Strain Fitness in Pantoea sp. MT58 around IAI47_06035

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,229,311	+		IAI47_06025	0.14	+2.1
1,229,311	+		IAI47_06025	0.14	-2.6
1,229,312	-		IAI47_06025	0.14	-0.8
1,229,315	+		IAI47_06025	0.14	-1.0
1,229,315	+		IAI47_06025	0.14	+0.2
1,229,338	+		IAI47_06025	0.17	+0.5
1,229,338	+		IAI47_06025	0.17	-1.3
1,229,338	+		IAI47_06025	0.17	+1.5
1,229,339	-		IAI47_06025	0.17	+0.9
1,229,339	-		IAI47_06025	0.17	-0.0
1,229,339	-		IAI47_06025	0.17	+0.4
1,229,339	-		IAI47_06025	0.17	-1.3
1,229,339	-		IAI47_06025	0.17	-0.7
1,229,339	-		IAI47_06025	0.17	+0.3
1,229,350	+		IAI47_06025	0.18	+0.0
1,229,350	+		IAI47_06025	0.18	-0.6
1,229,350	+		IAI47_06025	0.18	-0.0
1,229,351	-		IAI47_06025	0.18	+1.2
1,229,351	-		IAI47_06025	0.18	+1.1
1,229,351	-		IAI47_06025	0.18	-0.1
1,229,382	-		IAI47_06025	0.22	-0.0
1,229,382	-		IAI47_06025	0.22	-1.4
1,229,405	+		IAI47_06025	0.24	-0.9
1,229,405	+		IAI47_06025	0.24	-0.7
1,229,405	+		IAI47_06025	0.24	+1.4
1,229,405	+		IAI47_06025	0.24	-1.2
1,229,405	+		IAI47_06025	0.24	+2.5
1,229,414	+		IAI47_06025	0.25	+1.0
1,229,415	-		IAI47_06025	0.25	+0.5
1,229,420	-		IAI47_06025	0.26	-0.3
1,229,420	-		IAI47_06025	0.26	-1.4
1,229,467	+		IAI47_06025	0.31	-1.7
1,229,467	+		IAI47_06025	0.31	-0.8
1,229,468	-		IAI47_06025	0.31	-0.2
1,229,502	+		IAI47_06025	0.35	-0.5
1,229,502	+		IAI47_06025	0.35	-1.4
1,229,502	+		IAI47_06025	0.35	+0.2
1,229,502	+		IAI47_06025	0.35	+1.6
1,229,502	+		IAI47_06025	0.35	-1.4
1,229,502	+		IAI47_06025	0.35	+2.3
1,229,502	+		IAI47_06025	0.35	-0.3
1,229,503	-		IAI47_06025	0.35	+1.0
1,229,503	-		IAI47_06025	0.35	+1.8
1,229,503	-		IAI47_06025	0.35	+0.4
1,229,503	-		IAI47_06025	0.35	-0.7
1,229,503	-		IAI47_06025	0.35	+0.1
1,229,503	-		IAI47_06025	0.35	-0.7
1,229,503	-		IAI47_06025	0.35	-1.1
1,229,503	-		IAI47_06025	0.35	-1.3
1,229,504	+		IAI47_06025	0.35	-1.5
1,229,504	+		IAI47_06025	0.35	-0.5
1,229,504	+		IAI47_06025	0.35	-1.9
1,229,504	+		IAI47_06025	0.35	+0.3
1,229,504	+		IAI47_06025	0.35	+1.8
1,229,504	+		IAI47_06025	0.35	+0.3
1,229,504	+		IAI47_06025	0.35	-0.2
1,229,504	+		IAI47_06025	0.35	-1.5
1,229,504	+		IAI47_06025	0.35	-1.9
1,229,504	+		IAI47_06025	0.35	-3.2
1,229,504	+		IAI47_06025	0.35	-0.8
1,229,504	+		IAI47_06025	0.35	-0.1
1,229,504	+		IAI47_06025	0.35	-0.6
1,229,504	+		IAI47_06025	0.35	-0.6
1,229,504	+		IAI47_06025	0.35	-0.7
1,229,504	+		IAI47_06025	0.35	+1.5
1,229,505	-		IAI47_06025	0.35	-0.0
1,229,505	-		IAI47_06025	0.35	+0.4
1,229,505	-		IAI47_06025	0.35	-1.0
1,229,505	-		IAI47_06025	0.35	-1.7
1,229,505	-		IAI47_06025	0.35	-0.5
1,229,505	-		IAI47_06025	0.35	+0.4
1,229,505	-		IAI47_06025	0.35	+0.7
1,229,528	+		IAI47_06025	0.38	-0.5
1,229,528	+		IAI47_06025	0.38	-0.8
