Strain Fitness in Pantoea sp. MT58 around IAI47_18610

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,965,362	+		IAI47_18605	0.75	-0.3
3,965,363	-		IAI47_18605	0.75	+0.4
3,965,380	+		IAI47_18605	0.75	+0.8
3,965,380	+		IAI47_18605	0.75	-0.5
3,965,380	+		IAI47_18605	0.75	+1.7
3,965,381	-		IAI47_18605	0.75	+0.6
3,965,404	+		IAI47_18605	0.76	-0.3
3,965,404	+		IAI47_18605	0.76	+0.8
3,965,404	+		IAI47_18605	0.76	-1.6
3,965,404	+		IAI47_18605	0.76	+1.5
3,965,404	+		IAI47_18605	0.76	+1.1
3,965,405	-		IAI47_18605	0.76	-0.8
3,965,405	-		IAI47_18605	0.76	+0.5
3,965,405	-		IAI47_18605	0.76	+2.1
3,965,405	-		IAI47_18605	0.76	-0.5
3,965,405	-		IAI47_18605	0.76	-0.5
3,965,405	-		IAI47_18605	0.76	-1.3
3,965,405	-		IAI47_18605	0.76	-0.8
3,965,544	+		IAI47_18605	0.80	+1.4
3,965,545	+		IAI47_18605	0.80	+2.0
3,965,546	-		IAI47_18605	0.80	+0.5
3,965,546	-		IAI47_18605	0.80	-2.5
3,965,548	+		IAI47_18605	0.80	+1.4
3,965,548	+		IAI47_18605	0.80	-1.4
3,965,548	+		IAI47_18605	0.80	+0.9
3,965,548	+		IAI47_18605	0.80	+0.8
3,965,548	+		IAI47_18605	0.80	+1.5
3,965,549	-		IAI47_18605	0.80	-1.7
3,965,596	+		IAI47_18605	0.81	-1.5
3,965,596	+		IAI47_18605	0.81	-0.4
3,965,597	-		IAI47_18605	0.81	+0.5
3,965,669	+		IAI47_18605	0.83	+1.0
3,965,725	+		IAI47_18605	0.84	-0.7
3,965,725	+		IAI47_18605	0.84	+1.1
3,965,725	+		IAI47_18605	0.84	+0.6
3,965,725	+		IAI47_18605	0.84	-1.2
3,965,738	+		IAI47_18605	0.85	+0.7
3,965,838	-		IAI47_18605	0.87	-0.5
3,965,838	-		IAI47_18605	0.87	+0.7
3,965,845	+		IAI47_18605	0.87	-0.5
3,965,845	+		IAI47_18605	0.87	+0.2
3,965,845	+		IAI47_18605	0.87	-0.4
3,965,845	+		IAI47_18605	0.87	+1.6
3,965,845	+		IAI47_18605	0.87	+0.9
3,965,845	+		IAI47_18605	0.87	+1.9
3,965,845	+		IAI47_18605	0.87	+1.5
3,965,846	-		IAI47_18605	0.87	+0.3
3,965,848	+		IAI47_18605	0.88	+1.0
3,965,849	-		IAI47_18605	0.88	-1.3
3,965,849	-		IAI47_18605	0.88	-1.5
3,965,849	-		IAI47_18605	0.88	+0.0
3,965,886	-		IAI47_18605	0.89	-2.1
3,965,891	+		IAI47_18605	0.89	-1.9
3,965,891	+		IAI47_18605	0.89	-0.3
3,965,892	-		IAI47_18605	0.89	+1.7
3,965,892	-		IAI47_18605	0.89	-2.1
3,965,892	-		IAI47_18605	0.89	-1.2
3,965,908	-		IAI47_18605	0.89	-0.9
3,965,908	-		IAI47_18605	0.89	-0.2
3,965,922	-		IAI47_18605	0.89	+0.9
3,966,088	+				-0.6
3,966,088	+				+2.0
3,966,088	+				+0.8
3,966,089	-				+1.6
3,966,089	-				-1.1
3,966,103	+				+0.3
3,966,104	-				-2.4
3,966,104	-				+0.5
3,966,104	-				-0.8
3,966,117	-				+0.9
3,966,117	-				+0.3
3,966,190	+				+0.1
3,966,190	+				-2.4
3,966,190	+				-1.2
3,966,190	+				+1.4
3,966,190	+				+1.4
3,966,190	+				+0.3
3,966,191	-				-2.0
3,966,191	-				+2.1
3,966,191	-				+0.3
