Strain Fitness in Pantoea sp. MT58 around IAI47_15020

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,165,991	+		IAI47_15010	0.45	+0.7
3,165,991	+		IAI47_15010	0.45	+1.6
3,165,992	-		IAI47_15010	0.45	+0.2
3,165,992	-		IAI47_15010	0.45	+1.0
3,165,992	-		IAI47_15010	0.45	+3.1
3,166,012	+		IAI47_15010	0.54	+1.3
3,166,012	+		IAI47_15010	0.54	+0.8
3,166,013	-		IAI47_15010	0.54	+0.8
3,166,013	-		IAI47_15010	0.54	-0.5
3,166,013	-		IAI47_15010	0.54	-0.1
3,166,015	+		IAI47_15010	0.55	-1.0
3,166,016	-		IAI47_15010	0.56	+0.9
3,166,061	-		IAI47_15010	0.75	+1.7
3,166,089	+		IAI47_15010	0.87	-0.0
3,166,122	-				+0.2
3,166,122	-				+0.9
3,166,130	+				-0.3
3,166,289	+				-0.0
3,166,290	-				+0.9
3,166,290	-				-0.3
3,166,314	+				-0.4
3,166,368	-				+0.7
3,166,402	+				+0.1
3,166,402	+				-0.3
3,166,419	+				+0.0
3,166,419	+				+0.9
3,166,420	-				-0.3
3,166,424	+				-0.1
3,166,424	+				+1.0
3,166,424	+				-0.1
3,166,424	+				+0.9
3,166,424	+				-0.1
3,166,424	+				+3.2
3,166,424	+				+1.1
3,166,425	-				-0.6
3,166,425	-				+0.5
3,166,425	-				+0.7
3,166,478	+				+1.1
3,166,479	-				-0.1
3,166,488	+				+0.7
3,166,536	+		IAI47_15015	0.17	+0.8
3,166,537	-		IAI47_15015	0.17	+0.4
3,166,542	+		IAI47_15015	0.19	+0.8
3,166,542	+		IAI47_15015	0.19	-0.0
3,166,542	+		IAI47_15015	0.19	-0.2
3,166,656	+		IAI47_15015	0.45	-0.3
3,166,656	+		IAI47_15015	0.45	-0.4
3,166,656	+		IAI47_15015	0.45	-0.4
3,166,656	+		IAI47_15015	0.45	+1.3
3,166,657	-				+0.3
3,166,711	-		IAI47_15015	0.58	-0.3
3,166,711	-		IAI47_15015	0.58	-0.7
3,166,711	-		IAI47_15015	0.58	+1.4
3,166,783	-		IAI47_15015	0.75	-0.6
3,166,783	-		IAI47_15015	0.75	+0.6
3,166,785	+		IAI47_15015	0.75	+1.9
3,166,785	+		IAI47_15015	0.75	-0.6
3,166,785	+		IAI47_15015	0.75	+3.9
3,166,785	+		IAI47_15015	0.75	+1.5
3,166,785	+		IAI47_15015	0.75	-0.0
3,166,785	+		IAI47_15015	0.75	-0.5
3,166,785	+		IAI47_15015	0.75	+0.5
3,166,786	-		IAI47_15015	0.76	+0.4
3,166,793	+		IAI47_15015	0.77	-1.9
3,166,793	+		IAI47_15015	0.77	+0.3
3,166,794	-		IAI47_15015	0.77	+0.6
3,166,794	-		IAI47_15015	0.77	-0.4
3,166,794	-		IAI47_15015	0.77	-0.4
3,166,794	-		IAI47_15015	0.77	+1.1
3,166,839	+		IAI47_15015	0.88	+0.1
3,166,840	-		IAI47_15015	0.88	+0.1
3,166,840	-		IAI47_15015	0.88	-0.6
3,166,840	-		IAI47_15015	0.88	-0.7
3,166,908	+				-1.5