1,229,529	-		IAI47_06025	0.38	+1.5
1,229,529	-		IAI47_06025	0.38	-1.0
1,229,531	+		IAI47_06025	0.38	+0.5
1,229,531	+		IAI47_06025	0.38	-0.1
1,229,531	+		IAI47_06025	0.38	+0.3
1,229,531	+		IAI47_06025	0.38	-0.5
1,229,531	+		IAI47_06025	0.38	-1.4
1,229,531	+		IAI47_06025	0.38	+0.9
1,229,532	-		IAI47_06025	0.38	-0.3
1,229,532	-		IAI47_06025	0.38	-1.0
1,229,532	-		IAI47_06025	0.38	+0.6
1,229,579	+		IAI47_06025	0.43	+1.0
1,229,580	-		IAI47_06025	0.44	+1.9
1,229,591	+		IAI47_06025	0.45	-0.5
1,229,591	+		IAI47_06025	0.45	-0.6
1,229,591	+		IAI47_06025	0.45	-1.1
1,229,591	+		IAI47_06025	0.45	+1.3
1,229,592	-		IAI47_06025	0.45	+1.5
1,229,592	-		IAI47_06025	0.45	+0.7
1,229,592	-		IAI47_06025	0.45	-1.0
1,229,592	-		IAI47_06025	0.45	+1.2
1,229,592	-		IAI47_06025	0.45	-0.1
1,229,592	-		IAI47_06025	0.45	-0.9
1,229,628	+		IAI47_06025	0.49	+0.5
1,229,629	-		IAI47_06025	0.49	+0.1
1,229,629	-		IAI47_06025	0.49	+0.8
1,229,633	+		IAI47_06025	0.49	-0.9
1,229,633	+		IAI47_06025	0.49	-2.6
1,229,633	+		IAI47_06025	0.49	+0.5
1,229,633	+		IAI47_06025	0.49	+3.1
1,229,633	+		IAI47_06025	0.49	-0.2
1,229,633	+		IAI47_06025	0.49	+0.4
1,229,633	+		IAI47_06025	0.49	-0.2
1,229,633	+		IAI47_06025	0.49	+1.3
1,229,633	+		IAI47_06025	0.49	+0.1
1,229,633	+		IAI47_06025	0.49	+0.8
1,229,633	+		IAI47_06025	0.49	-0.9
1,229,633	+		IAI47_06025	0.49	-1.7
1,229,634	-		IAI47_06025	0.50	-1.6
1,229,634	-		IAI47_06025	0.50	+0.9
1,229,634	-		IAI47_06025	0.50	+0.4
1,229,634	-		IAI47_06025	0.50	-1.9
1,229,634	-		IAI47_06025	0.50	+0.1
1,229,634	-		IAI47_06025	0.50	-1.0
1,229,640	+		IAI47_06025	0.50	-0.5
1,229,640	+		IAI47_06025	0.50	+0.5
1,229,640	+		IAI47_06025	0.50	+0.8
1,229,640	+		IAI47_06025	0.50	-0.4
1,229,640	+		IAI47_06025	0.50	-0.7
1,229,641	-		IAI47_06025	0.50	+2.0
1,229,641	-		IAI47_06025	0.50	-0.0
1,229,641	-		IAI47_06025	0.50	+0.1
1,229,641	-		IAI47_06025	0.50	-2.1
1,229,644	+		IAI47_06025	0.51	-2.4
1,229,644	+		IAI47_06025	0.51	-2.3
1,229,645	-		IAI47_06025	0.51	+0.3
1,229,645	-		IAI47_06025	0.51	+0.3
1,229,645	-		IAI47_06025	0.51	+1.5
1,229,645	-		IAI47_06025	0.51	-0.7
1,229,664	+		IAI47_06025	0.53	-0.3
1,229,664	+		IAI47_06025	0.53	-0.0
1,229,664	+		IAI47_06025	0.53	+1.3
1,229,664	+		IAI47_06025	0.53	+1.4
1,229,664	+		IAI47_06025	0.53	+0.8
1,229,665	-		IAI47_06025	0.53	-0.2
1,229,665	-		IAI47_06025	0.53	-0.5
1,229,665	-		IAI47_06025	0.53	-0.5
1,229,665	-		IAI47_06025	0.53	+1.5
1,229,732	+		IAI47_06025	0.60	+0.9
1,229,733	-		IAI47_06025	0.60	+1.0
1,229,744	+		IAI47_06025	0.62	+0.1
1,229,744	+		IAI47_06025	0.62	-1.7
1,229,745	-		IAI47_06025	0.62	+0.2
1,229,745	-		IAI47_06025	0.62	+2.5
1,229,745	-		IAI47_06025	0.62	+1.9
1,229,745	-		IAI47_06025	0.62	+0.8
1,229,745	-		IAI47_06025	0.62	-0.8
