Strain Fitness in Pantoea sp. MT58 around IAI47_14185

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,996,320	+		IAI47_14180	0.14	+0.0
2,996,320	+		IAI47_14180	0.14	+1.3
2,996,320	+		IAI47_14180	0.14	+0.4
2,996,320	+		IAI47_14180	0.14	-0.8
2,996,320	+		IAI47_14180	0.14	+1.0
2,996,320	+		IAI47_14180	0.14	-0.5
2,996,320	+		IAI47_14180	0.14	+0.0
2,996,320	+		IAI47_14180	0.14	+1.1
2,996,321	-		IAI47_14180	0.14	-1.5
2,996,321	-		IAI47_14180	0.14	-0.1
2,996,321	-		IAI47_14180	0.14	-1.8
2,996,321	-		IAI47_14180	0.14	+0.2
2,996,321	-		IAI47_14180	0.14	-1.1
2,996,324	+		IAI47_14180	0.14	+0.4
2,996,325	-		IAI47_14180	0.15	-0.7
2,996,325	-		IAI47_14180	0.15	-2.5
2,996,325	-		IAI47_14180	0.15	-0.8
2,996,325	-		IAI47_14180	0.15	-0.7
2,996,367	+		IAI47_14180	0.19	-0.4
2,996,367	+		IAI47_14180	0.19	-1.4
2,996,394	+		IAI47_14180	0.21	-1.7
2,996,395	-		IAI47_14180	0.21	-1.7
2,996,395	-		IAI47_14180	0.21	+0.4
2,996,403	+		IAI47_14180	0.22	-0.7
2,996,414	+		IAI47_14180	0.23	+0.1
2,996,415	-		IAI47_14180	0.23	-1.1
2,996,415	-		IAI47_14180	0.23	-0.3
2,996,455	-		IAI47_14180	0.27	-0.2
2,996,460	+		IAI47_14180	0.28	+0.9
2,996,460	+		IAI47_14180	0.28	+1.1
2,996,461	-		IAI47_14180	0.28	-0.0
2,996,461	-		IAI47_14180	0.28	+0.6
2,996,523	+		IAI47_14180	0.34	+1.8
2,996,524	-		IAI47_14180	0.34	-0.8
2,996,583	+		IAI47_14180	0.40	+1.0
2,996,583	+		IAI47_14180	0.40	-1.8
2,996,584	-		IAI47_14180	0.40	+0.5
2,996,584	-		IAI47_14180	0.40	+1.2
2,996,584	-		IAI47_14180	0.40	-1.2
2,996,607	+		IAI47_14180	0.42	-2.2
2,996,607	+		IAI47_14180	0.42	-1.0
2,996,607	+		IAI47_14180	0.42	+0.0
2,996,607	+		IAI47_14180	0.42	-2.3
2,996,608	-		IAI47_14180	0.42	-1.4
2,996,608	-		IAI47_14180	0.42	-2.0
2,996,608	-		IAI47_14180	0.42	-0.9
2,996,625	+		IAI47_14180	0.44	-1.2
2,996,625	+		IAI47_14180	0.44	-0.1
2,996,626	-		IAI47_14180	0.44	+0.5
2,996,626	-		IAI47_14180	0.44	-1.5
2,996,637	+		IAI47_14180	0.45	+0.3
2,996,649	+		IAI47_14180	0.46	-2.9
2,996,649	+		IAI47_14180	0.46	-1.5
2,996,649	+		IAI47_14180	0.46	+0.6
2,996,649	+		IAI47_14180	0.46	+0.5
2,996,649	+		IAI47_14180	0.46	-0.8
2,996,650	-		IAI47_14180	0.46	-1.6
2,996,650	-		IAI47_14180	0.46	-0.4
2,996,650	-		IAI47_14180	0.46	+1.8
2,996,650	-		IAI47_14180	0.46	-0.5
2,996,650	-		IAI47_14180	0.46	-0.6
2,996,650	-		IAI47_14180	0.46	+0.2
2,996,650	-		IAI47_14180	0.46	+0.7
2,996,653	+		IAI47_14180	0.47	-0.5
2,996,654	-		IAI47_14180	0.47	-1.9
2,996,741	-		IAI47_14180	0.55	+0.6
2,996,741	-		IAI47_14180	0.55	-1.0
2,996,754	+		IAI47_14180	0.57	+0.1
2,996,834	+		IAI47_14180	0.64	-0.7
2,996,834	+		IAI47_14180	0.64	-3.0
