Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03165 and IAI47_03170 are separated by 380 nucleotides IAI47_03170 and IAI47_03175 are separated by 47 nucleotides IAI47_03175 and IAI47_03180 are separated by 167 nucleotides
IAI47_03165: IAI47_03165 - LysR family transcriptional regulator, at 655,651 to 656,550
_03165
IAI47_03170: IAI47_03170 - antibiotic biosynthesis monooxygenase, at 656,931 to 657,239
_03170
IAI47_03175: IAI47_03175 - NAD(P)H-dependent oxidoreductase, at 657,287 to 657,868
_03175
IAI47_03180: IAI47_03180 - transporter substrate-binding domain-containing protein, at 658,036 to 658,800
_03180
Position (kb) 656
657
658 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 655.985 kb on + strand, within IAI47_03165 at 655.986 kb on - strand, within IAI47_03165 at 655.986 kb on - strand, within IAI47_03165 at 656.039 kb on + strand, within IAI47_03165 at 656.040 kb on + strand, within IAI47_03165 at 656.040 kb on + strand, within IAI47_03165 at 656.040 kb on + strand, within IAI47_03165 at 656.040 kb on + strand, within IAI47_03165 at 656.041 kb on - strand, within IAI47_03165 at 656.041 kb on - strand, within IAI47_03165 at 656.043 kb on + strand, within IAI47_03165 at 656.043 kb on + strand, within IAI47_03165 at 656.043 kb on + strand, within IAI47_03165 at 656.043 kb on + strand, within IAI47_03165 at 656.043 kb on + strand, within IAI47_03165 at 656.043 kb on + strand, within IAI47_03165 at 656.044 kb on - strand, within IAI47_03165 at 656.044 kb on - strand, within IAI47_03165 at 656.044 kb on - strand, within IAI47_03165 at 656.079 kb on + strand, within IAI47_03165 at 656.079 kb on + strand, within IAI47_03165 at 656.080 kb on - strand, within IAI47_03165 at 656.080 kb on - strand, within IAI47_03165 at 656.080 kb on - strand, within IAI47_03165 at 656.080 kb on - strand, within IAI47_03165 at 656.080 kb on - strand, within IAI47_03165 at 656.106 kb on + strand, within IAI47_03165 at 656.106 kb on + strand, within IAI47_03165 at 656.106 kb on + strand, within IAI47_03165 at 656.106 kb on + strand, within IAI47_03165 at 656.106 kb on + strand, within IAI47_03165 at 656.106 kb on + strand, within IAI47_03165 at 656.106 kb on + strand, within IAI47_03165 at 656.107 kb on - strand, within IAI47_03165 at 656.107 kb on - strand, within IAI47_03165 at 656.107 kb on - strand, within IAI47_03165 at 656.107 kb on - strand, within IAI47_03165 at 656.107 kb on - strand, within IAI47_03165 at 656.107 kb on - strand, within IAI47_03165 at 656.111 kb on + strand, within IAI47_03165 at 656.111 kb on + strand, within IAI47_03165 at 656.111 kb on + strand, within IAI47_03165 at 656.111 kb on + strand, within IAI47_03165 at 656.111 kb on + strand, within IAI47_03165 at 656.111 kb on + strand, within IAI47_03165 at 656.111 kb on + strand, within IAI47_03165 at 656.111 kb on + strand, within IAI47_03165 at 656.111 kb on + strand, within IAI47_03165 at 656.111 kb on + strand, within IAI47_03165 at 656.111 kb on + strand, within IAI47_03165 at 656.111 kb on + strand, within IAI47_03165 at 656.111 kb on + strand, within IAI47_03165 at 656.111 kb on + strand, within IAI47_03165 at 656.112 kb on - strand, within IAI47_03165 at 656.112 kb on - strand, within IAI47_03165 at 656.112 kb on - strand, within IAI47_03165 at 656.112 kb on - strand, within IAI47_03165 at 656.112 kb on - strand, within IAI47_03165 at 656.112 kb on - strand, within IAI47_03165 at 656.112 kb on - strand, within IAI47_03165 at 656.112 kb on - strand, within IAI47_03165 at 656.112 kb on - strand, within