Strain Fitness in Pantoea sp. MT58 around IAI47_17325

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,669,072	+		IAI47_17320	0.40	-1.1
3,669,072	+		IAI47_17320	0.40	+2.0
3,669,072	+		IAI47_17320	0.40	+0.4
3,669,073	-		IAI47_17320	0.40	-0.4
3,669,123	+		IAI47_17320	0.43	-0.0
3,669,123	+		IAI47_17320	0.43	+2.0
3,669,124	-		IAI47_17320	0.44	-0.5
3,669,148	+		IAI47_17320	0.45	+0.6
3,669,148	+		IAI47_17320	0.45	+0.3
3,669,148	+		IAI47_17320	0.45	-0.6
3,669,148	+		IAI47_17320	0.45	-0.6
3,669,149	-		IAI47_17320	0.45	-1.4
3,669,218	-		IAI47_17320	0.50	+0.1
3,669,231	-		IAI47_17320	0.51	-1.4
3,669,246	+		IAI47_17320	0.52	+0.4
3,669,246	+		IAI47_17320	0.52	+0.6
3,669,247	-		IAI47_17320	0.52	+1.3
3,669,279	+		IAI47_17320	0.54	+1.0
3,669,279	+		IAI47_17320	0.54	+1.0
3,669,279	+		IAI47_17320	0.54	-2.1
3,669,280	-		IAI47_17320	0.54	-0.3
3,669,280	-		IAI47_17320	0.54	+0.4
3,669,280	-		IAI47_17320	0.54	+1.1
3,669,326	+		IAI47_17320	0.58	-0.4
3,669,326	+		IAI47_17320	0.58	-0.2
3,669,326	+		IAI47_17320	0.58	-1.2
3,669,327	-		IAI47_17320	0.58	-1.0
3,669,432	+		IAI47_17320	0.65	-0.9
3,669,521	-		IAI47_17320	0.71	+0.3
3,669,598	+		IAI47_17320	0.77	-0.6
3,669,598	+		IAI47_17320	0.77	+0.1
3,669,647	+		IAI47_17320	0.80	+0.1
3,669,647	+		IAI47_17320	0.80	+0.3
3,669,647	+		IAI47_17320	0.80	+1.3
3,669,647	+		IAI47_17320	0.80	+0.9
3,669,648	-		IAI47_17320	0.80	-1.2
3,669,648	-		IAI47_17320	0.80	+0.2
3,669,648	-		IAI47_17320	0.80	+0.2
3,669,648	-		IAI47_17320	0.80	-1.0
3,669,680	-		IAI47_17320	0.82	-0.4
3,669,707	+		IAI47_17320	0.84	+0.0
3,669,707	+		IAI47_17320	0.84	-0.2
3,669,707	+		IAI47_17320	0.84	-1.0
3,669,707	+		IAI47_17320	0.84	+1.8
3,669,707	+		IAI47_17320	0.84	+1.1
3,669,707	+		IAI47_17320	0.84	-1.8
3,669,708	-		IAI47_17320	0.84	-0.2
3,669,708	-		IAI47_17320	0.84	-0.5
3,669,708	-		IAI47_17320	0.84	+1.2
3,669,708	-		IAI47_17320	0.84	+0.2
3,669,715	+		IAI47_17320	0.85	-1.4
3,669,716	-		IAI47_17320	0.85	+0.5
3,669,716	-		IAI47_17320	0.85	+0.4
3,669,728	-		IAI47_17320	0.86	-0.8
3,669,737	+		IAI47_17320	0.86	-0.9
3,669,737	+		IAI47_17320	0.86	+0.5
3,669,737	+		IAI47_17320	0.86	-2.3
3,669,737	+		IAI47_17320	0.86	+0.6
3,669,737	+		IAI47_17320	0.86	-1.5
3,669,738	-		IAI47_17320	0.86	+0.4
3,669,738	-		IAI47_17320	0.86	+1.2