2,996,834	+		IAI47_14180	0.64	-0.1
2,996,835	-		IAI47_14180	0.65	-0.7
2,996,835	-		IAI47_14180	0.65	+1.6
2,996,835	-		IAI47_14180	0.65	+1.3
2,996,849	-		IAI47_14180	0.66	-0.3
2,996,860	+		IAI47_14180	0.67	+0.1
2,996,860	+		IAI47_14180	0.67	-2.5
2,996,860	+		IAI47_14180	0.67	+0.7
2,996,860	+		IAI47_14180	0.67	-1.8
2,996,860	+		IAI47_14180	0.67	-0.3
2,996,910	+		IAI47_14180	0.72	+0.2
2,996,911	-		IAI47_14180	0.72	-2.0
2,996,911	-		IAI47_14180	0.72	-1.0
2,996,911	-		IAI47_14180	0.72	-1.3
2,996,943	+		IAI47_14180	0.75	-1.4
2,996,943	+		IAI47_14180	0.75	+0.2
2,996,943	+		IAI47_14180	0.75	+0.8
2,996,943	+		IAI47_14180	0.75	-2.0
2,996,944	-		IAI47_14180	0.75	-0.0
2,996,944	-		IAI47_14180	0.75	-0.8
2,997,036	+		IAI47_14180	0.84	-2.4
2,997,036	+		IAI47_14180	0.84	+1.9
2,997,036	+		IAI47_14180	0.84	-1.5
2,997,036	+		IAI47_14180	0.84	-0.3
2,997,037	-		IAI47_14180	0.84	-0.5
2,997,037	-		IAI47_14180	0.84	+0.6
2,997,037	-		IAI47_14180	0.84	+1.8
2,997,037	-		IAI47_14180	0.84	+0.2
2,997,037	-		IAI47_14180	0.84	+0.3
2,997,038	-		IAI47_14180	0.84	+1.4
2,997,047	+		IAI47_14180	0.85	-1.7
2,997,048	-		IAI47_14180	0.85	-1.8
2,997,048	-		IAI47_14180	0.85	-0.9
2,997,048	-		IAI47_14180	0.85	-2.9
2,997,048	-		IAI47_14180	0.85	-0.2
2,997,048	-		IAI47_14180	0.85	-2.4
2,997,103	+				-0.9
2,997,262	+				+0.7
2,997,262	+				-0.2
2,997,281	+				-1.6
2,997,282	-				-0.6
2,997,282	-				-2.8
2,997,282	-				+0.3
2,997,352	+				-0.6
2,997,353	-				-0.5
2,997,452	+		IAI47_14185	0.26	-1.1
2,997,452	+		IAI47_14185	0.26	-0.5
2,997,452	+		IAI47_14185	0.26	+0.2
2,997,452	+		IAI47_14185	0.26	+0.1
2,997,453	-		IAI47_14185	0.26	-0.0
2,997,453	-		IAI47_14185	0.26	-1.0
2,997,453	-		IAI47_14185	0.26	-0.3
2,997,453	-		IAI47_14185	0.26	+0.5
2,997,453	-		IAI47_14185	0.26	+0.7
2,997,453	-		IAI47_14185	0.26	-0.7
2,997,453	-		IAI47_14185	0.26	-2.9
2,997,547	+		IAI47_14185	0.42	+1.1
2,997,547	+		IAI47_14185	0.42	+0.5
2,997,547	+		IAI47_14185	0.42	-0.1
2,997,548	-		IAI47_14185	0.42	+0.2
2,997,614	-		IAI47_14185	0.53	-0.1
2,997,669	+		IAI47_14185	0.62	+0.3
2,997,670	-		IAI47_14185	0.62	+0.1
2,997,670	-		IAI47_14185	0.62	+0.9
2,997,765	+		IAI47_14185	0.78	+2.0
2,997,766	-		IAI47_14185	0.78	+1.4
2,997,794	+		IAI47_14185	0.83	+0.3
2,997,795	-		IAI47_14185	0.83	+0.5
2,997,817	+		IAI47_14185	0.87	-1.1
2,997,817	+		IAI47_14185	0.87	-0.9
2,997,817	+		IAI47_14185	0.87	+1.3
2,997,817	+		IAI47_14185	0.87	+0.9
2,997,817	+		IAI47_14185	0.87	-0.1
2,997,818	-		IAI47_14185	0.87	-0.8
2,997,818	-		IAI47_14185	0.87	+0.2
2,997,818	-		IAI47_14185	0.87	-0.5
2,997,818	-		IAI47_14185	0.87	+1.8