IAI47_03165 at 656.164 kb on + strand, within IAI47_03165 at 656.164 kb on + strand, within IAI47_03165 at 656.165 kb on - strand, within IAI47_03165 at 656.229 kb on + strand, within IAI47_03165 at 656.229 kb on + strand, within IAI47_03165 at 656.229 kb on + strand, within IAI47_03165 at 656.230 kb on - strand, within IAI47_03165 at 656.230 kb on - strand, within IAI47_03165 at 656.289 kb on + strand, within IAI47_03165 at 656.289 kb on + strand, within IAI47_03165 at 656.289 kb on + strand, within IAI47_03165 at 656.290 kb on - strand, within IAI47_03165 at 656.290 kb on - strand, within IAI47_03165 at 656.290 kb on - strand, within IAI47_03165 at 656.290 kb on - strand, within IAI47_03165 at 656.290 kb on - strand, within IAI47_03165 at 656.292 kb on + strand, within IAI47_03165 at 656.292 kb on + strand, within IAI47_03165 at 656.292 kb on + strand, within IAI47_03165 at 656.293 kb on - strand, within IAI47_03165 at 656.293 kb on - strand, within IAI47_03165 at 656.293 kb on - strand, within IAI47_03165 at 656.301 kb on + strand, within IAI47_03165 at 656.301 kb on + strand, within IAI47_03165 at 656.301 kb on + strand, within IAI47_03165 at 656.301 kb on + strand, within IAI47_03165 at 656.302 kb on - strand, within IAI47_03165 at 656.364 kb on + strand, within IAI47_03165 at 656.364 kb on + strand, within IAI47_03165 at 656.365 kb on - strand, within IAI47_03165 at 656.365 kb on - strand, within IAI47_03165 at 656.417 kb on + strand, within IAI47_03165 at 656.418 kb on - strand, within IAI47_03165 at 656.465 kb on - strand at 656.465 kb on - strand at 656.549 kb on - strand at 656.601 kb on + strand at 656.601 kb on + strand at 656.601 kb on + strand at 656.601 kb on + strand at 656.601 kb on + strand at 656.601 kb on + strand at 656.601 kb on + strand at 656.601 kb on + strand at 656.601 kb on + strand at 656.602 kb on - strand at 656.639 kb on + strand at 656.639 kb on + strand at 656.640 kb on - strand at 656.640 kb on - strand at 656.640 kb on - strand at 656.643 kb on + strand at 656.643 kb on + strand at 656.644 kb on - strand at 656.644 kb on - strand at 656.644 kb on - strand at 656.644 kb on - strand at 656.644 kb on - strand at 656.890 kb on + strand at 656.891 kb on - strand at 656.891 kb on - strand at 656.900 kb on + strand at 656.900 kb on + strand at 656.900 kb on + strand at 656.900 kb on + strand at 656.900 kb on + strand at 656.901 kb on - strand at 656.901 kb on - strand at 656.901 kb on - strand at 656.901 kb on - strand at 656.901 kb on - strand at 656.928 kb on + strand at 656.928 kb on + strand at 656.929 kb on - strand at 656.929 kb on - strand at 656.929 kb on - strand at 656.929 kb on - strand at 656.981 kb on + strand, within IAI47_03170 at 656.982 kb on - strand, within IAI47_03170 at 656.982 kb on - strand, within IAI47_03170 at 657.057 kb on + strand, within IAI47_03170 at 657.057 kb on + strand, within IAI47_03170 at 657.057 kb on + strand, within IAI47_03170 at 657.057 kb on + strand, within IAI47_03170 at 657.057 kb on + strand, within IAI47_03170 at 657.058 kb on - strand, within IAI47_03170 at 657.127 kb on + strand, within IAI47_03170 at 657.127 kb on + strand at 657.127 kb on + strand, within IAI47_03170 at 657.128 kb on - strand, within IAI47_03170 at 657.128 kb on - strand, within IAI47_03170 at 657.128 kb on - strand, within IAI47_03170 at 657.128 kb on - strand, within IAI47_03170 at 657.150 kb on + strand, within IAI47_03170 at 657.150 kb on + strand, within IAI47_03170 at 657.151 kb on - strand, within IAI47_03170 at 657.151 kb on - strand, within IAI47_03170 at 657.266 kb on + strand at 657.266 kb on + strand at 657.267 kb on - strand at 657.289 kb on - strand at 657.289 kb on - strand at 657.304 kb on + strand at 657.305 kb on - strand at 657.305 kb on - strand at 657.328 kb on + strand at 657.328 kb on + strand at 657.328 kb on + strand at 657.328 kb on + strand at 657.328 kb on + strand at 657.329 kb on - strand at 657.329 kb on - strand at 657.370 kb on + strand, within IAI47_03175 at 657.370 kb on + strand, within IAI47_03175 at 657.370 kb on + strand, within IAI47_03175 at 657.370 kb on + strand, within IAI47_03175 at 657.370 kb on + strand, within IAI47_03175 at 657.371 kb on - strand, within IAI47_03175 at 657.371 kb on - strand, within IAI47_03175 at 657.371 kb on - strand, within IAI47_03175 at 657.371 kb on - strand, within IAI47_03175 at 657.426 kb on + strand, within IAI47_03175 at 657.426 kb on + strand, within IAI47_03175 at 657.427 kb on - strand, within IAI47_03175 at 657.427 kb on - strand, within IAI47_03175 at 657.427 kb on - strand, within IAI47_03175 at 657.472 kb on + strand, within IAI47_03175 at 657.472 kb on + strand, within IAI47_03175 at 657.473 kb on - strand, within IAI47_03175 at 657.473 kb on - strand, within IAI47_03175 at 657.473 kb on - strand, within IAI47_03175 at 657.482 kb on + strand, within IAI47_03175 at 657.482 kb on + strand, within IAI47_03175 at 657.483 kb on - strand, within IAI47_03175 at 657.511 kb on + strand, within IAI47_03175 at 657.511 kb on + strand, within IAI47_03175 at 657.511 kb on + strand, within IAI47_03175 at 657.511 kb on + strand, within IAI47_03175 at 657.511 kb on + strand, within IAI47_03175 at 657.511 kb on + strand, within IAI47_03175 at 657.512 kb on - strand, within IAI47_03175 at 657.512 kb on - strand, within IAI47_03175 at 657.512 kb on - strand, within IAI47_03175 at 657.512 kb on - strand, within IAI47_03175 at 657.513 kb on + strand, within IAI47_03175 at 657.514 kb on - strand, within IAI47_03175 at 657.514 kb on - strand, within IAI47_03175 at 657.514 kb on - strand, within IAI47_03175 at 657.514 kb on - strand, within IAI47_03175 at 657.514 kb on - strand, within IAI47_03175 at 657.546 kb on + strand, within IAI47_03175 at 657.546 kb on + strand, within IAI47_03175 at 657.547 kb on - strand, within IAI47_03175 at 657.547 kb on - strand, within IAI47_03175 at 657.611 kb on - strand, within IAI47_03175 at 657.627 kb on + strand, within IAI47_03175 at 657.627 kb on + strand, within IAI47_03175 at 657.627 kb on + strand, within IAI47_03175 at 657.627 kb on + strand, within IAI47_03175 at 657.627 kb on + strand, within IAI47_03175 at 657.627 kb on + strand, within IAI47_03175 at 657.628 kb on - strand, within IAI47_03175 at 657.675 kb on + strand, within IAI47_03175 at 657.700 kb on - strand, within IAI47_03175 at 657.700 kb on - strand, within IAI47_03175 at 657.700 kb on - strand, within IAI47_03175 at 657.700 kb on - strand, within IAI47_03175 at 657.700 kb on - strand, within IAI47_03175 at 657.700 kb on - strand, within IAI47_03175 at 657.700 kb on - strand, within IAI47_03175 at 657.700 kb on - strand, within IAI47_03175 at 657.700 kb on - strand, within IAI47_03175 at 657.726 kb on + strand, within IAI47_03175 at 657.726 kb on + strand, within IAI47_03175 at 657.726 kb on + strand, within IAI47_03175 at 657.726 kb on + strand, within IAI47_03175 at 657.727 kb on - strand, within IAI47_03175 at 657.727 kb on - strand, within IAI47_03175 at 657.727 kb on - strand, within IAI47_03175 at 657.727 kb on - strand, within