Strain Fitness in Pantoea sp. MT58 around IAI47_05570

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,172,358	+		IAI47_05565	0.56	+0.1
1,172,358	+		IAI47_05565	0.56	-1.0
1,172,358	+		IAI47_05565	0.56	-0.0
1,172,401	-		IAI47_05565	0.58	+1.6
1,172,401	-		IAI47_05565	0.58	+0.5
1,172,412	+		IAI47_05565	0.59	+0.3
1,172,413	-		IAI47_05565	0.59	+0.2
1,172,413	-		IAI47_05565	0.59	+0.1
1,172,413	-		IAI47_05565	0.59	+0.7
1,172,413	-		IAI47_05565	0.59	+0.8
1,172,413	-		IAI47_05565	0.59	-0.0
1,172,413	-		IAI47_05565	0.59	+0.9
1,172,413	-		IAI47_05565	0.59	+0.6
1,172,413	-		IAI47_05565	0.59	-0.3
1,172,502	+		IAI47_05565	0.64	-1.0
1,172,503	-		IAI47_05565	0.64	-0.1
1,172,503	-		IAI47_05565	0.64	+2.2
1,172,503	-		IAI47_05565	0.64	+0.3
1,172,503	-		IAI47_05565	0.64	-1.1
1,172,542	-		IAI47_05565	0.67	+0.2
1,172,718	+		IAI47_05565	0.77	-2.8
1,172,719	-		IAI47_05565	0.77	-0.1
1,172,754	+		IAI47_05565	0.79	-1.7
1,172,754	+		IAI47_05565	0.79	+0.4
1,172,755	-		IAI47_05565	0.79	-0.1
1,172,755	-		IAI47_05565	0.79	-2.0
1,172,788	-		IAI47_05565	0.81	-0.3
1,172,925	+		IAI47_05565	0.89	-0.4
1,172,926	-		IAI47_05565	0.90	+0.1
1,172,927	-		IAI47_05565	0.90	+2.2
1,173,079	+				+0.1
1,173,079	+				+0.6
1,173,080	-				-1.0
1,173,080	-				-0.0
1,173,133	+				-0.3
1,173,133	+				+0.8
1,173,133	+				-0.1
1,173,133	+				+0.8
1,173,133	+				-0.8
1,173,133	+				-1.1
1,173,134	-				+1.1
1,173,134	-				-1.0
1,173,162	-				-0.4
1,173,189	+				+0.2
1,173,189	+				-0.8
1,173,189	+				+1.0
1,173,293	+				+1.2
1,173,293	+				+0.9
1,173,293	+				+0.1
1,173,294	-				-0.6
1,173,294	-				-2.1
1,173,319	-				-0.5
1,173,376	+				-0.6
1,173,376	+				+0.6
1,173,377	-				-0.4
1,173,377	-				-0.2
1,173,386	+				+0.7
1,173,387	-				-0.3
1,173,387	-				-0.0
1,173,391	+				+0.5
1,173,391	+				+1.3
1,173,392	-				+0.7
1,173,454	+		IAI47_05570	0.19	+0.7
1,173,533	+		IAI47_05570	0.34	-0.4
1,173,534	-		IAI47_05570	0.34	+0.3
1,173,611	+		IAI47_05570	0.49	-1.3
1,173,633	+		IAI47_05570	0.53	+0.8
1,173,633	+		IAI47_05570	0.53	-1.6
1,173,633	+		IAI47_05570	0.53	+1.2
1,173,633	+		IAI47_05570	0.53	-0.2
1,173,633	+		IAI47_05570	0.53	-0.0
1,173,633	+		IAI47_05570	0.53	-1.6
1,173,633	+		IAI47_05570	0.53	+1.2
1,173,634	-		IAI47_05570	0.53	+0.7