1,229,746	+		IAI47_06025	0.62	+0.7
1,229,746	+		IAI47_06025	0.62	-2.4
1,229,747	-		IAI47_06025	0.62	-2.4
1,229,798	+		IAI47_06025	0.68	+0.6
1,229,798	+		IAI47_06025	0.68	-1.4
1,229,798	+		IAI47_06025	0.68	+0.4
1,229,799	-		IAI47_06025	0.68	-0.3
1,229,799	-		IAI47_06025	0.68	-0.6
1,229,813	+		IAI47_06025	0.69	-0.5
1,229,821	+		IAI47_06025	0.70	-0.6
1,229,821	+		IAI47_06025	0.70	+3.2
1,229,821	+		IAI47_06025	0.70	+1.0
1,229,843	+		IAI47_06025	0.72	-0.5
1,229,844	-		IAI47_06025	0.73	-0.2
1,229,844	-		IAI47_06025	0.73	+1.1
1,229,872	+		IAI47_06025	0.76	+0.5
1,229,873	-		IAI47_06025	0.76	-0.4
1,229,873	-		IAI47_06025	0.76	-0.1
1,229,893	+		IAI47_06025	0.78	+2.5
1,229,893	+		IAI47_06025	0.78	+1.5
1,229,904	-		IAI47_06025	0.79	+0.6
1,229,904	-		IAI47_06025	0.79	-0.4
1,229,904	-		IAI47_06025	0.79	+0.7
1,229,905	+		IAI47_06025	0.79	+0.2
1,229,905	+		IAI47_06025	0.79	-1.7
1,229,906	-		IAI47_06025	0.79	+1.2
1,230,039	+				+2.2
1,230,039	+				-0.6
1,230,040	-				-0.6
1,230,041	+				+1.7
1,230,042	-				-0.9
1,230,042	-				-0.3
1,230,067	+				+0.7
1,230,068	-				+0.8
1,230,071	+				+0.5
1,230,071	+				-0.3
1,230,072	-				+3.3
1,230,084	+				+0.4
1,230,084	+				-0.4
1,230,085	-				+0.1
1,230,085	-				+0.2
1,230,085	-				+0.5
1,230,085	-				+1.5
1,230,090	+				-0.3
1,230,099	+				+1.1
1,230,128	-		IAI47_06030	0.18	-0.3
1,230,132	+		IAI47_06030	0.21	+0.6
1,230,132	+		IAI47_06030	0.21	-0.3
1,230,136	-		IAI47_06030	0.23	-1.4
1,230,136	-		IAI47_06030	0.23	-0.2
1,230,139	+		IAI47_06030	0.24	-0.5
1,230,139	+		IAI47_06030	0.24	+1.4
1,230,139	+		IAI47_06030	0.24	+0.5
1,230,178	+		IAI47_06030	0.44	-0.7
1,230,184	-		IAI47_06030	0.47	+2.2
1,230,184	-		IAI47_06030	0.47	+0.4
1,230,193	+		IAI47_06030	0.52	+0.3
1,230,194	-		IAI47_06030	0.52	+1.2
1,230,194	-		IAI47_06030	0.52	+0.8
1,230,196	+		IAI47_06030	0.53	+1.1
1,230,197	-		IAI47_06030	0.54	-0.4
1,230,248	-		IAI47_06030	0.80	+0.5
1,230,285	-				-0.3
1,230,315	+				+0.3
1,230,315	+				-1.9
1,230,388	+				-1.9
1,230,389	-				-2.1
1,230,392	-				-0.9
1,230,405	+		IAI47_06035	0.10	-2.6
1,230,415	-		IAI47_06035	0.11	-1.4
1,230,419	-		IAI47_06035	0.12	+0.1
1,230,423	+		IAI47_06035	0.12	+0.4
1,230,424	-		IAI47_06035	0.12	-1.0
1,230,424	-		IAI47_06035	0.12	-0.5
1,230,426	-		IAI47_06035	0.12	-0.8
1,230,438	+		IAI47_06035	0.13	-3.4
1,230,439	-		IAI47_06035	0.13	-0.7
1,230,461	+		IAI47_06035	0.15	-1.2
1,230,473	+		IAI47_06035	0.16	-0.7
1,230,478	-		IAI47_06035	0.17	-1.8
1,230,478	-		IAI47_06035	0.17	-1.2
1,230,501	+		IAI47_06035	0.19	+0.2
1,230,502	-		IAI47_06035	0.19	+0.4
1,230,502	-		IAI47_06035	0.19	-1.8
1,230,503	+		IAI47_06035	0.19	-1.8
1,230,503	+		IAI47_06035	0.19	-1.7
1,230,528	+		IAI47_06035	0.21	+0.1
1,230,545	-		IAI47_06035	0.23	-1.3
