Strain Fitness in Pantoea sp. MT58 around IAI47_05720

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,192,693	+		IAI47_05705	0.28	+0.1
1,192,693	+		IAI47_05705	0.28	-1.3
1,192,694	-		IAI47_05705	0.28	-0.5
1,192,694	-		IAI47_05705	0.28	+1.1
1,192,718	-		IAI47_05705	0.38	+0.3
1,192,778	+		IAI47_05705	0.63	-1.6
1,192,779	-		IAI47_05705	0.63	-0.8
1,192,779	-		IAI47_05705	0.63	+0.7
1,192,779	-		IAI47_05705	0.63	-0.3
1,192,779	-		IAI47_05705	0.63	-0.2
1,192,789	+		IAI47_05705	0.67	+0.3
1,192,789	+		IAI47_05705	0.67	-1.6
1,192,789	+		IAI47_05705	0.67	+1.4
1,192,790	-		IAI47_05705	0.67	+1.0
1,192,790	-		IAI47_05705	0.67	-0.6
1,192,810	-		IAI47_05705	0.76	+0.1
1,192,821	-		IAI47_05705	0.80	-1.9
1,192,854	+				-1.4
1,192,855	-				-1.4
1,192,855	-				+1.1
1,192,868	+				+0.1
1,192,868	+				+0.2
1,192,868	+				-0.8
1,192,868	+				+0.8
1,192,868	+				+0.0
1,192,868	+				+0.2
1,192,868	+				+0.1
1,192,869	-				+0.3
1,192,869	-				+0.1
1,192,872	+				-2.0
1,192,891	+				-2.5
1,192,891	+				+0.2
1,192,891	+				-1.3
1,192,891	+				-0.0
1,192,892	-				-1.0
1,192,892	-				+0.1
1,192,892	-				+3.5
1,192,892	-				-2.1
1,192,892	-				-0.2
1,192,894	-				+0.1
1,192,894	-				-0.2
1,192,894	-				+0.1
1,192,901	-				+1.7
1,192,926	+		IAI47_05710	0.11	-0.6
1,192,926	+		IAI47_05710	0.11	+0.4
1,192,926	+		IAI47_05710	0.11	+0.1
1,192,927	-		IAI47_05710	0.11	+0.2
1,192,941	+		IAI47_05710	0.17	+0.7
1,192,941	+		IAI47_05710	0.17	-0.1
1,192,966	+		IAI47_05710	0.27	-1.7
1,192,966	+		IAI47_05710	0.27	+0.3
1,192,967	-		IAI47_05710	0.28	+1.1
1,192,967	-		IAI47_05710	0.28	-0.6
1,193,014	+		IAI47_05710	0.47	+1.7
1,193,039	+		IAI47_05710	0.57	+0.1
1,193,040	-		IAI47_05710	0.57	-0.3
1,193,053	-		IAI47_05710	0.63	-0.0
1,193,053	-		IAI47_05710	0.63	+0.3
1,193,053	-		IAI47_05710	0.63	+0.5
1,193,102	+		IAI47_05710	0.83	-1.8
1,193,138	+				-1.0
1,193,139	-				+1.5
1,193,139	-				+1.3
1,193,139	-				+0.1
1,193,157	+				+2.5
1,193,157	+				-0.2
1,193,182	+		IAI47_05715	0.12	+1.0
1,193,199	+		IAI47_05715	0.17	+0.4
1,193,199	+		IAI47_05715	0.17	-1.2
1,193,199	+		IAI47_05715	0.17	-1.5
1,193,199	+		IAI47_05715	0.17	-0.0
1,193,200	-		IAI47_05715	0.18	-0.5
1,193,200	-		IAI47_05715	0.18	+1.4
1,193,225	+		IAI47_05715	0.25	+0.8
1,193,225	+		IAI47_05715	0.25	-1.3
1,193,225	+		IAI47_05715	0.25	+0.7
1,193,226	-		IAI47_05715	0.26	+3.1
1,193,252	+		IAI47_05715	0.33	+1.7
1,193,252	+		IAI47_05715	0.33	+1.2
1,193,253	-		IAI47_05715	0.34	+0.4
1,193,253	-		IAI47_05715	0.34	-0.0
1,193,253	-		IAI47_05715	0.34	-0.6
1,193,253	-		IAI47_05715	0.34	-0.5
1,193,253	-		IAI47_05715	0.34	-0.3
1,193,268	+		IAI47_05715	0.38	-0.2
1,193,295	+		IAI47_05715	0.46	-1.5
1,193,296	-		IAI47_05715	0.47	-0.6
1,193,310	+		IAI47_05715	0.51	-0.5
1,193,310	+		IAI47_05715	0.51	+0.6
1,193,310	+		IAI47_05715	0.51	-0.2
1,193,310	+		IAI47_05715	0.51	+0.2
1,193,310	+		IAI47_05715	0.51	-0.4
1,193,311	-		IAI47_05715	0.51	-3.0
