Strain Fitness in Pantoea sp. MT58 around IAI47_08325

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_08320 and IAI47_08325 are separated by 80 nucleotidesIAI47_08325 and IAI47_08330 overlap by 1 nucleotides IAI47_08320: IAI47_08320 - Tar ligand binding domain-containing protein, at 1,761,950 to 1,763,626 _08320 IAI47_08325: IAI47_08325 - protein-glutamate O-methyltransferase CheR, at 1,763,707 to 1,764,579 _08325 IAI47_08330: IAI47_08330 - chemotaxis response regulator protein-glutamate methylesterase, at 1,764,579 to 1,765,628 _08330 Position (kb) 1763 1764 1765Strain fitness (log2 ratio) -2 -1 0 1 2at 1762.744 kb on + strand, within IAI47_08320at 1762.781 kb on + strand, within IAI47_08320at 1762.781 kb on + strand, within IAI47_08320at 1762.781 kb on + strand, within IAI47_08320at 1762.781 kb on + strand, within IAI47_08320at 1762.781 kb on + strand, within IAI47_08320at 1762.781 kb on + strand, within IAI47_08320at 1762.781 kb on + strand, within IAI47_08320at 1762.781 kb on + strand, within IAI47_08320at 1762.781 kb on + strand, within IAI47_08320at 1762.781 kb on + strand, within IAI47_08320at 1762.781 kb on + strand, within IAI47_08320at 1762.782 kb on - strand, within IAI47_08320at 1762.782 kb on - strand, within IAI47_08320at 1762.782 kb on - strand, within IAI47_08320at 1762.782 kb on - strand, within IAI47_08320at 1762.782 kb on - strand, within IAI47_08320at 1762.782 kb on - strand, within IAI47_08320at 1762.782 kb on - strand, within IAI47_08320at 1762.782 kb on - strand, within IAI47_08320at 1762.782 kb on - strand, within IAI47_08320at 1763.023 kb on + strand, within IAI47_08320at 1763.024 kb on - strand, within IAI47_08320at 1763.024 kb on - strand, within IAI47_08320at 1763.177 kb on - strand, within IAI47_08320at 1763.200 kb on + strand, within IAI47_08320at 1763.200 kb on + strand, within IAI47_08320at 1763.201 kb on - strand, within IAI47_08320at 1763.236 kb on + strand, within IAI47_08320at 1763.253 kb on + strand, within IAI47_08320at 1763.253 kb on + strand, within IAI47_08320at 1763.254 kb on - strand, within IAI47_08320at 1763.254 kb on - strand, within IAI47_08320at 1763.399 kb on - strand, within IAI47_08320at 1763.472 kb on + strandat 1763.472 kb on + strandat 1763.473 kb on - strandat 1763.473 kb on - strandat 1763.497 kb on + strandat 1763.559 kb on + strandat 1763.559 kb on + strandat 1763.560 kb on - strandat 1763.560 kb on - strandat 1763.624 kb on + strandat 1763.625 kb on - strandat 1763.625 kb on - strandat 1763.650 kb on - strandat 1763.650 kb on - strandat 1763.677 kb on + strandat 1763.677 kb on + strandat 1763.677 kb on + strandat 1763.677 kb on + strandat 1763.677 kb on + strandat 1763.677 kb on + strandat 1763.677 kb on + strandat 1763.677 kb on + strandat 1763.677 kb on + strandat 1763.677 kb on + strandat 1763.677 kb on + strandat 