3,166,908	+				+0.6
3,166,908	+				-0.3
3,166,909	-				+0.4
3,166,917	+				+0.2
3,166,917	+				+0.7
3,166,917	+				+0.0
3,166,917	+				-0.5
3,166,917	+				+0.6
3,166,917	+				-0.4
3,166,917	+				-0.3
3,166,918	-				-1.0
3,166,918	-				+0.4
3,166,918	-				-0.7
3,166,921	+				-0.2
3,166,921	+				+0.5
3,166,921	+				-0.1
3,166,921	+				-0.2
3,166,922	-				+0.7
3,166,922	-				+0.9
3,166,922	-				-0.3
3,166,922	-				+0.4
3,166,922	-				+1.7
3,166,923	+				+1.3
3,166,923	+				-0.3
3,166,923	+				+1.3
3,166,930	+				-2.7
3,166,930	+				-1.9
3,166,930	+				+0.8
3,166,930	+				+1.0
3,166,930	+				-0.0
3,166,930	+				+0.9
3,166,930	+				-0.7
3,166,930	+				-1.4
3,166,931	-				-0.2
3,166,931	-				-1.2
3,166,931	-				-2.1
3,166,931	-				-0.3
3,166,931	-				-1.6
3,166,931	-				+0.3
3,166,931	-				-0.2
3,166,931	-				-1.3
3,166,931	-				+0.2
3,166,931	-				+1.0
3,167,034	+				+1.5
3,167,136	-		IAI47_15020	0.16	+1.5
3,167,136	-		IAI47_15020	0.16	+1.3
3,167,136	-		IAI47_15020	0.16	+1.1
3,167,139	+		IAI47_15020	0.16	-1.7
3,167,139	+		IAI47_15020	0.16	+0.6
3,167,140	-		IAI47_15020	0.16	-0.0
3,167,140	-		IAI47_15020	0.16	+0.2
3,167,140	-		IAI47_15020	0.16	-0.1
3,167,140	-		IAI47_15020	0.16	-0.1
3,167,379	+		IAI47_15020	0.36	-1.6
3,167,379	+		IAI47_15020	0.36	-0.2
3,167,380	-		IAI47_15020	0.36	+1.9
3,167,380	-		IAI47_15020	0.36	+0.6
3,167,380	-		IAI47_15020	0.36	-0.3
3,167,475	+		IAI47_15020	0.44	+1.3
3,167,475	+		IAI47_15020	0.44	-1.8
3,167,475	+		IAI47_15020	0.44	+0.6
3,167,475	+		IAI47_15020	0.44	-1.5
3,167,476	-		IAI47_15020	0.44	+0.7
3,167,476	-		IAI47_15020	0.44	-1.1
3,167,477	+		IAI47_15020	0.45	+1.1
3,167,477	+		IAI47_15020	0.45	+2.1
3,167,477	+		IAI47_15020	0.45	-0.2
3,167,477	+		IAI47_15020	0.45	+0.6
3,167,477	+		IAI47_15020	0.45	-1.8
3,167,477	+		IAI47_15020	0.45	+0.2
3,167,477	+		IAI47_15020	0.45	-1.9
3,167,478	-		IAI47_15020	0.45	-1.6
3,167,478	-		IAI47_15020	0.45	-0.6
3,167,478	-		IAI47_15020	0.45	+1.7
3,167,507	+		IAI47_15020	0.47	-0.3
3,167,507	+		IAI47_15020	0.47	-1.0
3,167,517	+		IAI47_15020	0.48	+1.3
3,167,517	+		IAI47_15020	0.48	-1.9
3,167,517	+		IAI47_15020	0.48	+0.1
3,167,517	+		IAI47_15020	0.48	-0.2
3,167,518	-		IAI47_15020	0.48	+2.2
3,167,665	-		IAI47_15020	0.60	-1.9
3,167,665	-		IAI47_15020	0.60	+0.1
3,167,673	+		IAI47_15020	0.61	+1.3