1,193,311	-		IAI47_05715	0.51	+0.8
1,193,311	-		IAI47_05715	0.51	+0.3
1,193,311	-		IAI47_05715	0.51	+0.2
1,193,311	-		IAI47_05715	0.51	+1.1
1,193,311	-		IAI47_05715	0.51	+1.0
1,193,311	-		IAI47_05715	0.51	+2.0
1,193,311	-		IAI47_05715	0.51	-0.3
1,193,333	-		IAI47_05715	0.58	-1.4
1,193,373	-		IAI47_05715	0.70	-0.1
1,193,398	+		IAI47_05715	0.77	-0.3
1,193,399	-		IAI47_05715	0.77	+1.7
1,193,399	-		IAI47_05715	0.77	-1.6
1,193,399	-		IAI47_05715	0.77	-0.4
1,193,399	-		IAI47_05715	0.77	+0.8
1,193,399	-		IAI47_05715	0.77	-0.6
1,193,399	-		IAI47_05715	0.77	-1.9
1,193,400	+		IAI47_05715	0.78	+1.2
1,193,400	+		IAI47_05715	0.78	-0.2
1,193,400	+		IAI47_05715	0.78	-1.2
1,193,400	+		IAI47_05715	0.78	+0.3
1,193,400	+		IAI47_05715	0.78	-2.1
1,193,400	+		IAI47_05715	0.78	+1.3
1,193,401	-		IAI47_05715	0.78	+1.4
1,193,401	-		IAI47_05715	0.78	-0.7
1,193,401	-		IAI47_05715	0.78	+0.0
1,193,415	+		IAI47_05715	0.82	+1.4
1,193,415	+		IAI47_05715	0.82	-2.5
1,193,415	+		IAI47_05715	0.82	+0.9
1,193,415	+		IAI47_05715	0.82	-1.0
1,193,415	+		IAI47_05715	0.82	+0.7
1,193,415	+		IAI47_05715	0.82	-0.4
1,193,415	+		IAI47_05715	0.82	+0.0
1,193,416	-		IAI47_05715	0.83	+0.6
1,193,416	-		IAI47_05715	0.83	+0.7
1,193,416	-		IAI47_05715	0.83	+0.1
1,193,416	-		IAI47_05715	0.83	+0.4
1,193,416	-		IAI47_05715	0.83	-1.2
1,193,416	-		IAI47_05715	0.83	-0.3
1,193,419	+		IAI47_05715	0.83	-1.8
1,193,419	+		IAI47_05715	0.83	+1.7
1,193,419	+		IAI47_05715	0.83	+1.4
1,193,420	-		IAI47_05715	0.84	-0.7
1,193,420	-		IAI47_05715	0.84	-0.3
1,193,423	+		IAI47_05715	0.85	+0.2
1,193,424	-		IAI47_05715	0.85	+0.3
1,193,541	+				-1.3
1,193,542	-				+0.2
1,193,567	+				-2.7
1,193,567	+				+0.8
1,193,567	+				+0.5
1,193,567	+				+1.0
1,193,567	+				-0.3
1,193,567	+				+1.1
1,193,567	+				+0.2
1,193,567	+				-0.7
1,193,567	+				-2.3
1,193,568	-				-0.3
1,193,568	-				-0.0
1,193,568	-				+0.9
1,193,568	-				-1.2
1,193,568	-				+0.0
1,193,568	-				+0.5
1,193,568	-				-0.6
1,193,595	-				+0.7
1,193,607	+				-0.9
1,193,654	-				+0.9
1,193,654	-				-3.8
1,193,654	-				+1.0
1,193,687	+				-1.2
1,193,687	+				-0.3
1,193,687	+				+0.7
1,193,688	-				-0.9
1,193,691	+				+3.7
1,193,692	-				+0.5
1,193,736	+		IAI47_05720	0.15	+0.3
1,193,768	-		IAI47_05720	0.25	+0.9
1,193,790	+		IAI47_05720	0.32	+0.8
1,193,790	+		IAI47_05720	0.32	+1.7
1,193,791	-		IAI47_05720	0.33	+2.7
1,193,791	-		IAI47_05720	0.33	-1.7
1,193,811	+		IAI47_05720	0.39	+0.3
1,193,811	+		IAI47_05720	0.39	+0.7
1,193,811	+		IAI47_05720	0.39	-0.7
1,193,811	+		IAI47_05720	0.39	+1.5
1,193,811	+		IAI47_05720	0.39	-1.9
1,193,811	+		IAI47_05720	0.39	+1.9
1,193,811	+		IAI47_05720	0.39	-1.4
1,193,812	-		IAI47_05720	0.39	-0.4
1,193,812	-		IAI47_05720	0.39	-0.3
1,193,812	-		IAI47_05720	0.39	+0.5
1,193,812	-		IAI47_05720	0.39	+0.5
1,193,849	+		IAI47_05720	0.51	-2.4
1,193,850	-		IAI47_05720	0.52	-1.0
1,193,889	+		IAI47_05720	0.64	+1.1
1,193,923	+		IAI47_05720	0.75	+0.4
