Strain Fitness in Pantoea sp. MT58 around IAI47_16485

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,491,728	+		IAI47_16480	0.12	-0.9
3,491,783	-		IAI47_16480	0.20	-1.7
3,491,783	-		IAI47_16480	0.20	-2.5
3,491,872	+		IAI47_16480	0.33	-1.6
3,491,872	+		IAI47_16480	0.33	+0.9
3,491,873	-		IAI47_16480	0.34	-1.1
3,491,873	-		IAI47_16480	0.34	+0.9
3,491,873	-		IAI47_16480	0.34	-0.9
3,491,873	-		IAI47_16480	0.34	+0.2
3,491,893	+		IAI47_16480	0.37	-1.9
3,491,893	+		IAI47_16480	0.37	-1.4
3,491,893	+		IAI47_16480	0.37	+1.1
3,491,893	+		IAI47_16480	0.37	-0.4
3,491,893	+		IAI47_16480	0.37	-0.3
3,491,893	+		IAI47_16480	0.37	-1.8
3,491,894	-		IAI47_16480	0.37	+0.2
3,491,894	-		IAI47_16480	0.37	-0.0
3,491,894	-		IAI47_16480	0.37	+1.2
3,491,896	-		IAI47_16480	0.37	+2.2
3,491,917	-		IAI47_16480	0.40	+0.4
3,492,249	+		IAI47_16480	0.90	+2.0
3,492,249	+		IAI47_16480	0.90	-0.8
3,492,249	+		IAI47_16480	0.90	-1.3
3,492,250	-				+1.9
3,492,250	-				+0.2
3,492,250	-				+0.1
3,492,293	+				-1.4
3,492,293	+				-0.6
3,492,295	+				-0.6
3,492,295	+				+0.4
3,492,295	+				+0.2
3,492,295	+				-0.9
3,492,295	+				+1.1
3,492,296	-				-0.8
3,492,296	-				-1.3
3,492,342	+				-0.7
3,492,343	-				+0.2
3,492,368	+				+0.2
3,492,368	+				+1.2
3,492,368	+				-0.9
3,492,369	-				-2.4
3,492,392	-				+2.3
3,492,412	+				+0.4
3,492,412	+				+2.9
3,492,435	+				-2.1
3,492,436	-				-2.6
3,492,474	-				-0.2
3,492,485	+				-0.1
3,492,486	-				-1.9
3,492,486	-				+1.0
3,492,486	-				-0.6
3,492,490	+				+1.3
3,492,568	-				+1.9
3,492,625	-				-0.3
3,492,631	+				+2.3
3,492,631	+				-0.9
3,492,631	+				-0.8
3,492,632	-				+0.9
3,492,632	-				-2.1
3,492,632	-				+1.5
3,492,632	-				+3.8
3,492,653	+				+0.7
3,492,653	+				+2.0
3,492,660	+				+1.6
3,492,660	+				+0.6
3,492,660	+				-0.0
3,492,660	+				+4.0
3,492,661	-				+0.5
3,492,736	-				+0.3
3,492,736	-				+1.0
3,492,747	+				+0.7
3,492,747	+				+1.3
3,492,747	+				+3.0
3,492,747	+				-0.9
3,492,747	+				+0.4
3,492,748	-				-1.2
3,492,748	-				+0.6
3,492,748	-				+1.8
3,492,748	-				-0.6
3,492,748	-				-2.3
3,492,756	+				-0.2
3,492,756	+				+2.3
3,492,763	+				-2.2
3,492,764	-				-0.2
3,492,781	-				-0.1
3,492,815	+				-1.7
3,492,838	-				+0.8
3,492,838	-				-0.7
3,492,838	-				-0.8
3,492,867	+		IAI47_16485	0.11	-0.8