IAI47_03175 at 657.727 kb on - strand, within IAI47_03175 at 657.727 kb on - strand, within IAI47_03175 at 657.766 kb on + strand, within IAI47_03175 at 657.766 kb on + strand, within IAI47_03175 at 657.767 kb on - strand, within IAI47_03175 at 657.820 kb on + strand at 657.820 kb on + strand at 657.821 kb on - strand at 657.850 kb on + strand at 657.850 kb on + strand at 657.851 kb on - strand at 657.854 kb on + strand at 657.855 kb on - strand at 657.855 kb on - strand at 657.894 kb on - strand at 657.902 kb on + strand at 657.903 kb on - strand at 657.903 kb on - strand at 657.907 kb on + strand at 657.907 kb on + strand at 657.907 kb on + strand at 657.907 kb on + strand at 657.907 kb on + strand at 657.907 kb on + strand at 657.907 kb on + strand at 657.907 kb on + strand at 657.907 kb on + strand at 657.907 kb on + strand at 657.907 kb on + strand at 657.907 kb on + strand at 657.907 kb on + strand at 657.907 kb on + strand at 657.907 kb on + strand at 657.907 kb on + strand at 657.907 kb on + strand at 657.908 kb on - strand at 657.908 kb on - strand at 657.908 kb on - strand at 657.939 kb on + strand at 657.940 kb on - strand at 657.940 kb on - strand at 657.940 kb on - strand at 657.972 kb on + strand at 657.972 kb on + strand at 657.972 kb on + strand at 657.972 kb on + strand at 657.972 kb on + strand at 657.973 kb on - strand at 657.973 kb on - strand at 657.973 kb on - strand at 657.973 kb on - strand at 657.973 kb on - strand at 657.973 kb on - strand at 657.983 kb on - strand at 657.983 kb on - strand at 658.059 kb on - strand at 658.116 kb on + strand, within IAI47_03180 at 658.147 kb on + strand, within IAI47_03180 at 658.147 kb on + strand, within IAI47_03180 at 658.147 kb on + strand, within IAI47_03180 at 658.147 kb on + strand, within IAI47_03180 at 658.156 kb on + strand, within IAI47_03180 at 658.156 kb on + strand, within IAI47_03180 at 658.156 kb on + strand, within IAI47_03180 at 658.156 kb on + strand, within IAI47_03180 at 658.156 kb on + strand, within IAI47_03180 at 658.156 kb on + strand, within IAI47_03180 at 658.156 kb on + strand, within IAI47_03180 at 658.157 kb on - strand, within IAI47_03180 at 658.157 kb on - strand, within IAI47_03180 at 658.157 kb on - strand, within IAI47_03180 at 658.157 kb on - strand, within IAI47_03180 at 658.157 kb on - strand, within IAI47_03180 at 658.183 kb on + strand, within IAI47_03180 at 658.183 kb on + strand, within IAI47_03180 at 658.183 kb on + strand, within IAI47_03180 at 658.183 kb on + strand, within IAI47_03180 at 658.184 kb on - strand, within IAI47_03180 at 658.184 kb on - strand, within IAI47_03180 at 658.184 kb on - strand, within IAI47_03180
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 655,985 + IAI47_03165 0.37 -1.9 655,986 - IAI47_03165 0.37 -0.6 655,986 - IAI47_03165 0.37 +0.7 656,039 + IAI47_03165 0.43 -0.5 656,040 + IAI47_03165 0.43 +1.7 656,040 + IAI47_03165 0.43 -0.6 656,040 + IAI47_03165 0.43 -0.9 656,040 + IAI47_03165 0.43 +0.7 656,041 - IAI47_03165 0.43 +1.1 656,041 - IAI47_03165 0.43 -0.9 656,043 + IAI47_03165 0.44 -2.1 656,043 + IAI47_03165 0.44 +1.1 656,043 + IAI47_03165 0.44 +0.5 656,043 + IAI47_03165 0.44 +0.1 656,043 + IAI47_03165 0.44 +0.5 656,043 + IAI47_03165 0.44 +3.2 656,044 - IAI47_03165 0.44 -0.7 656,044 - IAI47_03165 0.44 +1.4 656,044 - IAI47_03165 0.44 +1.5 656,079 + IAI47_03165 0.48 +2.7 656,079 + IAI47_03165 0.48 -0.5 656,080 - IAI47_03165 0.48 -2.2 656,080 - IAI47_03165 0.48 -0.3 656,080 - IAI47_03165 0.48 -1.7 656,080 - IAI47_03165 0.48 -0.8 656,080 - IAI47_03165 