2,997,818	-		IAI47_14185	0.87	-1.3
2,997,818	-		IAI47_14185	0.87	+0.5
2,997,818	-		IAI47_14185	0.87	-2.3
2,997,818	-		IAI47_14185	0.87	+0.2
2,997,818	-		IAI47_14185	0.87	-1.7
2,997,837	-				-1.8
2,997,837	-				+1.6
2,997,850	+				+0.0
2,997,850	+				+1.0
2,997,895	+				+0.2
2,997,895	+				-0.5
2,997,896	-				+0.6
2,997,912	-				+1.0
2,997,942	-				+0.3
2,997,965	-				-1.5
2,997,965	-				-0.5
2,997,969	+				-0.4
2,997,969	+				-1.2
2,997,970	-				+1.0
2,997,970	-				-1.7
2,997,970	-				+0.3
2,997,970	-				+0.1
2,997,970	-				+0.8
2,997,970	-				+1.4
2,997,970	-				+1.9
2,997,982	-				+0.5
2,998,007	-				-0.9
2,998,007	-				-2.3
2,998,015	+				+2.2
2,998,016	-				+0.7
2,998,073	+				+0.6
2,998,073	+				+0.5
2,998,074	-				-1.9
2,998,108	+				-0.9
2,998,109	-				-1.3
2,998,109	-				-2.3
2,998,120	+				-1.5
2,998,146	-				+1.4
2,998,150	-				+0.7
2,998,182	+				+3.1
2,998,186	+				-2.2
2,998,186	+				+1.4
2,998,186	+				-0.1
2,998,220	-				-1.2
2,998,240	+				+1.2
2,998,254	-				+1.6
2,998,295	+		IAI47_14190	0.19	-1.4
2,998,296	-		IAI47_14190	0.20	-2.0
2,998,392	+		IAI47_14190	0.60	-0.9
2,998,392	+		IAI47_14190	0.60	-1.6
2,998,393	-		IAI47_14190	0.61	-1.4
2,998,393	-		IAI47_14190	0.61	+0.4
2,998,444	-		IAI47_14190	0.82	-1.3
2,998,479	+				-0.4
2,998,483	+				-1.0
2,998,515	-				-0.1
2,998,542	-				-1.2
2,998,593	+				-0.7
2,998,593	+				-0.0
2,998,629	+				-1.0
2,998,629	+				+1.0
2,998,630	-				+0.1
2,998,631	+				+0.7
2,998,632	-				+0.4
2,998,632	-				+2.1
2,998,644	+				+2.9
2,998,645	-				-1.3
2,998,646	+				+0.3
2,998,687	+				-0.4
2,998,688	-				+2.1
2,998,688	-				+0.5
2,998,688	-				+3.0
2,998,688	-				-1.3
2,998,717	+		IAI47_14195	0.11	-2.8
2,998,718	-		IAI47_14195	0.11	-0.7
2,998,718	-		IAI47_14195	0.11	-0.8
2,998,718	-		IAI47_14195	0.11	-0.1
2,998,718	-		IAI47_14195	0.11	+0.3
2,998,764	-		IAI47_14195	0.19	+0.2
2,998,796	+		IAI47_14195	0.25	-1.0
2,998,796	+		IAI47_14195	0.25	+1.3
2,998,796	+		IAI47_14195	0.25	-2.6
2,998,796	+		IAI47_14195	0.25	-0.7
2,998,797	-		IAI47_14195	0.25	+1.7
2,998,797	-		IAI47_14195	0.25	-0.3
2,998,797	-		IAI47_14195	0.25	+1.4
2,998,843	+		IAI47_14195	0.33	+0.9
2,998,843	+		IAI47_14195	0.33	-0.6
2,998,843	+		IAI47_14195	0.33	-0.3
2,998,843	+		IAI47_14195	0.33	+0.6
2,998,844	-		IAI47_14195	0.33	-0.9
2,998,844	-		IAI47_14195	0.33	-1.5
2,998,844	-		IAI47_14195	0.33	-1.4
2,998,855	+		IAI47_14195	0.35	-1.8
2,998,855	+		IAI47_14195	0.35	+2.0
2,998,855	+		IAI47_14195	0.35	-0.2
2,998,856	-		IAI47_14195	0.35	+1.5
2,998,856	-		IAI47_14195	0.35	+0.4
2,998,856	-		IAI47_14195	0.35	+0.4
2,998,887	-		IAI47_14195	0.40	-0.7