	0.70	-0.9
1,054,641	+		IAI47_05015	0.70	-1.0
1,054,642	-		IAI47_05015	0.70	+0.2
1,054,642	-		IAI47_05015	0.70	-0.2
1,054,642	-		IAI47_05015	0.70	+0.3
1,054,646	+		IAI47_05015	0.71	-0.0
1,054,646	+		IAI47_05015	0.71	+0.8
1,054,646	+		IAI47_05015	0.71	-0.7
1,054,647	-		IAI47_05015	0.71	+0.0
1,054,716	+		IAI47_05015	0.80	+3.1
1,054,717	-		IAI47_05015	0.80	+0.7
1,054,743	+		IAI47_05015	0.83	-0.0
1,054,743	+		IAI47_05015	0.83	-1.3
1,054,743	+		IAI47_05015	0.83	-0.2
1,054,743	+		IAI47_05015	0.83	+0.2
1,054,810	+				-1.9
1,054,810	+				+0.6
1,054,810	+				-0.1
1,054,810	+				-0.2
1,054,810	+				+0.1
1,054,810	+				+1.7
1,054,810	+				-2.3
1,054,810	+				+0.5
1,054,810	+				+0.6
1,054,810	+				+0.8
1,054,811	-				-1.3
1,054,811	-				-0.1
1,054,811	-				-0.3
1,054,811	-				+0.9
1,054,811	-				+1.0
1,054,811	-				-1.9
1,054,863	+				+0.1
1,054,864	-				+2.0
1,054,864	-				-1.3
1,054,864	-				+0.5
1,054,879	+				-0.2
1,054,880	-				-1.0
1,054,880	-				-0.3
1,054,880	-				+0.1
1,054,880	-				-2.1
1,054,913	-				-0.8
1,054,922	+				-0.9
1,054,922	+				+1.3
1,054,922	+				-1.1
1,054,922	+				+0.1
1,054,966	+				-0.9
1,054,966	+				-0.8
1,054,966	+				+1.1
1,054,966	+				+0.9
1,054,967	-				-0.2
1,054,967	-				+1.0
1,054,967	-				+0.9
1,054,967	-				+0.1
1,055,025	+		IAI47_05020	0.14	-1.3
1,055,063	+		IAI47_05020	0.18	+0.1
1,055,064	-		IAI47_05020	0.18	+0.7
1,055,135	+		IAI47_05020	0.27	+2.4
1,055,135	+		IAI47_05020	0.27	+0.3
1,055,135	+		IAI47_05020	0.27	+0.4
1,055,135	+		IAI47_05020	0.27	-1.5
1,055,135	+		IAI47_05020	0.27	-0.1
1,055,135	+		IAI47_05020	0.27	+2.0
1,055,135	+		IAI47_05020	0.27	-0.5
1,055,136	-		IAI47_05020	0.27	+0.8
1,055,136	-		IAI47_05020	0.27	-0.1
1,055,165	+		IAI47_05020	0.30	-0.9
1,055,165	+		IAI47_05020	0.30	-0.2
1,055,165	+		IAI47_05020	0.30	-0.1
1,055,166	-		IAI47_05020	0.30	+4.2
1,055,166	-		IAI47_05020	0.30	-0.0
1,055,211	-		IAI47_05020	0.36	-0.8
1,055,489	+		IAI47_05020	0.69	+1.1
1,055,489	+		IAI47_05020	0.69	-0.0
1,055,490	-		IAI47_05020	0.69	-0.1
1,055,490	-		IAI47_05020	0.69	-0.6
1,055,490	-		IAI47_05020	0.69	+1.9
1,055,549	+		IAI47_05020	0.76	+0.1
1,055,549	+		IAI47_05020	0.76	-1.8
1,055,549	+		IAI47_05020	0.76	-0.9
1,055,549	+		IAI47_05020	0.76	-0.9
1,055,549	+		IAI47_05020	0.76	+0.6
1,055,549	+		IAI47_05020	0.76	-0.5
1,055,549	+		IAI47_05020	0.76	+2.0
1,055,550	-		IAI47_05020	0.76	+0.8
1,055,558	-		IAI47_05020	0.77	-0.2
1,055,588	+		IAI47_05020	0.80	-0.6
1,055,589	-		IAI47_05020	0.80	-1.5
1,055,596	+		IAI47_05020	0.81	+4.4
1,055,596	+		IAI47_05020	0.81	-1.0
1,055,597	-		IAI47_05020	0.81	-0.8