0.48 +1.2 656,106 + IAI47_03165 0.51 -0.6 656,106 + IAI47_03165 0.51 -0.5 656,106 + IAI47_03165 0.51 -0.6 656,106 + IAI47_03165 0.51 -0.3 656,106 + IAI47_03165 0.51 -1.4 656,106 + IAI47_03165 0.51 -1.9 656,106 + IAI47_03165 0.51 -0.4 656,107 - IAI47_03165 0.51 -1.2 656,107 - IAI47_03165 0.51 -0.2 656,107 - IAI47_03165 0.51 -0.1 656,107 - IAI47_03165 0.51 -1.2 656,107 - IAI47_03165 0.51 -2.2 656,107 - IAI47_03165 0.51 +1.0 656,111 + IAI47_03165 0.51 -0.9 656,111 + IAI47_03165 0.51 +1.1 656,111 + IAI47_03165 0.51 -0.7 656,111 + IAI47_03165 0.51 -0.0 656,111 + IAI47_03165 0.51 -0.7 656,111 + IAI47_03165 0.51 +0.1 656,111 + IAI47_03165 0.51 +1.2 656,111 + IAI47_03165 0.51 +0.5 656,111 + IAI47_03165 0.51 +0.5 656,111 + IAI47_03165 0.51 -1.5 656,111 + IAI47_03165 0.51 +0.3 656,111 + IAI47_03165 0.51 +2.1 656,111 + IAI47_03165 0.51 +1.6 656,111 + IAI47_03165 0.51 +0.2 656,112 - IAI47_03165 0.51 +1.0 656,112 - IAI47_03165 0.51 -0.3 656,112 - IAI47_03165 0.51 +0.5 656,112 - IAI47_03165 0.51 +0.1 656,112 - IAI47_03165 0.51 +1.8 656,112 - IAI47_03165 0.51 -0.4 656,112 - IAI47_03165 0.51 -0.8 656,112 - IAI47_03165 0.51 -1.0 656,112 - IAI47_03165 0.51 -0.2 656,164 + IAI47_03165 0.57 +0.7 656,164 + IAI47_03165 0.57 -0.1 656,165 - IAI47_03165 0.57 -0.9 656,229 + IAI47_03165 0.64 +0.2 656,229 + IAI47_03165 0.64 +0.5 656,229 + IAI47_03165 0.64 -0.6 656,230 - IAI47_03165 0.64 -0.5 656,230 - IAI47_03165 0.64 +0.1 656,289 + IAI47_03165 0.71 -0.7 656,289 + IAI47_03165 0.71 +1.0 656,289 + IAI47_03165 0.71 -0.3 656,290 - IAI47_03165 0.71 -0.2 656,290 - IAI47_03165 0.71 +0.3 656,290 - IAI47_03165 0.71 -0.2 656,290 - IAI47_03165 0.71 -1.7 656,290 - IAI47_03165 0.71 +0.6 656,292 + IAI47_03165 0.71 +0.7 656,292 + IAI47_03165 0.71 +0.8 656,292 + IAI47_03165 0.71 -0.2 656,293 - IAI47_03165 0.71 -1.7 656,293 - IAI47_03165 0.71 -0.7 656,293 - IAI47_03165 0.71 +1.2 656,301 + IAI47_03165 0.72 +0.6 656,301 + IAI47_03165 0.72 +0.5 656,301 + IAI47_03165 0.72 +0.5 656,301 + IAI47_03165 0.72 -0.1 656,302 - IAI47_03165 0.72 +1.2 656,364 + IAI47_03165 0.79 +0.8 656,364 + IAI47_03165 0.79 -1.0 656,365 - IAI47_03165 0.79 +0.3 656,365 - IAI47_03165 0.79 +0.2 656,417 + IAI47_03165 0.85 -1.5 656,418 - IAI47_03165 0.85 +1.0 656,465 - +0.8 656,465 - +0.4 656,549 - +0.3 656,601 + -0.5 656,601 + +0.4 656,601 + -0.2 656,601 + -0.1 656,601 + -1.0 656,601 + +1.3 656,601 + -0.1 656,601 + +1.8 656,601 + -0.5 656,602 - -0.9 656,639 + -0.5 656,639 + +1.2 656,640 - -0.4 656,640 - +2.3 656,640 - -0.7 656,643 + +0.3 656,643 + -0.3 656,644 - -1.1 656,644 - +1.0 656,644 - -0.8 656,644 - -0.6 656,644 - -0.0 656,890 + -0.2 656,891 - +0.4 656,891 - -0.1 656,900 + -0.7 656,900 + +0.8 656,900 + -1.5 656,900 + +0.3 656,900 + -0.3 656,901 - -0.5 656,901 - -0.5 656,901 - +0.2 656,901 - +1.2 656,901 - -2.1 656,928 + -1.0 656,928 + +0.8 656,929 - -1.0 656,929 - +1.0 656,929 - +0.2 656,929 - -1.7 656,981 + IAI47_03170 0.16 +2.0 656,982 - IAI47_03170 0.17 -0.5 656,982 - IAI47_03170 0.17 +0.5 657,057 + IAI47_03170 0.41 -0.5 657,057 + IAI47_03170 0.41 +0.6 657,057 + IAI47_03170 0.41 +0.1 657,057 + IAI47_03170 0.41 +2.7 657,057 + IAI47_03170 0.41 -0.6 657,058 - IAI47_03170 0.41 +1.5 657,127 + IAI47_03170 0.63 +0.5 657,127 + +1.2 657,127 + IAI47_03170 0.63 +0.7 657,128 - IAI47_03170 0.64 +0.5 657,128 - IAI47_03170 0.64 +1.7 657,128 - IAI47_03170 0.64 +0.7 657,128 - IAI47_03170 0.64 +0.7 657,150 + IAI47_03170 0.71 +0.3 657,150 + IAI47_03170 0.71 -0.7 657,151 - 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Or see this region's nucleotide sequence