1763.678 kb on - strandat 1763.678 kb on - strandat 1763.682 kb on + strandat 1763.682 kb on + strandat 1763.682 kb on + strandat 1763.682 kb on + strandat 1763.682 kb on + strandat 1763.682 kb on + strandat 1763.682 kb on + strandat 1763.683 kb on - strandat 1763.683 kb on - strandat 1763.683 kb on - strandat 1763.683 kb on - strandat 1763.686 kb on - strandat 1763.686 kb on - strandat 1763.727 kb on - strandat 1763.818 kb on + strand, within IAI47_08325at 1763.818 kb on + strand, within IAI47_08325at 1763.818 kb on + strand, within IAI47_08325at 1763.819 kb on - strand, within IAI47_08325at 1763.819 kb on - strand, within IAI47_08325at 1763.819 kb on - strand, within IAI47_08325at 1763.819 kb on - strand, within IAI47_08325at 1763.819 kb on - strand, within IAI47_08325at 1763.838 kb on - strand, within IAI47_08325at 1763.838 kb on - strand, within IAI47_08325at 1763.866 kb on + strand, within IAI47_08325at 1763.867 kb on - strand, within IAI47_08325at 1763.892 kb on + strand, within IAI47_08325at 1763.920 kb on + strand, within IAI47_08325at 1763.921 kb on - strand, within IAI47_08325at 1763.971 kb on - strand, within IAI47_08325at 1764.048 kb on + strand, within IAI47_08325at 1764.048 kb on + strand, within IAI47_08325at 1764.048 kb on + strand, within IAI47_08325at 1764.048 kb on + strand, within IAI47_08325at 1764.048 kb on + strand, within IAI47_08325at 1764.049 kb on - strand, within IAI47_08325at 1764.078 kb on + strand, within IAI47_08325at 1764.106 kb on + strand, within IAI47_08325at 1764.106 kb on + strand, within IAI47_08325at 1764.107 kb on - strand, within IAI47_08325at 1764.107 kb on - strand, within IAI47_08325at 1764.107 kb on - strand, within IAI47_08325at 1764.184 kb on - strand, within IAI47_08325at 1764.191 kb on + strand, within IAI47_08325at 1764.192 kb on - strand, within IAI47_08325at 1764.298 kb on - strand, within IAI47_08325at 1764.298 kb on - strand, within IAI47_08325at 1764.327 kb on + strand, within IAI47_08325at 1764.327 kb on + strand, within IAI47_08325at 1764.327 kb on + strand, within IAI47_08325at 1764.328 kb on - strand, within IAI47_08325at 1764.337 kb on + strand, within IAI47_08325at 1764.349 kb on - strand, within IAI47_08325at 1764.418 kb on + strand, within IAI47_08325at 1764.418 kb on + strand, within IAI47_08325at 1764.418 kb on + strand, within IAI47_08325at 1764.419 kb on - strand, within IAI47_08325at 1764.470 kb on + strand, within IAI47_08325at 1764.471 kb on - strand, within IAI47_08325at 1764.526 kb on - strandat 1764.557 kb on - strandat 1764.557 kb on - strandat 1764.604 kb on + strandat 1764.604 kb on + strandat 1764.604 kb on + strandat 1764.604 kb on + strandat 1764.604 kb on + strandat 1764.604 kb on + strandat 1764.605 kb on - strandat 1764.605 kb on - strandat 1764.605 kb on - strandat 1764.605 kb on - strandat 1764.605 