1,193,923	+		IAI47_05720	0.75	+0.9
1,193,924	-		IAI47_05720	0.76	+0.6
1,193,924	-		IAI47_05720	0.76	+0.8
1,193,924	-		IAI47_05720	0.76	+2.1
1,194,010	+				-0.6
1,194,011	-				-2.2
1,194,016	+				+0.4
1,194,016	+				-0.5
1,194,016	+				-0.5
1,194,016	+				+2.0
1,194,016	+				+0.2
1,194,017	-				-0.3
1,194,017	-				+0.9
1,194,017	-				-1.3
1,194,023	+				+1.1
1,194,023	+				+0.5
1,194,023	+				+1.5
1,194,023	+				-0.0
1,194,024	-				+0.7
1,194,024	-				+3.1
1,194,059	+				+0.4
1,194,059	+				-2.3
1,194,059	+				+0.5
1,194,060	-				-0.6
1,194,224	+		IAI47_05725	0.34	+0.2
1,194,224	+		IAI47_05725	0.34	-1.3
1,194,224	+		IAI47_05725	0.34	+0.5
1,194,225	-		IAI47_05725	0.34	+1.8
1,194,268	+		IAI47_05725	0.41	+2.0
1,194,304	+		IAI47_05725	0.47	-0.2
1,194,304	+		IAI47_05725	0.47	+0.2
1,194,304	+		IAI47_05725	0.47	+1.1
1,194,378	+		IAI47_05725	0.60	-0.4
1,194,378	+		IAI47_05725	0.60	-0.3
1,194,378	+		IAI47_05725	0.60	+0.0
1,194,378	+		IAI47_05725	0.60	+0.9
1,194,379	-		IAI47_05725	0.60	-0.6
1,194,393	+		IAI47_05725	0.62	-0.7
1,194,394	-		IAI47_05725	0.63	-1.0
1,194,394	-		IAI47_05725	0.63	+0.5
1,194,394	-		IAI47_05725	0.63	+0.5
1,194,394	-		IAI47_05725	0.63	-0.5
1,194,422	+		IAI47_05725	0.67	-0.1
1,194,422	+		IAI47_05725	0.67	-0.3
1,194,422	+		IAI47_05725	0.67	-0.1
1,194,422	+		IAI47_05725	0.67	-0.9
1,194,423	-		IAI47_05725	0.68	-0.7
1,194,434	+		IAI47_05725	0.69	+0.3
1,194,434	+		IAI47_05725	0.69	-1.3
1,194,435	-		IAI47_05725	0.70	+2.8
1,194,435	-		IAI47_05725	0.70	+0.1
1,194,435	-		IAI47_05725	0.70	-0.0
1,194,519	+		IAI47_05725	0.84	-0.9
1,194,519	+		IAI47_05725	0.84	-1.3
1,194,519	+		IAI47_05725	0.84	+0.3
1,194,519	+		IAI47_05725	0.84	+1.5
1,194,520	-		IAI47_05725	0.84	+2.0
1,194,520	-		IAI47_05725	0.84	+1.4
1,194,520	-		IAI47_05725	0.84	-1.8
1,194,520	-		IAI47_05725	0.84	-0.3
1,194,533	+		IAI47_05725	0.86	+0.4
1,194,533	+		IAI47_05725	0.86	-0.4
1,194,533	+		IAI47_05725	0.86	-0.3
1,194,534	-		IAI47_05725	0.86	-0.5
1,194,534	-		IAI47_05725	0.86	-2.2
1,194,534	-		IAI47_05725	0.86	-0.3
1,194,534	-		IAI47_05725	0.86	-1.3
1,194,593	+				-0.2
1,194,593	+				+1.0
1,194,593	+				-1.4
1,194,593	+				+1.8
1,194,594	-				+1.1
1,194,594	-				+0.0
1,194,594	-				-1.3
1,194,594	-				-0.8
1,194,594	-				+1.1
1,194,603	+				+0.1
1,194,604	-				-0.3
1,194,604	-				+0.2
1,194,609	+				+1.4
1,194,609	+				-1.0
1,194,609	+				+0.5
1,194,609	+				+1.3
1,194,609	+				-2.3
1,194,609	+				-1.2
1,194,610	-				+0.5
1,194,610	-				-0.7
1,194,610	-				-2.2
1,194,610	-				-0.6
1,194,610	-				-1.1
1,194,658	+				+1.4
1,194,659	-				+0.5
1,194,659	-				+1.0
1,194,741	-		IAI47_05730	0.19	-1.5
1,194,752	+		IAI47_05730	0.21	-2.2
1,194,753	-		IAI47_05730	0.21	-1.8
1,194,762	-		IAI47_05730	0.22	-0.3
1,194,907	+		IAI47_05730	0.43	-0.5
1,194,907	+		IAI47_05730	0.43	-1.8
1,194,907	+		IAI47_05730	0.43	-0.5
1,194,907	+		IAI47_05730	0.43	+0.5
1,194,984	-		IAI47_05730	0.55	-0.6