1,230,561	+		IAI47_06035	0.24	-1.0
1,230,561	+		IAI47_06035	0.24	-2.5
1,230,562	-		IAI47_06035	0.24	-1.8
1,230,562	-		IAI47_06035	0.24	+1.1
1,230,562	-		IAI47_06035	0.24	+0.3
1,230,573	+		IAI47_06035	0.25	-1.1
1,230,573	+		IAI47_06035	0.25	-0.6
1,230,574	-		IAI47_06035	0.25	-0.5
1,230,574	-		IAI47_06035	0.25	-2.0
1,230,587	+		IAI47_06035	0.26	-0.5
1,230,641	+		IAI47_06035	0.31	-0.5
1,230,641	+		IAI47_06035	0.31	-1.2
1,230,641	+		IAI47_06035	0.31	-1.2
1,230,641	+		IAI47_06035	0.31	+0.9
1,230,642	-		IAI47_06035	0.31	+0.1
1,230,642	-		IAI47_06035	0.31	-0.2
1,230,642	-		IAI47_06035	0.31	-0.5
1,230,642	-		IAI47_06035	0.31	-1.5
1,230,642	-		IAI47_06035	0.31	-2.2
1,230,703	-		IAI47_06035	0.37	-1.4
1,230,712	+		IAI47_06035	0.37	-0.6
1,230,713	-		IAI47_06035	0.38	-1.3
1,230,713	-		IAI47_06035	0.38	-1.0
1,230,716	+		IAI47_06035	0.38	-1.2
1,230,716	+		IAI47_06035	0.38	+0.1
1,230,716	+		IAI47_06035	0.38	+2.8
1,230,716	+		IAI47_06035	0.38	+0.0
1,230,716	+		IAI47_06035	0.38	+1.1
1,230,717	-		IAI47_06035	0.38	+0.7
1,230,717	-		IAI47_06035	0.38	-1.2
1,230,717	-		IAI47_06035	0.38	-0.3
1,230,717	-		IAI47_06035	0.38	-0.5
1,230,722	+		IAI47_06035	0.38	-1.9
1,230,741	+		IAI47_06035	0.40	-0.8
1,230,742	-		IAI47_06035	0.40	-1.3
1,230,768	-		IAI47_06035	0.42	-1.7
1,230,768	-		IAI47_06035	0.42	-0.3
1,230,768	-		IAI47_06035	0.42	-0.2
1,230,769	+		IAI47_06035	0.43	-1.4
1,230,769	+		IAI47_06035	0.43	-1.5
1,230,769	+		IAI47_06035	0.43	-0.4
1,230,770	-		IAI47_06035	0.43	+0.3
1,230,770	-		IAI47_06035	0.43	-0.2
1,230,770	-		IAI47_06035	0.43	-1.0
1,230,781	+		IAI47_06035	0.44	-0.3
1,230,782	-		IAI47_06035	0.44	-0.2
1,230,799	+		IAI47_06035	0.45	-1.7
1,230,800	-		IAI47_06035	0.45	+0.1
1,230,800	-		IAI47_06035	0.45	-0.8
1,230,842	+		IAI47_06035	0.49	+0.0
1,230,843	-		IAI47_06035	0.49	+0.3
1,230,852	-		IAI47_06035	0.50	-2.9
1,230,864	-		IAI47_06035	0.51	-0.2
1,230,864	-		IAI47_06035	0.51	-0.8
1,230,911	+		IAI47_06035	0.55	-0.2
1,230,949	-		IAI47_06035	0.58	+0.4
1,231,013	+		IAI47_06035	0.64	-1.2
1,231,014	-		IAI47_06035	0.64	-2.2
1,231,023	+		IAI47_06035	0.65	-0.4
1,231,024	-		IAI47_06035	0.65	-1.9
1,231,024	-		IAI47_06035	0.65	+0.1
1,231,024	-		IAI47_06035	0.65	-1.9
1,231,032	+		IAI47_06035	0.66	-0.6
1,231,033	-		IAI47_06035	0.66	-0.3
1,231,079	+		IAI47_06035	0.70	-1.6
1,231,080	-		IAI47_06035	0.70	+2.4
1,231,083	-		IAI47_06035	0.70	-1.2
1,231,094	+		IAI47_06035	0.71	-0.5
1,231,106	-		IAI47_06035	0.72	-0.7
1,231,193	-		IAI47_06035	0.80	-0.4
1,231,199	-		IAI47_06035	0.80	-2.2
1,231,259	+		IAI47_06035	0.86	-2.6
1,231,259	+		IAI47_06035	0.86	-0.9
1,231,259	+		IAI47_06035	0.86	-0.9
1,231,259	+		IAI47_06035	0.86	-1.2
1,231,259	+		IAI47_06035	0.86	-0.1
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