3,492,867	+		IAI47_16485	0.11	-2.0
3,492,867	+		IAI47_16485	0.11	+1.7
3,492,868	-		IAI47_16485	0.11	-2.3
3,492,868	-		IAI47_16485	0.11	-1.0
3,492,922	+		IAI47_16485	0.15	-0.0
3,492,927	-		IAI47_16485	0.15	+3.4
3,492,992	+		IAI47_16485	0.19	+2.0
3,492,993	-		IAI47_16485	0.19	-1.5
3,493,005	-		IAI47_16485	0.20	+0.3
3,493,005	-		IAI47_16485	0.20	-1.1
3,493,007	+		IAI47_16485	0.20	-1.3
3,493,008	-		IAI47_16485	0.20	+0.1
3,493,051	-		IAI47_16485	0.23	+0.0
3,493,054	+		IAI47_16485	0.23	-0.7
3,493,055	-		IAI47_16485	0.23	+0.2
3,493,060	-		IAI47_16485	0.24	-0.4
3,493,060	-		IAI47_16485	0.24	+1.0
3,493,088	+		IAI47_16485	0.26	-0.0
3,493,089	-		IAI47_16485	0.26	+0.7
3,493,156	-		IAI47_16485	0.30	-1.5
3,493,159	-		IAI47_16485	0.30	+1.2
3,493,159	-		IAI47_16485	0.30	-0.6
3,493,159	-		IAI47_16485	0.30	+0.4
3,493,205	+		IAI47_16485	0.33	+0.1
3,493,205	+		IAI47_16485	0.33	-1.7
3,493,205	+		IAI47_16485	0.33	-0.4
3,493,206	-		IAI47_16485	0.33	-1.4
3,493,216	+		IAI47_16485	0.34	+0.1
3,493,216	+		IAI47_16485	0.34	-0.2
3,493,216	+		IAI47_16485	0.34	-1.3
3,493,217	-		IAI47_16485	0.34	+0.4
3,493,217	-		IAI47_16485	0.34	-0.6
3,493,217	-		IAI47_16485	0.34	-1.6
3,493,217	-		IAI47_16485	0.34	-1.1
3,493,218	+		IAI47_16485	0.34	+0.3
3,493,218	+		IAI47_16485	0.34	+1.4
3,493,326	+		IAI47_16485	0.41	-0.5
3,493,345	+		IAI47_16485	0.43	+0.5
3,493,346	-		IAI47_16485	0.43	-0.4
3,493,346	-		IAI47_16485	0.43	-2.1
3,493,347	+		IAI47_16485	0.43	-0.1
3,493,347	+		IAI47_16485	0.43	+0.7
3,493,347	+		IAI47_16485	0.43	-1.6
3,493,347	+		IAI47_16485	0.43	+0.2
3,493,347	+		IAI47_16485	0.43	+0.4
3,493,348	-		IAI47_16485	0.43	+1.8
3,493,348	-		IAI47_16485	0.43	+0.3
3,493,348	-		IAI47_16485	0.43	+0.2
3,493,348	-		IAI47_16485	0.43	+2.2
3,493,363	+		IAI47_16485	0.44	-0.4
3,493,364	-		IAI47_16485	0.44	-3.2
3,493,366	+		IAI47_16485	0.44	-1.1
3,493,366	+		IAI47_16485	0.44	+0.1
3,493,366	+		IAI47_16485	0.44	+0.6
3,493,366	+		IAI47_16485	0.44	+0.2
3,493,366	+		IAI47_16485	0.44	-1.4
3,493,367	-		IAI47_16485	0.44	+3.5
3,493,367	-		IAI47_16485	0.44	-1.9
3,493,371	+		IAI47_16485	0.44	+1.3
3,493,371	+		IAI47_16485	0.44	-0.1
3,493,371	+		IAI47_16485	0.44	+0.1
3,493,372	-		IAI47_16485	0.44	+0.6
3,493,372	-		IAI47_16485	0.44	-2.6
3,493,372	-		IAI47_16485	0.44	+1.8
3,493,500	-		IAI47_16485	0.53	-2.2