kb on - strandat 1764.605 kb on - strandat 1764.641 kb on + strandat 1764.664 kb on - strandat 1764.677 kb on + strandat 1764.855 kb on - strand, within IAI47_08330at 1764.934 kb on - strand, within IAI47_08330at 1764.934 kb on - strand, within IAI47_08330at 1764.987 kb on - strand, within IAI47_08330at 1765.040 kb on + strand, within IAI47_08330at 1765.111 kb on + strand, within IAI47_08330at 1765.139 kb on + strand, within IAI47_08330at 1765.148 kb on + strand, within IAI47_08330at 1765.148 kb on + strand, within IAI47_08330at 1765.148 kb on + strand, within IAI47_08330at 1765.148 kb on + strand, within IAI47_08330at 1765.148 kb on + strand, within IAI47_08330at 1765.149 kb on - strand, within IAI47_08330at 1765.163 kb on + strand, within IAI47_08330at 1765.163 kb on + strand, within IAI47_08330at 1765.210 kb on + strand, within IAI47_08330at 1765.235 kb on + strand, within IAI47_08330at 1765.235 kb on + strand, within IAI47_08330at 1765.235 kb on + strand, within IAI47_08330at 1765.235 kb on + strand, within IAI47_08330at 1765.254 kb on + strand, within IAI47_08330at 1765.254 kb on + strand, within IAI47_08330at 1765.254 kb on + strand, within IAI47_08330at 1765.255 kb on - strand, within IAI47_08330at 1765.255 kb on - strand, within IAI47_08330at 1765.255 kb on - strand, within IAI47_08330at 1765.257 kb on - strand, within IAI47_08330at 1765.305 kb on + strand, within IAI47_08330at 1765.305 kb on + strand, within IAI47_08330at 1765.305 kb on + strand, within IAI47_08330at 1765.305 kb on + strand, within IAI47_08330at 1765.305 kb on + strand, within IAI47_08330at 1765.305 kb on + strand, within IAI47_08330at 1765.305 kb on + strand, within IAI47_08330at 1765.305 kb on + strand, within IAI47_08330at 1765.305 kb on + strand, within IAI47_08330at 1765.306 kb on - strand, within IAI47_08330at 1765.306 kb on - strand, within IAI47_08330at 1765.306 kb on - strand, within IAI47_08330at 1765.306 kb on - strand, within IAI47_08330at 1765.306 kb on - strand, within IAI47_08330at 1765.306 kb on - strand, within IAI47_08330at 1765.306 kb on - strand, within IAI47_08330at 1765.306 kb on - strand, within IAI47_08330at 1765.306 kb on - strand, within IAI47_08330at 1765.306 kb on - strand, within IAI47_08330at 1765.306 kb on - strand, within IAI47_08330at 1765.510 kb on + strand, within IAI47_08330at 1765.510 kb on + strand, within IAI47_08330at 1765.511 kb on - strand, within IAI47_08330at 1765.511 kb on - strand, within IAI47_08330at 1765.533 kb on - strandat 1765.561 kb on + strandat 1765.567 kb on + strandat 1765.567 kb on + strandat 1765.567 kb on + strandat 1765.567 kb on + strandat 1765.567 kb on + strandat 1765.567 kb on + strandat 1765.568 kb on - strandat 1765.568 kb on - strandat 1765.568 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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1,762,744 + IAI47_08320 0.47 -0.3
