Strain Fitness in Pantoea sp. MT58 around IAI47_16240

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,438,947	+				+1.6
3,438,947	+				+0.6
3,438,947	+				-1.5
3,438,948	-				+0.6
3,438,948	-				-0.5
3,438,948	-				+0.6
3,438,948	-				+0.1
3,438,948	-				+1.9
3,438,948	-				+0.0
3,438,971	+				-0.7
3,438,972	-				+0.0
3,439,019	+				-0.6
3,439,019	+				-0.2
3,439,019	+				-1.0
3,439,019	+				+2.2
3,439,019	+				+0.3
3,439,020	-				-0.8
3,439,020	-				-1.5
3,439,020	-				-0.4
3,439,020	-				+0.0
3,439,020	-				-1.3
3,439,020	-				+0.8
3,439,020	-				-0.1
3,439,020	-				-2.3
3,439,020	-				-1.0
3,439,020	-				-0.8
3,439,036	+				-0.7
3,439,036	+				+0.5
3,439,036	+				+0.7
3,439,036	+				+0.9
3,439,036	+				-0.0
3,439,036	+				-3.2
3,439,037	-				+1.5
3,439,037	-				+0.1
3,439,037	-				-0.3
3,439,053	-				+0.8
3,439,109	-		IAI47_16235	0.15	-0.5
3,439,109	-		IAI47_16235	0.15	+0.5
3,439,117	+		IAI47_16235	0.17	-0.4
3,439,117	+		IAI47_16235	0.17	-2.0
3,439,117	+		IAI47_16235	0.17	+2.4
3,439,118	-		IAI47_16235	0.17	-1.1
3,439,118	-		IAI47_16235	0.17	-0.4
3,439,118	-		IAI47_16235	0.17	-2.4
3,439,118	-		IAI47_16235	0.17	-0.6
3,439,118	-		IAI47_16235	0.17	+0.2
3,439,145	-		IAI47_16235	0.23	-1.0
3,439,145	-		IAI47_16235	0.23	+0.6
3,439,169	+		IAI47_16235	0.28	-2.1
3,439,169	+		IAI47_16235	0.28	+1.5
3,439,169	+		IAI47_16235	0.28	-1.2
3,439,176	+		IAI47_16235	0.29	-0.1
3,439,176	+		IAI47_16235	0.29	-0.3
3,439,177	-		IAI47_16235	0.29	-1.5
3,439,177	-		IAI47_16235	0.29	-0.8
3,439,177	-		IAI47_16235	0.29	-2.2
3,439,197	+		IAI47_16235	0.34	-0.8
3,439,198	-		IAI47_16235	0.34	-0.8
3,439,198	-		IAI47_16235	0.34	-1.1
3,439,198	-		IAI47_16235	0.34	-0.7
3,439,198	-		IAI47_16235	0.34	+0.2
3,439,198	-		IAI47_16235	0.34	+1.0
3,439,200	+		IAI47_16235	0.34	-1.9
3,439,200	+		IAI47_16235	0.34	-0.4
3,439,200	+		IAI47_16235	0.34	+0.5
3,439,200	+		IAI47_16235	0.34	-0.5
3,439,200	+		IAI47_16235	0.34	+1.5
3,439,200	+		IAI47_16235	0.34	+0.5
3,439,201	-		IAI47_16235	0.34	-0.9
3,439,201	-		IAI47_16235	0.34	-1.1
3,439,201	-		IAI47_16235	0.34	-0.4
3,439,232	+		IAI47_16235	0.41	-1.4
3,439,286	+		IAI47_16235	0.52	-0.5
3,439,286	+		IAI47_16235	0.52	+1.4
3,439,286	+		IAI47_16235	0.52	-2.9
3,439,286	+		IAI47_16235	0.52	-0.3
3,439,287	-		IAI47_16235	0.53	+0.0
3,439,287	-		IAI47_16235	0.53	-1.2
3,439,287	-		IAI47_16235	0.53	+0.2
3,439,340	+		IAI47_16235	0.64	+0.0
3,439,340	+		IAI47_16235	0.64	-0.4