3,966,290	+				-0.2
3,966,291	-				-0.7
3,966,315	-				-0.7
3,966,315	-				+0.4
3,966,324	+				-0.6
3,966,324	+				+1.9
3,966,325	-				-1.2
3,966,327	+				+0.0
3,966,327	+				-1.5
3,966,327	+				-0.0
3,966,327	+				-1.9
3,966,327	+				-1.7
3,966,327	+				-0.2
3,966,327	+				-0.5
3,966,327	+				-0.7
3,966,327	+				-1.1
3,966,327	+				-0.8
3,966,327	+				+1.5
3,966,328	-				-1.1
3,966,328	-				+2.2
3,966,328	-				+1.0
3,966,328	-				-0.7
3,966,328	-				-2.3
3,966,328	-				-3.9
3,966,328	-				+0.3
3,966,328	-				-1.9
3,966,328	-				-0.1
3,966,328	-				-0.3
3,966,330	+				+0.2
3,966,330	+				-0.1
3,966,336	+				-2.1
3,966,336	+				+0.1
3,966,336	+				+0.0
3,966,336	+				+0.8
3,966,336	+				+1.5
3,966,337	-				+1.3
3,966,477	+				-0.7
3,966,478	-				+0.8
3,966,495	+				-1.5
3,966,495	+				+0.9
3,966,495	+				-1.5
3,966,495	+				-1.1
3,966,496	-				-0.4
3,966,496	-				-0.9
3,966,496	-				-1.6
3,966,496	-				-1.9
3,966,496	-				+1.9
3,966,496	-				-1.0
3,966,496	-				-1.1
3,966,547	+				-1.8
3,966,565	+				+1.5
3,966,565	+				-1.9
3,966,620	-				-0.8
3,966,696	+		IAI47_18610	0.12	-1.4
3,966,697	-		IAI47_18610	0.12	-2.1
3,966,735	+		IAI47_18610	0.14	-1.1
3,966,735	+		IAI47_18610	0.14	-0.0
3,966,736	-		IAI47_18610	0.14	-1.0
3,966,788	+		IAI47_18610	0.16	+1.1
3,966,843	+		IAI47_18610	0.17	-0.1
3,966,843	+		IAI47_18610	0.17	-1.2
3,966,843	+		IAI47_18610	0.17	+2.5
3,966,843	+		IAI47_18610	0.17	-0.9
3,966,843	+		IAI47_18610	0.17	-0.3
3,966,844	-		IAI47_18610	0.18	-0.8
3,966,844	-		IAI47_18610	0.18	+1.8
3,966,844	-		IAI47_18610	0.18	-2.4
3,966,871	+		IAI47_18610	0.18	-1.2
3,966,871	+		IAI47_18610	0.18	-1.3
3,966,872	-		IAI47_18610	0.18	+1.4
3,966,892	+		IAI47_18610	0.19	+0.0
3,966,893	-		IAI47_18610	0.19	-0.1
3,966,920	+		IAI47_18610	0.20	-1.4
3,966,920	+		IAI47_18610	0.20	-1.6
3,966,921	-		IAI47_18610	0.20	+0.8
3,966,921	-		IAI47_18610	0.20	-1.1
3,966,921	-		IAI47_18610	0.20	-1.3
3,966,992	-		IAI47_18610	0.23	-2.9
3,967,032	-		IAI47_18610	0.24	-0.6
3,967,032	-		IAI47_18610	0.24	+0.9
3,967,122	+		IAI47_18610	0.27	-0.8
3,967,122	+		IAI47_18610	0.27	-2.1
3,967,122	+		IAI47_18610	0.27	+0.9
3,967,123	-		IAI47_18610	0.27	+0.1
3,967,123	-		IAI47_18610	0.27	+0.3
3,967,123	-		IAI47_18610	0.27	-1.9
3,967,123	-		IAI47_18610	0.27	-0.4
3,967,123	-		IAI47_18610	0.27	-0.6
3,967,156	+		IAI47_18610	0.28	+0.5
3,967,198	+		IAI47_18610	0.30	-0.0
3,967,198	+		IAI47_18610	0.30	-1.6
3,967,198	+		IAI47_18610	0.30	+0.6
3,967,198	+		IAI47_18610	0.30	-0.4
3,967,198	+		IAI47_18610	0.30	-1.9
3,967,198	+		IAI47_18610	0.30	+0.4
3,967,198	+		IAI47_18610	0.30	+2.7
3,967,199	-		IAI47_18610	0.30	+1.1
3,967,199	-		IAI47_18610	0.30	-1.2