3,167,674	-		IAI47_15020	0.61	-1.2
3,167,750	+		IAI47_15020	0.68	+1.2
3,167,750	+		IAI47_15020	0.68	-1.2
3,167,750	+		IAI47_15020	0.68	-0.8
3,167,750	+		IAI47_15020	0.68	-0.5
3,167,750	+		IAI47_15020	0.68	-0.0
3,167,750	+		IAI47_15020	0.68	-0.0
3,167,750	+		IAI47_15020	0.68	+0.6
3,167,751	-		IAI47_15020	0.68	+0.7
3,167,751	-		IAI47_15020	0.68	-1.7
3,167,827	-		IAI47_15020	0.74	-0.0
3,167,827	-		IAI47_15020	0.74	-1.2
3,167,866	+		IAI47_15020	0.77	+0.6
3,167,866	+		IAI47_15020	0.77	+1.2
3,167,866	+		IAI47_15020	0.77	-0.7
3,167,866	+		IAI47_15020	0.77	-1.2
3,167,867	-		IAI47_15020	0.77	+1.4
3,167,867	-		IAI47_15020	0.77	-1.9
3,167,867	-		IAI47_15020	0.77	+0.4
3,167,885	+		IAI47_15020	0.79	+0.0
3,167,885	+		IAI47_15020	0.79	-0.0
3,167,885	+		IAI47_15020	0.79	-0.3
3,167,885	+		IAI47_15020	0.79	-1.0
3,167,885	+		IAI47_15020	0.79	+0.3
3,167,885	+		IAI47_15020	0.79	-0.0
3,167,885	+		IAI47_15020	0.79	+1.0
3,167,885	+		IAI47_15020	0.79	-1.9
3,167,885	+		IAI47_15020	0.79	-0.3
3,167,885	+		IAI47_15020	0.79	-0.2
3,167,885	+		IAI47_15020	0.79	+0.7
3,167,885	+		IAI47_15020	0.79	-1.3
3,167,886	-		IAI47_15020	0.79	-0.6
3,167,886	-		IAI47_15020	0.79	-0.1
3,167,886	-		IAI47_15020	0.79	-0.4
3,167,886	-		IAI47_15020	0.79	+1.3
3,167,886	-		IAI47_15020	0.79	+0.6
3,167,886	-		IAI47_15020	0.79	+1.0
3,167,886	-		IAI47_15020	0.79	-0.3
3,167,886	-		IAI47_15020	0.79	+0.4
3,167,886	-		IAI47_15020	0.79	-1.2
3,167,886	-		IAI47_15020	0.79	-0.5
3,167,886	-		IAI47_15020	0.79	-0.0
3,167,886	-		IAI47_15020	0.79	+1.9
3,167,886	-		IAI47_15020	0.79	+1.2
3,167,886	-		IAI47_15020	0.79	+0.7
3,167,886	-		IAI47_15020	0.79	-0.2
3,167,886	-		IAI47_15020	0.79	+0.4
3,167,886	-		IAI47_15020	0.79	-1.6
3,167,886	-		IAI47_15020	0.79	+0.6
3,167,886	-		IAI47_15020	0.79	+0.0
3,167,941	-		IAI47_15020	0.84	-0.0
3,167,941	-		IAI47_15020	0.84	+0.1
3,167,941	-		IAI47_15020	0.84	-0.2
3,167,941	-		IAI47_15020	0.84	-0.2
3,167,944	+		IAI47_15020	0.84	+0.1
3,167,944	+		IAI47_15020	0.84	-0.4
3,167,944	+		IAI47_15020	0.84	-0.1
3,167,944	+		IAI47_15020	0.84	-0.4
3,167,944	+		IAI47_15020	0.84	-0.0
3,167,945	-		IAI47_15020	0.84	-0.4
3,167,945	-		IAI47_15020	0.84	-0.5
3,167,945	-		IAI47_15020	0.84	+0.3
3,167,945	-		IAI47_15020	0.84	-1.7
3,167,945	-		IAI47_15020	0.84	-0.2
3,167,945	-		IAI47_15020	0.84	+0.2