3,669,738	-		IAI47_17320	0.86	+0.7
3,669,738	-		IAI47_17320	0.86	-1.2
3,669,738	-		IAI47_17320	0.86	+0.3
3,669,749	+		IAI47_17320	0.87	+1.7
3,669,749	+		IAI47_17320	0.87	+0.7
3,669,749	+		IAI47_17320	0.87	-1.3
3,669,750	-		IAI47_17320	0.87	+1.3
3,669,750	-		IAI47_17320	0.87	-1.0
3,669,803	-				-1.0
3,669,803	-				-0.6
3,669,862	+				+0.2
3,669,862	+				-2.6
3,669,862	+				-0.2
3,669,862	+				-1.2
3,669,862	+				+0.1
3,669,862	+				+0.3
3,669,863	-				-1.6
3,669,863	-				-0.4
3,669,887	+				+1.0
3,669,888	-				+0.2
3,669,896	+				+0.6
3,669,897	-				-0.6
3,669,897	-				-0.7
3,669,897	-				-0.3
3,669,897	-				+0.4
3,669,899	-				+0.4
3,669,911	+				+0.7
3,669,912	-				+0.6
3,669,912	-				+0.3
3,669,912	-				-0.1
3,669,913	+				+0.1
3,669,913	+				-0.0
3,669,913	+				-2.3
3,669,914	-				+0.4
3,669,914	-				-0.6
3,669,914	-				-0.1
3,669,914	-				-0.0
3,669,915	-				+0.6
3,669,932	+				+1.2
3,669,932	+				+0.3
3,669,932	+				-1.1
3,669,932	+				+0.5
3,669,933	-				-0.6
3,669,940	-				-1.9
3,669,940	-				+0.2
3,669,965	+				-0.3
3,669,966	-				-1.0
3,669,999	+				-1.3
3,669,999	+				+1.2
3,669,999	+				+0.2
3,670,020	-				+0.5
3,670,027	+				-0.3
3,670,027	+				-0.4
3,670,027	+				+1.1
3,670,027	+				+1.4
3,670,027	+				+0.6
3,670,027	+				+0.1
3,670,028	-				+0.1
3,670,066	+				-0.6
3,670,259	+		IAI47_17325	0.16	+0.3
3,670,259	+		IAI47_17325	0.16	-1.2
3,670,259	+		IAI47_17325	0.16	-0.8
3,670,259	+		IAI47_17325	0.16	-1.5
3,670,259	+		IAI47_17325	0.16	-0.7
3,670,260	-		IAI47_17325	0.16	-0.5
3,670,260	-		IAI47_17325	0.16	-1.2
3,670,260	-		IAI47_17325	0.16	-0.4
3,670,335	-		IAI47_17325	0.22	+0.2
3,670,335	-		IAI47_17325	0.22	-1.4
3,670,335	-		IAI47_17325	0.22	-0.7
3,670,366	+		IAI47_17325	0.25	+0.4
3,670,367	-		IAI47_17325	0.25	+0.2
3,670,419	+		IAI47_17325	0.29	+0.1
3,670,420	-		IAI47_17325	0.29	+0.6
3,670,450	-		IAI47_17325	0.31	-0.6
3,670,464	+		IAI47_17325	0.32	+0.4
3,670,471	+		IAI47_17325	0.33	+0.4
3,670,471	+		IAI47_17325	0.33	+0.6
3,670,472	-		IAI47_17325	0.33	-0.4
3,670,538	+		IAI47_17325	0.38	-1.5
3,670,538	+		IAI47_17325	0.38	-1.9
3,670,538	+		IAI47_17325	0.38	+1.0
3,670,538	+		IAI47_17325	0.38	-0.5
3,670,539	-		IAI47_17325	0.38	+0.1
3,670,539	-		IAI47_17325	0.38	-0.7
3,670,539	-		IAI47_17325	0.38	-0.2