3,493,500	-		IAI47_16485	0.53	+1.3
3,493,521	+		IAI47_16485	0.54	-2.5
3,493,522	-		IAI47_16485	0.54	+3.1
3,493,522	-		IAI47_16485	0.54	+0.4
3,493,522	-		IAI47_16485	0.54	+0.7
3,493,522	-		IAI47_16485	0.54	-0.8
3,493,524	+		IAI47_16485	0.54	-1.2
3,493,524	+		IAI47_16485	0.54	+2.5
3,493,525	-		IAI47_16485	0.54	-0.9
3,493,525	-		IAI47_16485	0.54	+1.4
3,493,525	-		IAI47_16485	0.54	+0.2
3,493,525	-		IAI47_16485	0.54	-0.1
3,493,525	-		IAI47_16485	0.54	+0.8
3,493,554	+		IAI47_16485	0.56	+1.1
3,493,554	+		IAI47_16485	0.56	+0.6
3,493,554	+		IAI47_16485	0.56	-0.4
3,493,554	+		IAI47_16485	0.56	+0.6
3,493,554	+		IAI47_16485	0.56	-1.6
3,493,555	-		IAI47_16485	0.56	-1.8
3,493,555	-		IAI47_16485	0.56	+0.5
3,493,555	-		IAI47_16485	0.56	+0.0
3,493,555	-		IAI47_16485	0.56	+0.4
3,493,555	-		IAI47_16485	0.56	+1.7
3,493,555	-		IAI47_16485	0.56	+0.0
3,493,558	+		IAI47_16485	0.57	+2.8
3,493,558	+		IAI47_16485	0.57	+0.1
3,493,558	+		IAI47_16485	0.57	-1.0
3,493,558	+		IAI47_16485	0.57	+0.2
3,493,558	+		IAI47_16485	0.57	-2.9
3,493,558	+		IAI47_16485	0.57	+2.2
3,493,558	+		IAI47_16485	0.57	+1.1
3,493,558	+		IAI47_16485	0.57	+0.9
3,493,558	+		IAI47_16485	0.57	+1.8
3,493,558	+		IAI47_16485	0.57	+0.7
3,493,558	+		IAI47_16485	0.57	+2.1
3,493,559	-		IAI47_16485	0.57	+0.5
3,493,559	-		IAI47_16485	0.57	-0.1
3,493,559	-		IAI47_16485	0.57	+1.4
3,493,559	-		IAI47_16485	0.57	+0.2
3,493,559	-		IAI47_16485	0.57	-2.5
3,493,559	-		IAI47_16485	0.57	+0.7
3,493,564	+		IAI47_16485	0.57	+0.5
3,493,564	+		IAI47_16485	0.57	-0.6
3,493,564	+		IAI47_16485	0.57	+0.3
3,493,564	+		IAI47_16485	0.57	+1.7
3,493,564	+		IAI47_16485	0.57	+1.2
3,493,564	+		IAI47_16485	0.57	+1.7
3,493,564	+		IAI47_16485	0.57	-1.1
3,493,564	+		IAI47_16485	0.57	-0.7
3,493,564	+		IAI47_16485	0.57	+0.3
3,493,620	-		IAI47_16485	0.61	-0.5
3,493,620	-		IAI47_16485	0.61	+1.1
3,493,731	+		IAI47_16485	0.68	+1.1
3,493,731	+		IAI47_16485	0.68	-0.4
3,493,731	+		IAI47_16485	0.68	-0.6
3,493,732	-		IAI47_16485	0.68	-1.3
3,493,732	-		IAI47_16485	0.68	-0.0
3,493,732	-		IAI47_16485	0.68	+1.2
3,493,732	-		IAI47_16485	0.68	-0.4
3,493,732	-		IAI47_16485	0.68	-1.1
3,493,732	-		IAI47_16485	0.68	-0.3
3,493,759	+		IAI47_16485	0.70	-2.2
3,493,759	+		IAI47_16485	0.70	-1.6
3,493,774	-		IAI47_16485	0.71	-2.0
3,493,861	+		IAI47_16485	0.77	-1.0