3,439,341	-		IAI47_16235	0.64	-2.4
3,439,341	-		IAI47_16235	0.64	+0.1
3,439,341	-		IAI47_16235	0.64	-1.4
3,439,342	+		IAI47_16235	0.64	-2.0
3,439,342	+		IAI47_16235	0.64	-1.6
3,439,342	+		IAI47_16235	0.64	-0.1
3,439,342	+		IAI47_16235	0.64	-0.4
3,439,342	+		IAI47_16235	0.64	-2.6
3,439,343	-		IAI47_16235	0.64	+0.5
3,439,343	-		IAI47_16235	0.64	-0.5
3,439,343	-		IAI47_16235	0.64	+0.2
3,439,343	-		IAI47_16235	0.64	+0.7
3,439,343	-		IAI47_16235	0.64	+2.7
3,439,350	+		IAI47_16235	0.66	-1.4
3,439,351	-		IAI47_16235	0.66	+0.2
3,439,388	+		IAI47_16235	0.74	-1.7
3,439,388	+		IAI47_16235	0.74	-1.3
3,439,388	+		IAI47_16235	0.74	-2.3
3,439,388	+		IAI47_16235	0.74	-0.3
3,439,388	+		IAI47_16235	0.74	+0.3
3,439,389	-		IAI47_16235	0.74	-1.6
3,439,389	-		IAI47_16235	0.74	-1.6
3,439,389	-		IAI47_16235	0.74	-1.4
3,439,389	-		IAI47_16235	0.74	-0.7
3,439,410	+		IAI47_16235	0.78	+1.2
3,439,410	+		IAI47_16235	0.78	-0.2
3,439,411	-		IAI47_16235	0.79	-2.0
3,439,424	+		IAI47_16235	0.81	-2.0
3,439,425	-		IAI47_16235	0.82	+0.1
3,439,425	-		IAI47_16235	0.82	-0.5
3,439,425	-		IAI47_16235	0.82	-1.0
3,439,425	-		IAI47_16235	0.82	+1.1
3,439,475	+				-2.4
3,439,475	+				-0.3
3,439,475	+				-2.2
3,439,476	-				+1.4
3,439,493	+				-2.3
3,439,493	+				+0.6
3,439,493	+				+0.8
3,439,493	+				-0.6
3,439,493	+				-1.5
3,439,493	+				-1.8
3,439,493	+				-1.0
3,439,493	+				-1.6
3,439,493	+				-0.5
3,439,493	+				+0.0
3,439,493	+				-0.4
3,439,493	+				-2.4
3,439,493	+				-1.1
3,439,494	-				+1.3
3,439,494	-				-0.4
3,439,504	-				-0.1
3,439,504	-				-1.2
3,439,517	+				-0.5
3,439,518	-				+0.9
3,439,535	-				+1.7
3,439,535	-				+1.4
3,439,535	-				+0.1
3,439,546	+				-0.3
3,439,546	+				+1.0
3,439,546	+				-1.0
3,439,546	+				+1.5
3,439,546	+				-0.9
3,439,546	+				-1.2
3,439,546	+				+0.7
3,439,546	+				+1.2
3,439,546	+				-0.1
3,439,546	+				-1.2
3,439,546	+				-1.2
3,439,547	-				-1.0
3,439,547	-				+1.8
3,439,547	-				-1.2
3,439,547	-				+1.2
3,439,547	-				-0.6
3,439,547	-				-0.6
3,439,547	-				-2.4
3,439,547	-				+1.6
3,439,547	-				-1.2
3,439,547	-				-0.2
3,439,547	-				+0.9
3,439,551	+				+1.1
3,439,551	+				+2.3
3,439,551	+				+0.3
3,439,552	-				+1.7
3,439,552	-				+2.2
3,439,552	-				+1.9
3,439,552	-				-1.3
3,439,557	+				-1.3
3,439,564	+				-0.5
3,439,564	+				-0.6
3,439,564	+				-2.9
3,439,565	-				+1.4
3,439,591	-				+0.3
3,439,605	+				+0.1
3,439,606	-				+0.1
3,439,606	-				+0.6
3,439,655	+				-0.6