3,670,539	-		IAI47_17325	0.38	+4.4
3,670,539	-		IAI47_17325	0.38	+0.1
3,670,540	+		IAI47_17325	0.38	-0.4
3,670,540	+		IAI47_17325	0.38	-1.5
3,670,540	+		IAI47_17325	0.38	+0.2
3,670,540	+		IAI47_17325	0.38	-1.4
3,670,540	+		IAI47_17325	0.38	+1.2
3,670,540	+		IAI47_17325	0.38	-0.1
3,670,540	+		IAI47_17325	0.38	+0.5
3,670,540	+		IAI47_17325	0.38	-1.0
3,670,541	-		IAI47_17325	0.38	-1.0
3,670,541	-		IAI47_17325	0.38	+0.4
3,670,541	-		IAI47_17325	0.38	-0.7
3,670,606	+		IAI47_17325	0.43	+1.0
3,670,606	+		IAI47_17325	0.43	-1.0
3,670,606	+		IAI47_17325	0.43	-0.1
3,670,607	-		IAI47_17325	0.43	+1.1
3,670,614	+		IAI47_17325	0.44	+0.4
3,670,614	+		IAI47_17325	0.44	-0.1
3,670,643	+		IAI47_17325	0.46	-0.9
3,670,643	+		IAI47_17325	0.46	+0.5
3,670,643	+		IAI47_17325	0.46	-1.7
3,670,644	-		IAI47_17325	0.46	-0.8
3,670,644	-		IAI47_17325	0.46	+1.8
3,670,763	+		IAI47_17325	0.55	+2.3
3,670,763	+		IAI47_17325	0.55	-0.3
3,670,763	+		IAI47_17325	0.55	+1.6
3,670,763	+		IAI47_17325	0.55	-1.6
3,670,764	-		IAI47_17325	0.55	-1.6
3,670,764	-		IAI47_17325	0.55	+0.2
3,670,764	-		IAI47_17325	0.55	+0.5
3,670,840	+		IAI47_17325	0.61	-1.1
3,670,915	+		IAI47_17325	0.67	-0.2
3,670,916	-		IAI47_17325	0.67	-0.7
3,670,944	+		IAI47_17325	0.69	+0.9
3,670,945	-		IAI47_17325	0.69	+1.2
3,670,969	+		IAI47_17325	0.71	-0.2
3,670,969	+		IAI47_17325	0.71	-1.5
3,670,970	-		IAI47_17325	0.71	-1.0
3,670,970	-		IAI47_17325	0.71	-0.4
3,670,970	-		IAI47_17325	0.71	-0.9
3,670,970	-		IAI47_17325	0.71	-1.6
3,670,970	-		IAI47_17325	0.71	-0.0
3,670,977	+		IAI47_17325	0.72	-0.1
3,670,978	-		IAI47_17325	0.72	+1.2
3,670,978	-		IAI47_17325	0.72	-0.3
3,671,017	+		IAI47_17325	0.75	-2.2
3,671,017	+		IAI47_17325	0.75	+0.5
3,671,018	-		IAI47_17325	0.75	+2.5
3,671,018	-		IAI47_17325	0.75	+2.0
3,671,023	-		IAI47_17325	0.75	+1.0
3,671,078	+		IAI47_17325	0.79	-1.6
3,671,078	+		IAI47_17325	0.79	+0.1
3,671,079	-		IAI47_17325	0.79	-0.4
3,671,195	+		IAI47_17325	0.88	-0.6
3,671,195	+		IAI47_17325	0.88	-0.8
3,671,263	+				+0.3
3,671,275	+				+2.7
3,671,275	+				-0.3
3,671,276	-				+2.6
3,671,289	+				-0.2
3,671,289	+				+0.2
3,671,290	-				+1.5
3,671,290	-				+0.2
3,671,343	+				+1.0
3,671,343	+				-1.7
3,671,343	+				-0.3
3,671,343	+				-1.9
3,671,343	+				+0.8
3,671,344	-				-1.6