3,967,199	-		IAI47_18610	0.30	+1.3
3,967,199	-		IAI47_18610	0.30	-2.2
3,967,199	-		IAI47_18610	0.30	+0.3
3,967,199	-		IAI47_18610	0.30	-0.1
3,967,218	-		IAI47_18610	0.30	+0.5
3,967,218	-		IAI47_18610	0.30	+0.5
3,967,246	+		IAI47_18610	0.31	-1.1
3,967,246	+		IAI47_18610	0.31	+0.4
3,967,246	+		IAI47_18610	0.31	-0.2
3,967,249	+		IAI47_18610	0.31	-0.6
3,967,250	-		IAI47_18610	0.31	-1.8
3,967,257	+		IAI47_18610	0.32	-0.1
3,967,257	+		IAI47_18610	0.32	-1.1
3,967,257	+		IAI47_18610	0.32	-1.3
3,967,258	-		IAI47_18610	0.32	+0.5
3,967,281	+		IAI47_18610	0.33	-2.2
3,967,290	+		IAI47_18610	0.33	-2.1
3,967,290	+		IAI47_18610	0.33	-1.2
3,967,290	+		IAI47_18610	0.33	-0.2
3,967,311	+		IAI47_18610	0.34	-0.7
3,967,312	-		IAI47_18610	0.34	-1.1
3,967,312	-		IAI47_18610	0.34	-0.9
3,967,312	-		IAI47_18610	0.34	+0.7
3,967,337	+		IAI47_18610	0.34	-0.5
3,967,372	+		IAI47_18610	0.36	-0.1
3,967,372	+		IAI47_18610	0.36	-2.0
3,967,373	-		IAI47_18610	0.36	-1.8
3,967,399	+		IAI47_18610	0.37	-1.2
3,967,399	+		IAI47_18610	0.37	-1.3
3,967,400	-		IAI47_18610	0.37	-1.7
3,967,400	-		IAI47_18610	0.37	-0.3
3,967,400	-		IAI47_18610	0.37	+0.5
3,967,400	-		IAI47_18610	0.37	-0.6
3,967,406	-		IAI47_18610	0.37	+0.4
3,967,579	+		IAI47_18610	0.43	+0.1
3,967,579	+		IAI47_18610	0.43	+0.0
3,967,579	+		IAI47_18610	0.43	+1.9
3,967,580	-		IAI47_18610	0.43	-1.1
3,967,580	-		IAI47_18610	0.43	+4.1
3,967,601	+		IAI47_18610	0.44	+1.2
3,967,601	+		IAI47_18610	0.44	+1.6
3,967,601	+		IAI47_18610	0.44	-1.6
3,967,618	+		IAI47_18610	0.44	+0.1
3,967,618	+		IAI47_18610	0.44	+0.2
3,967,619	-		IAI47_18610	0.44	+0.1
3,967,638	+		IAI47_18610	0.45	-1.5
3,967,638	+		IAI47_18610	0.45	+1.1
3,967,638	+		IAI47_18610	0.45	-1.2
3,967,638	+		IAI47_18610	0.45	-1.0
3,967,639	-		IAI47_18610	0.45	+0.9
3,967,639	-		IAI47_18610	0.45	+0.5
3,967,639	-		IAI47_18610	0.45	+0.7
3,967,639	-		IAI47_18610	0.45	+0.1
3,967,664	+		IAI47_18610	0.46	+1.1
3,967,664	+		IAI47_18610	0.46	-0.1
3,967,664	+		IAI47_18610	0.46	-0.8
3,967,665	-		IAI47_18610	0.46	-1.2
3,967,774	-		IAI47_18610	0.50	-0.9
3,967,819	+		IAI47_18610	0.51	-0.2
3,967,820	-		IAI47_18610	0.51	-0.2
3,967,820	-		IAI47_18610	0.51	+0.1
3,967,820	-		IAI47_18610	0.51	-2.4
3,967,873	+		IAI47_18610	0.53	-0.2
3,967,901	+		IAI47_18610	0.54	-2.0
3,967,901	+		IAI47_18610	0.54	+0.8
3,967,901	+		IAI47_18610	0.54	-0.3
3,967,902	-		IAI47_18610	0.54	-2.3
3,967,902	-		IAI47_18610	0.54	+0.3
3,967,993	+		IAI47_18610	0.57	-0.9
3,967,994	-		IAI47_18610	0.57	-0.5
3,967,994	-		IAI47_18610	0.57	+0.9
3,967,994	-		IAI47_18610	0.57	-1.1
3,968,014	+		IAI47_18610	0.58	+0.7
3,968,015	-		IAI47_18610	0.58	+0.3