1,762,781 + IAI47_08320 0.50 -2.4
1,762,781 + IAI47_08320 0.50 +0.3
1,762,781 + IAI47_08320 0.50 -0.3
1,762,781 + IAI47_08320 0.50 +0.6
1,762,781 + IAI47_08320 0.50 +0.5
1,762,781 + IAI47_08320 0.50 +1.7
1,762,781 + IAI47_08320 0.50 +0.1
1,762,781 + IAI47_08320 0.50 -1.8
1,762,781 + IAI47_08320 0.50 +0.1
1,762,781 + IAI47_08320 0.50 -1.3
1,762,781 + IAI47_08320 0.50 -1.3
1,762,782 - IAI47_08320 0.50 +1.0
1,762,782 - IAI47_08320 0.50 +0.3
1,762,782 - IAI47_08320 0.50 +1.2
1,762,782 - IAI47_08320 0.50 -0.6
1,762,782 - IAI47_08320 0.50 +0.8
1,762,782 - IAI47_08320 0.50 -0.1
1,762,782 - IAI47_08320 0.50 -2.1
1,762,782 - IAI47_08320 0.50 +1.2
1,762,782 - IAI47_08320 0.50 +1.0
1,763,023 + IAI47_08320 0.64 +0.4
1,763,024 - IAI47_08320 0.64 -1.1
1,763,024 - IAI47_08320 0.64 +0.2
1,763,177 - IAI47_08320 0.73 -0.7
1,763,200 + IAI47_08320 0.75 -2.6
1,763,200 + IAI47_08320 0.75 +0.2
1,763,201 - IAI47_08320 0.75 +0.9
1,763,236 + IAI47_08320 0.77 +0.7
1,763,253 + IAI47_08320 0.78 +1.3
1,763,253 + IAI47_08320 0.78 +0.6
1,763,254 - IAI47_08320 0.78 +1.3
1,763,254 - IAI47_08320 0.78 -1.0
1,763,399 - IAI47_08320 0.86 +1.8
1,763,472 + -1.4
1,763,472 + +0.6
1,763,473 - +1.9
1,763,473 - +0.9
1,763,497 + -1.2
1,763,559 + +2.0
1,763,559 + -0.2
1,763,560 - -0.8
1,763,560 - -0.2
1,763,624 + +0.7
1,763,625 - -0.7
1,763,625 - -2.2
1,763,650 - -0.8
1,763,650 - +0.1
1,763,677 + +0.3
1,763,677 + +1.6
1,763,677 + -0.7
1,763,677 + +0.1
1,763,677 + +0.5
1,763,677 + -1.7
1,763,677 + -0.6
1,763,677 + +0.9
1,763,677 + +2.2
1,763,677 + +0.7
1,763,677 + +0.4
1,763,678 - +0.9
1,763,678 - -1.1
1,763,682 + +1.3
1,763,682 + -1.5
1,763,682 + +0.7
1,763,682 + -0.7
1,763,682 + +0.8
1,763,682 + +0.3
1,763,682 + -0.5
1,763,683 - +0.0
1,763,683 - -0.6
1,763,683 - -1.4
1,763,683 - -0.2
1,763,686 - +1.3
1,763,686 - -1.0
1,763,727 - +0.5
1,763,818 + IAI47_08325 0.13 -1.1
1,763,818 + IAI47_08325 0.13 -0.7
1,763,818 + IAI47_08325 0.13 -0.4
1,763,819 - IAI47_08325 0.13 -2.0
1,763,819 - IAI47_08325 0.13 +1.0
1,763,819 - IAI47_08325 0.13 -2.1
1,763,819 - IAI47_08325 0.13 -1.3
1,763,819 - IAI47_08325 0.13 -1.2
1,763,838 - IAI47_08325 0.15 -0.4
1,763,838 - IAI47_08325 0.15 -1.6
1,763,866 + IAI47_08325 0.18 +0.0
1,763,867 - IAI47_08325 0.18 -0.5
1,763,892 + IAI47_08325 0.21 -1.1
1,763,920 + IAI47_08325 0.24 +0.8
1,763,921 - IAI47_08325 0.25 -0.6
1,763,971 - IAI47_08325 0.30 -2.5
1,764,048 + IAI47_08325 0.39 -1.7
1,764,048 + IAI47_08325 0.39 -1.2
1,764,048 + IAI47_08325 0.39 -0.7
1,764,048 + IAI47_08325 0.39 -0.9
1,764,048 + IAI47_08325 0.39 -0.3
1,764,049 - IAI47_08325 0.39 +1.2
1,764,078 + IAI47_08325 0.42 -0.4
1,764,106 + IAI47_08325 0.46 -0.0
1,764,106 + IAI47_08325 0.46 -0.0
1,764,107 - IAI47_08325 0.46 -1.5
1,764,107 - IAI47_08325 0.46 -1.5
1,764,107 - IAI47_08325 0.46 +0.6