3,439,655	+				+0.3
3,439,656	-				+0.1
3,439,656	-				-0.8
3,439,659	-				+0.8
3,439,675	+				+2.8
3,439,675	+				+0.5
3,439,676	-				+0.3
3,439,676	-				-0.6
3,439,692	+				+0.2
3,439,692	+				+0.4
3,439,692	+				+1.3
3,439,692	+				+0.4
3,439,693	-				-0.1
3,439,704	+				+0.7
3,439,704	+				+0.6
3,439,704	+				+0.8
3,439,704	+				+0.1
3,439,806	+		IAI47_16240	0.11	+1.8
3,439,806	+		IAI47_16240	0.11	+2.7
3,439,806	+		IAI47_16240	0.11	+1.2
3,439,807	-		IAI47_16240	0.12	+1.5
3,439,807	-		IAI47_16240	0.12	+2.0
3,439,807	-		IAI47_16240	0.12	-0.1
3,439,807	-		IAI47_16240	0.12	+1.6
3,439,861	+		IAI47_16240	0.18	+2.3
3,439,861	+		IAI47_16240	0.18	-0.0
3,439,861	+		IAI47_16240	0.18	+1.7
3,439,862	-		IAI47_16240	0.18	+2.1
3,439,862	-		IAI47_16240	0.18	+3.1
3,439,862	-		IAI47_16240	0.18	-0.5
3,439,862	-		IAI47_16240	0.18	+1.3
3,439,862	-		IAI47_16240	0.18	+2.2
3,439,862	-		IAI47_16240	0.18	+2.1
3,439,862	-		IAI47_16240	0.18	+2.1
3,439,862	-		IAI47_16240	0.18	+1.4
3,439,864	-		IAI47_16240	0.18	-0.1
3,439,969	-		IAI47_16240	0.30	+0.8
3,440,137	+		IAI47_16240	0.49	-0.1
3,440,137	+		IAI47_16240	0.49	-3.4
3,440,137	+		IAI47_16240	0.49	+0.4
3,440,137	+		IAI47_16240	0.49	-0.6
3,440,137	+		IAI47_16240	0.49	+0.1
3,440,137	+		IAI47_16240	0.49	+0.7
3,440,137	+		IAI47_16240	0.49	-0.4
3,440,137	+		IAI47_16240	0.49	-0.2
3,440,137	+		IAI47_16240	0.49	-0.3
3,440,137	+		IAI47_16240	0.49	-1.1
3,440,137	+		IAI47_16240	0.49	+1.5
3,440,137	+		IAI47_16240	0.49	-1.5
3,440,137	+		IAI47_16240	0.49	+0.2
3,440,137	+		IAI47_16240	0.49	+0.9
3,440,137	+		IAI47_16240	0.49	-2.7
3,440,138	-		IAI47_16240	0.49	+0.2
3,440,138	-		IAI47_16240	0.49	+0.1
3,440,138	-		IAI47_16240	0.49	+0.9
3,440,138	-		IAI47_16240	0.49	-0.5
3,440,138	-		IAI47_16240	0.49	+1.4
3,440,138	-		IAI47_16240	0.49	-0.3
3,440,138	-		IAI47_16240	0.49	-1.3
3,440,138	-		IAI47_16240	0.49	-2.2
3,440,138	-		IAI47_16240	0.49	-2.6
3,440,146	-		IAI47_16240	0.50	+0.1
3,440,168	-		IAI47_16240	0.52	+1.1
3,440,240	-		IAI47_16240	0.60	+2.2
3,440,240	-		IAI47_16240	0.60	+0.5
3,440,296	+		IAI47_16240	0.67	+0.3
3,440,296	+		IAI47_16240	0.67	-2.0
3,440,297	-		IAI47_16240	0.67	+1.2
3,440,297	-		IAI47_16240	0.67	-0.0
3,440,297	-		IAI47_16240	0.67	+1.1
3,440,298	+		IAI47_16240	0.67	+0.3
3,440,298	+		IAI47_16240	0.67	+0.7
3,440,299	-		IAI47_16240	0.67	+0.0
3,440,299	-		IAI47_16240	0.67	+3.4
3,440,299	-		IAI47_16240	0.67	+1.8
3,440,299	-		IAI47_16240	0.67	+0.8