3,167,945	-		IAI47_15020	0.84	-0.3
3,167,945	-		IAI47_15020	0.84	+0.9
3,168,024	+				+0.3
3,168,024	+				+1.0
3,168,024	+				+1.5
3,168,025	-				-0.6
3,168,047	+				-1.9
3,168,047	+				-0.9
3,168,048	-				-0.4
3,168,065	+				+1.2
3,168,066	-				-0.7
3,168,066	-				-1.4
3,168,066	-				+0.9
3,168,066	-				-0.5
3,168,066	-				+1.2
3,168,090	+				+0.1
3,168,090	+				+0.6
3,168,090	+				-1.2
3,168,091	-				+0.3
3,168,091	-				-0.5
3,168,091	-				-0.2
3,168,110	+				-0.3
3,168,110	+				+0.3
3,168,111	-				-1.0
3,168,129	+				-0.1
3,168,129	+				+0.9
3,168,129	+				+1.6
3,168,130	-				-2.2
3,168,130	-				-0.4
3,168,130	-				-0.2
3,168,130	-				-0.3
3,168,130	-				-0.1
3,168,130	-				+1.2
3,168,150	-				-0.1
3,168,150	-				-0.1
3,168,159	+				-0.7
3,168,159	+				-0.3
3,168,159	+				-0.4
3,168,159	+				+1.0
3,168,159	+				-0.3
3,168,159	+				+0.2
3,168,159	+				-0.0
3,168,159	+				-0.9
3,168,159	+				-0.9
3,168,159	+				+1.0
3,168,159	+				+0.1
3,168,159	+				-2.0
3,168,160	-				+0.7
3,168,160	-				-0.4
3,168,160	-				-0.4
3,168,160	-				-0.9
3,168,160	-				-0.0
3,168,160	-				+0.5
3,168,160	-				-0.3
3,168,160	-				+1.1
3,168,160	-				-1.4
3,168,160	-				+0.6
3,168,352	+		IAI47_15025	0.28	-1.3
3,168,352	+		IAI47_15025	0.28	+0.5
3,168,353	-		IAI47_15025	0.28	+1.7
3,168,353	-		IAI47_15025	0.28	+0.7
3,168,765	+		IAI47_15025	0.81	-0.2
3,168,863	+				-0.2
3,168,863	+				+0.4
3,168,863	+				-0.1
3,168,863	+				+0.5
3,168,863	+				-0.9
3,168,864	-				+2.0
3,168,865	+				-0.6
3,168,865	+				+0.8
3,168,865	+				-0.0
3,168,865	+				-2.7
3,168,865	+				+0.0
3,168,865	+				+0.1
3,168,866	-				+1.6
3,168,866	-				+0.9
3,168,866	-				-0.2
3,168,866	-				-1.2
3,168,866	-				+1.7
3,168,930	+				+0.6
3,168,930	+				+0.9
3,168,930	+				+0.3
3,168,931	-				-0.7
3,168,931	-				+0.5
3,168,931	-				-0.6
3,168,931	-				-0.7
3,168,946	+				-1.1
3,168,946	+				-1.1
3,168,946	+				-2.3
3,168,947	-				-0.8
3,168,947	-				+1.1
3,168,947	-				+0.1
3,168,947	-				+1.1
3,168,961	+				+0.8
3,168,961	+				+0.2
3,168,961	+				+1.2
3,168,961	+				-0.4
3,168,962	-				+0.8
3,168,962	-				-0.5
3,168,992	-				+0.6
3,168,992	-				+0.2
3,169,073	-		IAI47_15030	0.10	+0.4
3,169,093	+		IAI47_15030	0.11	-1.5
3,169,094	-		IAI47_15030	0.11	-0.3
3,169,094	-		IAI47_15030	0.11	+0.1
3,169,094	-		IAI47_15030	0.11	-0.5