3,493,861	+		IAI47_16485	0.77	-1.9
3,493,861	+		IAI47_16485	0.77	-2.3
3,493,861	+		IAI47_16485	0.77	+0.6
3,493,861	+		IAI47_16485	0.77	+1.4
3,493,862	-		IAI47_16485	0.77	+0.2
3,493,897	+		IAI47_16485	0.79	-1.4
3,493,897	+		IAI47_16485	0.79	+0.2
3,493,897	+		IAI47_16485	0.79	-0.1
3,493,897	+		IAI47_16485	0.79	+1.5
3,493,898	-		IAI47_16485	0.79	+1.6
3,493,912	-		IAI47_16485	0.80	-2.9
3,493,912	-		IAI47_16485	0.80	-0.8
3,493,943	+		IAI47_16485	0.82	-3.4
3,493,943	+		IAI47_16485	0.82	-2.0
3,493,944	-		IAI47_16485	0.82	-1.7
3,493,952	+		IAI47_16485	0.83	-1.2
3,494,058	+		IAI47_16485	0.90	+0.8
3,494,140	+				-0.7
3,494,140	+				+1.0
3,494,170	-				+1.8
3,494,209	-				+2.0
3,494,212	+				+0.9
3,494,213	-				-0.8
3,494,226	+				-1.9
3,494,226	+				+0.8
3,494,227	-				-1.4
3,494,227	-				-0.6
3,494,227	-				+0.2
3,494,250	+				-1.9
3,494,251	-				-0.4
3,494,313	+		IAI47_16490	0.18	-0.8
3,494,386	+		IAI47_16490	0.33	-1.8
3,494,386	+		IAI47_16490	0.33	-2.0
3,494,386	+		IAI47_16490	0.33	+0.0
3,494,386	+		IAI47_16490	0.33	+0.4
3,494,386	+		IAI47_16490	0.33	-1.0
3,494,387	-		IAI47_16490	0.33	-1.4
3,494,387	-		IAI47_16490	0.33	+1.3
3,494,387	-		IAI47_16490	0.33	+0.0
3,494,402	+		IAI47_16490	0.36	-2.1
3,494,445	+		IAI47_16490	0.45	-0.9
3,494,568	+		IAI47_16490	0.71	-0.2
3,494,603	+		IAI47_16490	0.79	+0.0
3,494,603	+		IAI47_16490	0.79	-0.9
3,494,642	+		IAI47_16490	0.87	-2.1
3,494,643	-		IAI47_16490	0.87	+0.9
3,494,643	-		IAI47_16490	0.87	+2.2
3,494,678	+				-1.2
3,494,679	-				+1.0
3,494,705	+				+0.2
3,494,719	+				-0.3
3,494,719	+				+1.3
3,494,720	-				+2.2
3,494,720	-				-0.7
3,494,737	-				+2.1
3,494,737	-				+3.2
3,494,745	-				-1.8
3,494,756	+				-0.8
3,494,757	-				-2.7
3,494,757	-				+1.0
3,494,811	+				-0.2
3,494,812	-				+1.2
3,494,820	+				-0.3
3,494,841	+				+0.4
3,494,842	-				-0.6
3,494,842	-				+1.5
3,494,861	-				-1.1
3,494,861	-				+1.3
3,494,874	+				+0.7
3,494,912	+				-0.9
3,494,915	+				+3.0
3,494,949	+				+1.9
3,494,968	-		IAI47_16495	0.11	+1.4
3,494,990	+		IAI47_16495	0.12	-2.3
3,494,991	-		IAI47_16495	0.13	-0.7
3,494,991	-		IAI47_16495	0.13	+0.0
3,495,090	-		IAI47_16495	0.20	-0.2
3,495,214	+		IAI47_16495	0.28	+0.9
3,495,214	+		IAI47_16495	0.28	+1.1
3,495,214	+		IAI47_16495	0.28	-1.4
3,495,214	+		IAI47_16495	0.28	+0.5