3,440,371	+		IAI47_16240	0.75	+0.6
3,440,371	+		IAI47_16240	0.75	+0.8
3,440,371	+		IAI47_16240	0.75	+0.7
3,440,371	+		IAI47_16240	0.75	+1.7
3,440,371	+		IAI47_16240	0.75	+1.3
3,440,371	+		IAI47_16240	0.75	+1.8
3,440,372	-		IAI47_16240	0.75	+1.1
3,440,372	-		IAI47_16240	0.75	+1.5
3,440,432	-		IAI47_16240	0.82	+0.8
3,440,432	-		IAI47_16240	0.82	+1.0
3,440,437	-		IAI47_16240	0.83	+2.7
3,440,481	+		IAI47_16240	0.88	+1.4
3,440,482	-		IAI47_16240	0.88	-0.9
3,440,482	-		IAI47_16240	0.88	+3.5
3,440,494	+		IAI47_16240	0.89	+1.3
3,440,494	+		IAI47_16240	0.89	+1.1
3,440,495	-		IAI47_16240	0.89	+0.5
3,440,495	-		IAI47_16240	0.89	+0.6
3,440,495	-		IAI47_16240	0.89	+0.6
3,440,495	-		IAI47_16240	0.89	+0.9
3,440,496	+		IAI47_16240	0.89	+1.6
3,440,497	-		IAI47_16240	0.89	+1.7
3,440,497	-		IAI47_16240	0.89	+0.9
3,440,497	-		IAI47_16240	0.89	-0.2
3,440,497	-		IAI47_16240	0.89	+0.4
3,440,533	+				-0.8
3,440,549	-				+1.7
3,440,587	+				+2.0
3,440,588	-				+0.7
3,440,588	-				+3.9
3,440,588	-				+1.0
3,440,588	-				+0.7
3,440,593	+				-0.4
3,440,594	-				+0.5
3,440,622	+				-0.6
3,440,622	+				+2.2
3,440,622	+				+0.9
3,440,622	+				-1.2
3,440,623	-				+0.4
3,440,623	-				+0.5
3,440,673	+				+0.2
3,440,674	-				+1.5
3,440,674	-				+0.8
3,440,674	-				+0.1
3,440,689	+				-0.5
3,440,689	+				-0.7
3,440,690	-				+1.9
3,440,726	+		IAI47_16245	0.15	+0.2
3,440,726	+		IAI47_16245	0.15	-0.6
3,440,742	+		IAI47_16245	0.17	-0.9
3,440,742	+		IAI47_16245	0.17	-1.6
3,440,743	-		IAI47_16245	0.18	-0.2
3,440,743	-		IAI47_16245	0.18	-1.3
3,440,751	+		IAI47_16245	0.19	-1.3
3,440,751	+		IAI47_16245	0.19	-2.0
3,440,751	+		IAI47_16245	0.19	+1.5
3,440,751	+		IAI47_16245	0.19	-1.0
3,440,751	+		IAI47_16245	0.19	+1.7
3,440,752	-		IAI47_16245	0.19	-1.0
3,440,752	-		IAI47_16245	0.19	-1.0
3,440,777	+		IAI47_16245	0.23	-0.1
3,440,799	+		IAI47_16245	0.26	+0.3
3,440,799	+		IAI47_16245	0.26	-0.6
3,440,799	+		IAI47_16245	0.26	-0.6
3,440,800	-		IAI47_16245	0.26	-0.8
3,440,800	-		IAI47_16245	0.26	-0.5
3,440,823	+		IAI47_16245	0.30	+1.7
3,440,823	+		IAI47_16245	0.30	+0.5
3,440,823	+		IAI47_16245	0.30	+0.2
3,440,990	-		IAI47_16245	0.56	-0.8
3,440,990	-		IAI47_16245	0.56	+1.3
3,440,990	-		IAI47_16245	0.56	+2.4
3,441,024	+		IAI47_16245	0.61	-1.1
3,441,024	+		IAI47_16245	0.61	-1.1
3,441,024	+		IAI47_16245	0.61	-0.8
3,441,024	+		IAI47_16245	0.61	-1.3
3,441,024	+		IAI47_16245	0.61	-0.4
3,441,025	-		IAI47_16245	0.61	+1.3