3,671,345	+				-0.2
3,671,346	-				-1.2
3,671,346	-				-1.1
3,671,362	+				-3.1
3,671,363	-				+0.8
3,671,378	+				-1.4
3,671,379	-				-0.3
3,671,379	-				+0.4
3,671,379	-				-1.5
3,671,396	-				-0.2
3,671,396	-				-0.4
3,671,535	+		IAI47_17330	0.39	+0.3
3,671,535	+		IAI47_17330	0.39	-0.2
3,671,536	-		IAI47_17330	0.39	+1.1
3,671,536	-		IAI47_17330	0.39	+0.6
3,671,536	-		IAI47_17330	0.39	-0.6
3,671,537	+		IAI47_17330	0.40	+0.8
3,671,628	-		IAI47_17330	0.69	-0.6
3,671,643	+		IAI47_17330	0.73	+1.0
3,671,643	+		IAI47_17330	0.73	-1.9
3,671,643	+		IAI47_17330	0.73	+0.4
3,671,643	+		IAI47_17330	0.73	+1.2
3,671,643	+		IAI47_17330	0.73	-0.9
3,671,643	+		IAI47_17330	0.73	+0.0
3,671,644	-		IAI47_17330	0.74	+0.8
3,671,644	-		IAI47_17330	0.74	-0.8
3,671,644	-		IAI47_17330	0.74	+0.1
3,671,644	-		IAI47_17330	0.74	+0.1
3,671,644	-		IAI47_17330	0.74	+0.2
3,671,644	-		IAI47_17330	0.74	+0.8
3,671,684	-		IAI47_17330	0.86	+0.1
3,671,688	-		IAI47_17330	0.88	+1.1
3,671,688	-		IAI47_17330	0.88	-1.4
3,671,688	-		IAI47_17330	0.88	+1.2
3,671,694	+		IAI47_17330	0.90	+0.2
3,671,694	+		IAI47_17330	0.90	-0.5
3,671,694	+		IAI47_17330	0.90	+0.3
3,671,694	+		IAI47_17330	0.90	-0.3
3,671,694	+		IAI47_17330	0.90	-0.8
3,671,694	+		IAI47_17330	0.90	+0.8
3,671,694	+		IAI47_17330	0.90	+0.4
3,671,694	+		IAI47_17330	0.90	-0.3
3,671,694	+		IAI47_17330	0.90	+1.7
3,671,694	+		IAI47_17330	0.90	+0.9
3,671,695	-				-0.5
3,671,695	-				+1.5
3,671,695	-				+1.0
3,671,695	-				+0.1
3,671,695	-				+0.1
3,671,695	-				+0.8
3,671,695	-				+0.9
3,671,695	-				+0.5
3,671,695	-				+0.5
3,671,724	+				-1.1
3,671,724	+				-1.4
3,671,725	-				-1.1
3,671,728	+				+2.3
3,671,728	+				+0.1
3,671,729	-				+1.4
3,671,729	-				-1.0
3,671,749	+				+1.5
3,671,750	-				+0.8
3,671,750	-				-2.4
3,671,750	-				+1.2
3,671,750	-				-1.9
3,671,782	+				-0.3
3,671,824	+				+0.4
3,671,857	+				+1.7
3,671,857	+				-0.9
3,671,858	-				+0.8
3,671,858	-				+0.9
3,671,886	-		IAI47_17335	0.11	+1.6
3,671,888	+		IAI47_17335	0.11	+0.5
3,671,888	+		IAI47_17335	0.11	+0.3
3,671,888	+		IAI47_17335	0.11	-0.1
3,671,888	+		IAI47_17335	0.11	+2.3
3,671,888	+		IAI47_17335	0.11	-0.2
3,671,888	+		IAI47_17335	0.11	-1.4
3,671,888	+		IAI47_17335	0.11	-0.9
3,671,888	+		IAI47_17335	0.11	+0.0