1,173,634	-		IAI47_05570	0.53	+1.4
1,173,635	+		IAI47_05570	0.54	-0.4
1,173,635	+		IAI47_05570	0.54	+0.4
1,173,635	+		IAI47_05570	0.54	-1.5
1,173,635	+		IAI47_05570	0.54	+0.4
1,173,635	+		IAI47_05570	0.54	+0.2
1,173,635	+		IAI47_05570	0.54	+2.7
1,173,635	+		IAI47_05570	0.54	+0.2
1,173,635	+		IAI47_05570	0.54	+0.1
1,173,635	+		IAI47_05570	0.54	+2.6
1,173,635	+		IAI47_05570	0.54	-0.4
1,173,636	-		IAI47_05570	0.54	+0.1
1,173,636	-		IAI47_05570	0.54	+1.0
1,173,636	-		IAI47_05570	0.54	+0.2
1,173,636	-		IAI47_05570	0.54	+0.1
1,173,636	-		IAI47_05570	0.54	+1.6
1,173,636	-		IAI47_05570	0.54	-0.4
1,173,636	-		IAI47_05570	0.54	-0.8
1,173,636	-		IAI47_05570	0.54	-1.0
1,173,666	+		IAI47_05570	0.59	+1.1
1,173,666	+		IAI47_05570	0.59	-0.1
1,173,667	-		IAI47_05570	0.60	-1.9
1,173,667	-		IAI47_05570	0.60	-1.4
1,173,812	+		IAI47_05570	0.87	+0.8
1,173,813	-		IAI47_05570	0.87	+1.7
1,173,813	-		IAI47_05570	0.87	-0.6
1,173,816	+		IAI47_05570	0.88	-1.8
1,173,816	+		IAI47_05570	0.88	-0.1
1,173,816	+		IAI47_05570	0.88	+1.1
1,173,816	+		IAI47_05570	0.88	+0.1
1,173,817	-		IAI47_05570	0.88	+0.3
1,173,817	-		IAI47_05570	0.88	-0.4
1,173,817	-		IAI47_05570	0.88	-2.2
1,173,817	-		IAI47_05570	0.88	-0.1
1,173,921	+				-0.8
1,173,921	+				+0.8
1,173,921	+				+2.0
1,173,921	+				-0.4
1,173,922	-				-1.5
1,173,922	-				+0.7
1,173,922	-				+1.7
1,173,922	-				-0.1
1,173,976	+				-1.2
1,173,977	-				+0.3
1,173,977	-				+1.2
1,173,977	-				-0.8
1,173,980	+				+0.6
1,173,981	-				+0.4
1,173,981	-				+0.9
1,174,004	+				-1.8
1,174,042	+				-0.3
1,174,042	+				-1.5
1,174,042	+				-0.4
1,174,042	+				-0.5
1,174,043	-				+0.6
1,174,050	+				-1.1
1,174,051	-				+0.2
1,174,051	-				+2.1
1,174,106	+				-0.1
1,174,106	+				-2.3
1,174,107	-				+1.8
1,174,107	-				+0.7
1,174,107	-				-0.0
1,174,204	-		IAI47_05575	0.17	+1.1
1,174,254	+		IAI47_05575	0.21	-0.0
1,174,254	+		IAI47_05575	0.21	-0.4
1,174,254	+		IAI47_05575	0.21	-1.0
1,174,254	+		IAI47_05575	0.21	-1.5
1,174,255	-		IAI47_05575	0.21	+1.6
1,174,255	-		IAI47_05575	0.21	-0.1
1,174,255	-		IAI47_05575	0.21	+0.3
1,174,267	-		IAI47_05575	0.22	-0.0
1,174,369	+		IAI47_05575	0.30	-1.1
1,174,370	-		IAI47_05575	0.30	+0.7
1,174,400	+		IAI47_05575	0.33	-0.2
1,174,400	+		IAI47_05575	0.33	+0.8