3,441,123	+		IAI47_16245	0.76	-1.9
3,441,123	+		IAI47_16245	0.76	+0.0
3,441,123	+		IAI47_16245	0.76	+0.7
3,441,123	+		IAI47_16245	0.76	-0.3
3,441,123	+		IAI47_16245	0.76	+0.2
3,441,123	+		IAI47_16245	0.76	+1.3
3,441,123	+		IAI47_16245	0.76	-2.8
3,441,123	+		IAI47_16245	0.76	+0.3
3,441,123	+		IAI47_16245	0.76	+0.9
3,441,124	-		IAI47_16245	0.76	+0.7
3,441,124	-		IAI47_16245	0.76	-0.4
3,441,124	-		IAI47_16245	0.76	+0.1
3,441,124	-		IAI47_16245	0.76	-0.0
3,441,173	-		IAI47_16245	0.84	-0.1
3,441,219	+				+0.2
3,441,220	-				+0.5
3,441,263	+				-1.4
3,441,263	+				+1.1
3,441,263	+				-0.5
3,441,264	-				-0.1
3,441,264	-				-0.1
3,441,264	-				-0.1
3,441,264	-				-0.5
3,441,264	-				-0.4
3,441,264	-				-0.0
3,441,271	+				+0.7
3,441,271	+				+0.0
3,441,271	+				-2.0
3,441,271	+				-0.1
3,441,271	+				-0.4
3,441,271	+				+1.9
3,441,271	+				-0.0
3,441,271	+				-2.0
3,441,271	+				+1.4
3,441,271	+				-0.0
3,441,272	-				+0.2
3,441,272	-				+1.2
3,441,272	-				+0.7
3,441,272	-				+0.9
3,441,272	-				-0.5
3,441,272	-				+1.5
3,441,272	-				-0.7
3,441,279	+				+0.2
3,441,279	+				+0.8
3,441,280	-				-0.8
3,441,280	-				+1.3
3,441,280	-				+0.5
3,441,280	-				+0.8
3,441,290	-				+0.2
3,441,291	+				-0.2
3,441,291	+				+0.5
3,441,291	+				+3.3
3,441,291	+				+0.2
3,441,292	-				+1.3
3,441,312	-				+0.2
3,441,389	+				+0.7
3,441,389	+				+1.5
3,441,389	+				+0.3
3,441,390	-				+2.5
3,441,390	-				+1.2
3,441,390	-				+0.9
3,441,390	-				+0.7
3,441,457	+				+1.7
3,441,458	-				-0.6
3,441,473	+				+0.7
3,441,481	+				+1.0
3,441,481	+				-0.5
3,441,481	+				+2.3
3,441,481	+				-0.6
3,441,481	+				-0.9
3,441,481	+				-1.2
3,441,481	+				-2.6
3,441,481	+				-1.0
3,441,481	+				-0.8
3,441,482	-				-0.2
3,441,482	-				-2.0
3,441,482	-				+0.6
3,441,482	-				-1.2
3,441,482	-				-0.6
3,441,482	-				+0.7
3,441,482	-				+0.1
3,441,482	-				-1.4
3,441,482	-				-0.1
3,441,482	-				+0.5
3,441,482	-				+1.2
3,441,482	-				-0.0
3,441,485	+				+0.6
3,441,485	+				-0.5
3,441,485	+				-0.7
3,441,485	+				+0.2
3,441,485	+				-0.9
3,441,486	-				+0.4
3,441,486	-				+0.8
3,441,486	-				-0.2
3,441,486	-				-1.8
3,441,486	-				-0.1
3,441,486	-				-0.1
3,441,486	-				-1.6
3,441,486	-				+0.5
3,441,486	-				+0.5
3,441,486	-				+0.5
3,441,574	+		IAI47_16250	0.18	-1.9
3,441,574	+		IAI47_16250	0.18	+0.6
3,441,574	+		IAI47_16250	0.18	+0.7
3,441,575	-		IAI47_16250	0.18	-0.1
3,441,575	-		IAI47_16250	0.18	-0.1