3,968,075	-		IAI47_18610	0.60	+0.2
3,968,080	+		IAI47_18610	0.60	-2.3
3,968,081	-		IAI47_18610	0.60	-0.2
3,968,081	-		IAI47_18610	0.60	-0.1
3,968,081	-		IAI47_18610	0.60	+1.2
3,968,083	+		IAI47_18610	0.60	+0.4
3,968,083	+		IAI47_18610	0.60	-0.6
3,968,083	+		IAI47_18610	0.60	-2.5
3,968,083	+		IAI47_18610	0.60	+3.8
3,968,084	-		IAI47_18610	0.60	-0.6
3,968,084	-		IAI47_18610	0.60	-2.0
3,968,084	-				-0.3
3,968,136	+		IAI47_18610	0.62	-0.7
3,968,137	-		IAI47_18610	0.62	-1.2
3,968,137	-		IAI47_18610	0.62	-0.3
3,968,182	+		IAI47_18610	0.64	-1.1
3,968,241	+		IAI47_18610	0.66	+1.2
3,968,241	+		IAI47_18610	0.66	-0.7
3,968,242	-		IAI47_18610	0.66	+0.7
3,968,242	-		IAI47_18610	0.66	+0.1
3,968,320	+		IAI47_18610	0.68	+0.4
3,968,320	+		IAI47_18610	0.68	+0.3
3,968,320	+		IAI47_18610	0.68	+1.9
3,968,320	+		IAI47_18610	0.68	+0.4
3,968,321	-		IAI47_18610	0.68	+0.3
3,968,321	-		IAI47_18610	0.68	-2.5
3,968,321	-		IAI47_18610	0.68	-2.8
3,968,321	-		IAI47_18610	0.68	+0.3
3,968,321	-		IAI47_18610	0.68	+1.0
3,968,321	-		IAI47_18610	0.68	+1.7
3,968,321	-		IAI47_18610	0.68	-2.7
3,968,377	+		IAI47_18610	0.70	-1.7
3,968,378	-		IAI47_18610	0.70	+1.2
3,968,401	+		IAI47_18610	0.71	-3.2
3,968,402	-		IAI47_18610	0.71	-1.0
3,968,420	+		IAI47_18610	0.72	-1.6
3,968,420	+		IAI47_18610	0.72	-0.7
3,968,420	+		IAI47_18610	0.72	-2.0
3,968,420	+		IAI47_18610	0.72	-0.3
3,968,421	-		IAI47_18610	0.72	+0.1
3,968,421	-		IAI47_18610	0.72	-3.0
3,968,440	+		IAI47_18610	0.72	-0.7
3,968,440	+		IAI47_18610	0.72	-2.0
3,968,440	+		IAI47_18610	0.72	-1.2
3,968,440	+		IAI47_18610	0.72	+1.4
3,968,440	+		IAI47_18610	0.72	+1.0
3,968,440	+		IAI47_18610	0.72	-3.5
3,968,441	-		IAI47_18610	0.72	-0.5
3,968,441	-		IAI47_18610	0.72	-3.3
3,968,509	+		IAI47_18610	0.75	+0.1
3,968,559	+		IAI47_18610	0.77	-2.3
3,968,734	+		IAI47_18610	0.83	-0.1
3,968,734	+		IAI47_18610	0.83	+1.3
3,968,734	+		IAI47_18610	0.83	-0.1
3,968,734	+		IAI47_18610	0.83	-0.7
3,968,734	+		IAI47_18610	0.83	+3.2
3,968,734	+		IAI47_18610	0.83	+1.0
3,968,735	-		IAI47_18610	0.83	+1.1
3,968,735	-		IAI47_18610	0.83	+0.2
3,968,736	-		IAI47_18610	0.83	-0.4
3,968,751	+		IAI47_18610	0.83	+0.1
3,968,751	+		IAI47_18610	0.83	+0.6
3,968,751	+		IAI47_18610	0.83	-0.3
3,968,751	+		IAI47_18610	0.83	-0.9
3,968,751	+		IAI47_18610	0.83	+1.0
3,968,751	+		IAI47_18610	0.83	+0.3
3,968,751	+		IAI47_18610	0.83	+0.7
3,968,751	+		IAI47_18610	0.83	-2.0
3,968,751	+		IAI47_18610	0.83	-1.1
3,968,751	+		IAI47_18610	0.83	+0.6
3,968,751	+		IAI47_18610	0.83	-0.4
3,968,751	+		IAI47_18610	0.83	-1.2
3,968,751	+		IAI47_18610	0.83	-1.8
3,968,752	-		IAI47_18610	0.83	-0.8
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