1,055,597	-		IAI47_05020	0.81	+0.5
1,055,597	-		IAI47_05020	0.81	-1.8
1,055,597	-		IAI47_05020	0.81	+0.2
1,055,597	-		IAI47_05020	0.81	-1.3
1,055,610	+		IAI47_05020	0.83	+0.6
1,055,611	-		IAI47_05020	0.83	+2.0
1,055,626	+		IAI47_05020	0.85	-1.4
1,055,626	+		IAI47_05020	0.85	-0.1
1,055,627	-		IAI47_05020	0.85	+0.9
1,055,627	-		IAI47_05020	0.85	-0.2
1,055,627	-		IAI47_05020	0.85	+1.5
1,055,685	+				-0.6
1,055,686	-				+0.5
1,055,707	+				-0.5
1,055,707	+				-0.2
1,055,707	+				-0.2
1,055,707	+				-0.6
1,055,707	+				+0.6
1,055,707	+				-1.3
1,055,708	-				+0.2
1,055,708	-				-1.1
1,055,708	-				-0.0
1,055,708	-				+1.1
1,055,718	+				-0.2
1,055,719	-				-0.7
1,055,753	+				+2.2
1,055,753	+				+0.1
1,055,753	+				+0.6
1,055,754	-				+0.9
1,055,754	-				+0.6
1,055,754	-				-0.5
1,055,754	-				+0.1
1,055,780	+				+3.6
1,055,780	+				-0.2
1,055,780	+				-2.3
1,055,781	-				+0.3
1,055,781	-				+0.0
1,055,826	+				+0.5
1,055,827	-				+0.5
1,055,827	-				+0.4
1,055,827	-				-1.2
1,055,827	-				-0.3
1,055,827	-				-0.8
1,055,843	-				+1.2
1,055,859	+				+0.8
1,055,896	+				+0.8
1,055,896	+				+0.5
1,055,896	+				+0.9
1,055,897	-				-0.3
1,055,967	+				+0.4
1,055,967	+				+0.6
1,055,967	+				-0.0
1,055,967	+				-1.0
1,055,968	-				-0.5
1,055,970	+				-0.8
1,055,970	+				+0.2
1,055,970	+				-0.3
1,055,970	+				-1.8
1,055,971	-				+1.9
1,056,084	+				+0.5
1,056,084	+				-1.2
1,056,084	+				+2.3
1,056,085	-				-1.5
1,056,085	-				-0.9
1,056,110	-				+1.8
1,056,117	-				+1.0
1,056,148	+				+1.6
1,056,149	-				+0.8
1,056,149	-				-0.7
1,056,293	+				+0.7
1,056,294	-				+1.4
1,056,320	-				+2.5
1,056,320	-				-0.3
1,056,320	-				-0.3
1,056,370	+				-0.3
1,056,371	-				-0.4
1,056,371	-				-1.7
1,056,371	-				+0.5
1,056,371	-				+0.0
1,056,371	-				+0.1
1,056,399	+		IAI47_05025	0.10	-0.8
1,056,399	+		IAI47_05025	0.10	+0.0
1,056,436	+		IAI47_05025	0.11	-0.8
1,056,436	+		IAI47_05025	0.11	+0.7
1,056,436	+		IAI47_05025	0.11	+0.9
1,056,436	+		IAI47_05025	0.11	+1.7
1,056,437	-		IAI47_05025	0.11	+1.2
1,056,437	-		IAI47_05025	0.11	+0.7
1,056,477	-		IAI47_05025	0.12	-1.2
1,056,536	+		IAI47_05025	0.13	-1.7
1,056,537	-		IAI47_05025	0.13	-1.6
1,056,556	+		IAI47_05025	0.13	-0.5
1,056,556	+		IAI47_05025	0.13	+1.0
1,056,556	+		IAI47_05025	0.13	+0.4
1,056,557	-		IAI47_05025	0.13	-0.2
1,056,557	-		IAI47_05025	0.13	+1.0
1,056,632	+		IAI47_05025	0.15	-1.1
1,056,632	+		IAI47_05025	0.15	+0.6
1,056,662	+		IAI47_05025	0.16	-0.6
1,056,662	+		IAI47_05025	0.16	+1.7
1,056,663	-		IAI47_05025	0.16	+0.8
1,056,669	-		IAI47_05025	0.16	+0.7
1,056,682	+		IAI47_05025	0.16	-1.5