1,174,400	+		IAI47_05575	0.33	+0.7
1,174,400	+		IAI47_05575	0.33	+0.9
1,174,400	+		IAI47_05575	0.33	+1.7
1,174,401	-		IAI47_05575	0.33	-0.5
1,174,401	-		IAI47_05575	0.33	-1.3
1,174,401	-		IAI47_05575	0.33	+1.0
1,174,404	+		IAI47_05575	0.33	+1.9
1,174,404	+				-0.1
1,174,404	+		IAI47_05575	0.33	-0.7
1,174,404	+		IAI47_05575	0.33	+0.5
1,174,404	+		IAI47_05575	0.33	-0.3
1,174,405	-		IAI47_05575	0.33	-1.4
1,174,405	-		IAI47_05575	0.33	-0.8
1,174,405	-		IAI47_05575	0.33	-1.5
1,174,405	-		IAI47_05575	0.33	+1.4
1,174,405	-		IAI47_05575	0.33	-0.2
1,174,405	-		IAI47_05575	0.33	-1.8
1,174,405	-		IAI47_05575	0.33	-0.8
1,174,487	+		IAI47_05575	0.40	-0.2
1,174,487	+		IAI47_05575	0.40	-0.3
1,174,487	+		IAI47_05575	0.40	-1.8
1,174,488	-		IAI47_05575	0.40	-0.2
1,174,602	+		IAI47_05575	0.49	-0.1
1,174,603	-		IAI47_05575	0.49	+0.9
1,174,603	-		IAI47_05575	0.49	+1.1
1,174,603	-		IAI47_05575	0.49	-1.2
1,174,609	+		IAI47_05575	0.50	-0.7
1,174,609	+		IAI47_05575	0.50	-0.3
1,174,609	+		IAI47_05575	0.50	-0.5
1,174,610	-		IAI47_05575	0.50	+0.3
1,174,610	-		IAI47_05575	0.50	+1.0
1,174,610	-		IAI47_05575	0.50	-1.0
1,174,632	+		IAI47_05575	0.52	-0.1
1,174,632	+		IAI47_05575	0.52	+0.5
1,174,633	-		IAI47_05575	0.52	+1.1
1,174,633	-		IAI47_05575	0.52	+0.1
1,174,647	+		IAI47_05575	0.53	+2.1
1,174,648	-		IAI47_05575	0.53	-1.5
1,174,648	-		IAI47_05575	0.53	+0.6
1,174,648	-		IAI47_05575	0.53	+0.4
1,174,648	-		IAI47_05575	0.53	+0.3
1,174,673	+		IAI47_05575	0.55	+0.3
1,174,731	+		IAI47_05575	0.60	+0.0
1,174,731	+		IAI47_05575	0.60	+0.1
1,174,732	-		IAI47_05575	0.60	+0.2
1,174,732	-		IAI47_05575	0.60	-1.1
1,174,732	-		IAI47_05575	0.60	-1.0
1,174,732	-		IAI47_05575	0.60	-0.2
1,174,732	-		IAI47_05575	0.60	-2.1
1,174,769	+		IAI47_05575	0.63	+1.2
1,174,772	+		IAI47_05575	0.63	+0.9
1,174,772	+		IAI47_05575	0.63	+1.9
1,174,772	+		IAI47_05575	0.63	+0.4
1,174,773	-		IAI47_05575	0.63	-0.2
1,174,773	-		IAI47_05575	0.63	-1.2
1,174,773	-		IAI47_05575	0.63	-0.0
1,174,773	-		IAI47_05575	0.63	-0.2
1,174,773	-		IAI47_05575	0.63	-2.0
1,174,809	+		IAI47_05575	0.66	+0.4
1,174,809	+		IAI47_05575	0.66	+0.4
1,174,809	+		IAI47_05575	0.66	-0.9
1,174,818	+		IAI47_05575	0.67	+1.4
1,174,818	+		IAI47_05575	0.67	+1.7
1,174,819	-		IAI47_05575	0.67	+1.0