3,671,888	+		IAI47_17335	0.11	-0.0
3,671,888	+		IAI47_17335	0.11	+0.9
3,671,888	+		IAI47_17335	0.11	+1.4
3,671,889	-		IAI47_17335	0.11	+1.1
3,671,889	-		IAI47_17335	0.11	+0.5
3,671,889	-		IAI47_17335	0.11	-1.4
3,671,889	-		IAI47_17335	0.11	+1.2
3,671,889	-		IAI47_17335	0.11	+0.3
3,671,889	-		IAI47_17335	0.11	+1.1
3,671,889	-		IAI47_17335	0.11	+1.2
3,671,889	-		IAI47_17335	0.11	+1.7
3,671,889	-		IAI47_17335	0.11	-0.1
3,671,889	-		IAI47_17335	0.11	+0.3
3,671,889	-		IAI47_17335	0.11	+0.0
3,671,889	-		IAI47_17335	0.11	+0.2
3,671,999	+		IAI47_17335	0.17	+2.0
3,671,999	+		IAI47_17335	0.17	+0.5
3,672,027	+		IAI47_17335	0.19	-0.6
3,672,027	+		IAI47_17335	0.19	+1.2
3,672,028	-		IAI47_17335	0.19	-0.4
3,672,068	+		IAI47_17335	0.22	+1.5
3,672,068	+		IAI47_17335	0.22	+0.9
3,672,068	+		IAI47_17335	0.22	+0.0
3,672,068	+		IAI47_17335	0.22	+1.6
3,672,068	+		IAI47_17335	0.22	+1.3
3,672,068	+		IAI47_17335	0.22	+1.0
3,672,068	+		IAI47_17335	0.22	-0.2
3,672,068	+		IAI47_17335	0.22	+0.3
3,672,068	+		IAI47_17335	0.22	+0.2
3,672,068	+		IAI47_17335	0.22	+0.2
3,672,068	+		IAI47_17335	0.22	+1.2
3,672,068	+		IAI47_17335	0.22	+0.7
3,672,069	-		IAI47_17335	0.22	+0.7
3,672,069	-		IAI47_17335	0.22	-0.4
3,672,069	-		IAI47_17335	0.22	-1.7
3,672,069	-		IAI47_17335	0.22	+1.8
3,672,069	-		IAI47_17335	0.22	+1.3
3,672,069	-		IAI47_17335	0.22	+0.5
3,672,135	+		IAI47_17335	0.25	+0.3
3,672,241	+		IAI47_17335	0.32	+1.0
3,672,241	+		IAI47_17335	0.32	+0.3
3,672,241	+		IAI47_17335	0.32	+0.6
3,672,241	+		IAI47_17335	0.32	+1.5
3,672,242	-		IAI47_17335	0.32	-1.3
3,672,242	-		IAI47_17335	0.32	+1.1
3,672,263	+		IAI47_17335	0.33	-0.6
3,672,263	+		IAI47_17335	0.33	+0.8
3,672,264	-		IAI47_17335	0.33	+1.3
3,672,264	-		IAI47_17335	0.33	+0.6
3,672,283	+		IAI47_17335	0.34	+2.3
3,672,283	+		IAI47_17335	0.34	-0.4
3,672,306	-		IAI47_17335	0.36	+0.7
3,672,321	+		IAI47_17335	0.36	-0.4
3,672,322	-		IAI47_17335	0.36	+0.7
3,672,322	-		IAI47_17335	0.36	-0.2
3,672,341	+		IAI47_17335	0.38	+1.8
3,672,341	+		IAI47_17335	0.38	-0.5
3,672,341	+		IAI47_17335	0.38	-0.3
3,672,341	+		IAI47_17335	0.38	+0.9
3,672,341	+		IAI47_17335	0.38	+0.7
3,672,341	+		IAI47_17335	0.38	+0.8
3,672,342	-		IAI47_17335	0.38	+2.0
3,672,342	-		IAI47_17335	0.38	-0.2
3,672,342	-		IAI47_17335	0.38	-1.4