1,764,184 - IAI47_08325 0.55 -1.8
1,764,191 + IAI47_08325 0.55 -1.0
1,764,192 - IAI47_08325 0.56 -0.2
1,764,298 - IAI47_08325 0.68 -0.4
1,764,298 - IAI47_08325 0.68 -1.0
1,764,327 + IAI47_08325 0.71 +0.5
1,764,327 + IAI47_08325 0.71 +0.6
1,764,327 + IAI47_08325 0.71 -0.6
1,764,328 - IAI47_08325 0.71 -1.4
1,764,337 + IAI47_08325 0.72 -1.2
1,764,349 - IAI47_08325 0.74 -0.4
1,764,418 + IAI47_08325 0.81 -0.9
1,764,418 + IAI47_08325 0.81 -0.7
1,764,418 + IAI47_08325 0.81 -0.3
1,764,419 - IAI47_08325 0.82 -0.2
1,764,470 + IAI47_08325 0.87 +0.2
1,764,471 - IAI47_08325 0.88 +0.2
1,764,526 - +0.4
1,764,557 - +0.8
1,764,557 - -1.4
1,764,604 + +0.3
1,764,604 + +0.1
1,764,604 + +0.8
1,764,604 + -0.6
1,764,604 + -1.2
1,764,604 + +0.7
1,764,605 - -0.8
1,764,605 - -0.2
1,764,605 - +0.8
1,764,605 - +0.4
1,764,605 - +0.7
1,764,605 - -0.4
1,764,641 + +1.9
1,764,664 - +0.3
1,764,677 + -0.1
1,764,855 - IAI47_08330 0.26 -0.7
1,764,934 - IAI47_08330 0.34 -1.4
1,764,934 - IAI47_08330 0.34 +0.8
1,764,987 - IAI47_08330 0.39 -1.3
1,765,040 + IAI47_08330 0.44 +1.9
1,765,111 + IAI47_08330 0.51 +1.2
1,765,139 + IAI47_08330 0.53 -1.0
1,765,148 + IAI47_08330 0.54 +1.1
1,765,148 + IAI47_08330 0.54 -0.6
1,765,148 + IAI47_08330 0.54 +0.5
1,765,148 + IAI47_08330 0.54 -0.2
1,765,148 + IAI47_08330 0.54 +0.5
1,765,149 - IAI47_08330 0.54 -0.6
1,765,163 + IAI47_08330 0.56 -0.0
1,765,163 + IAI47_08330 0.56 -1.3
1,765,210 + IAI47_08330 0.60 +0.2
1,765,235 + IAI47_08330 0.62 +1.8
1,765,235 + IAI47_08330 0.62 +0.2
1,765,235 + IAI47_08330 0.62 +0.3
1,765,235 + IAI47_08330 0.62 -0.6
1,765,254 + IAI47_08330 0.64 +0.2
1,765,254 + IAI47_08330 0.64 -0.3
1,765,254 + IAI47_08330 0.64 +0.5
1,765,255 - IAI47_08330 0.64 +0.4
1,765,255 - IAI47_08330 0.64 -0.0
1,765,255 - IAI47_08330 0.64 -1.0
1,765,257 - IAI47_08330 0.65 -0.2
1,765,305 + IAI47_08330 0.69 +0.6
1,765,305 + IAI47_08330 0.69 -0.7
1,765,305 + IAI47_08330 0.69 +0.1
1,765,305 + IAI47_08330 0.69 -0.6
1,765,305 + IAI47_08330 0.69 +1.2
1,765,305 + IAI47_08330 0.69 -0.4
1,765,305 + IAI47_08330 0.69 -0.6
1,765,305 + IAI47_08330 0.69 -0.4
1,765,305 + IAI47_08330 0.69 -0.2
1,765,306 - IAI47_08330 0.69 -1.9
1,765,306 - IAI47_08330 0.69 +2.0
1,765,306 - IAI47_08330 0.69 +0.4
1,765,306 - IAI47_08330 0.69 +0.3
1,765,306 - IAI47_08330 0.69 -0.2
1,765,306 - IAI47_08330 0.69 -0.7
1,765,306 - IAI47_08330 0.69 +1.0
1,765,306 - IAI47_08330 0.69 -1.2
1,765,306 - IAI47_08330 0.69 +0.1
1,765,306 - IAI47_08330 0.69 +0.0
1,765,306 - IAI47_08330 0.69 -1.6
1,765,510 + IAI47_08330 0.89 +0.6
1,765,510 + IAI47_08330 0.89 -0.6
1,765,511 - IAI47_08330 0.89 +0.4
1,765,511 - IAI47_08330 0.89 -0.5
1,765,533 - +0.4
1,765,561 + -1.5
1,765,567 + -0.5
1,765,567 + +1.1
1,765,567 + -1.2
1,765,567 + -0.4
1,765,567 + +1.2
1,765,567 + +0.7
1,765,568 - -0.9
1,765,568 - -0.4
1,765,568 - -1.7

Or see this region's nucleotide sequence