Strain Fitness in Pantoea sp. MT58 around IAI47_08060

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,701,901	+		IAI47_08055	0.72	-0.6
1,701,928	+		IAI47_08055	0.78	-0.6
1,701,928	+		IAI47_08055	0.78	+0.7
1,701,928	+		IAI47_08055	0.78	+1.5
1,701,929	-		IAI47_08055	0.78	+0.8
1,701,929	-		IAI47_08055	0.78	-0.3
1,701,929	-		IAI47_08055	0.78	-0.7
1,701,950	+		IAI47_08055	0.83	-0.9
1,701,998	+				+2.3
1,701,998	+				-0.0
1,701,998	+				-1.3
1,701,999	-				+1.4
1,701,999	-				-1.1
1,702,009	+				+3.4
1,702,009	+				+1.0
1,702,009	+				+1.2
1,702,009	+				-0.7
1,702,010	-				-0.9
1,702,010	-				+0.2
1,702,010	-				-0.2
1,702,022	-				+0.6
1,702,028	+				+0.6
1,702,029	-				-0.6
1,702,033	+				+1.1
1,702,033	+				+0.2
1,702,033	+				+0.1
1,702,034	-				-1.7
1,702,047	+				+1.4
1,702,056	+				+0.1
1,702,056	+				-2.6
1,702,061	-				-1.0
1,702,139	+				-0.6
1,702,140	-				+0.5
1,702,155	+				+0.7
1,702,156	-				+0.2
1,702,187	+				-1.1
1,702,187	+				+1.3
1,702,188	-				-0.8
1,702,188	-				+1.2
1,702,188	-				+2.7
1,702,201	+				-0.3
1,702,202	-				-0.4
1,702,202	-				-1.7
1,702,218	+				-0.2
1,702,218	+				+0.5
1,702,289	+				+2.1
1,702,301	+				+0.9
1,702,331	+				+1.7
1,702,352	+				+1.3
1,702,352	+				-0.9
1,702,352	+				+0.2
1,702,352	+				+1.0
1,702,385	+				-0.4
1,702,395	-				-1.1
1,702,405	+				+1.3
1,702,406	-				-1.6
1,702,407	+				-0.9
1,702,407	+				-1.6
1,702,408	-				-0.3
1,702,416	+				+1.1
1,702,416	+				-0.1
1,702,416	+				+0.5
1,702,417	-				+2.2
1,702,433	+				-0.6
1,702,433	+				+0.1
1,702,434	-				-0.3
1,702,435	+				+0.1
1,702,435	+				-2.3
1,702,435	+				-0.9
1,702,435	+				-1.1
1,702,435	+				+0.2
1,702,435	+				+1.6
1,702,435	+				+1.3
1,702,436	-				+0.5
1,702,436	-				-0.6
1,702,436	-				+0.7
1,702,436	-				-0.6
1,702,436	-				-0.4
1,702,448	+				-0.1
1,702,474	-				-1.5
1,702,475	+				+0.9
1,702,501	-				+0.8
1,702,501	-				+2.6
1,702,577	+				+0.9
1,702,577	+				-1.4
1,702,578	-				+1.7
1,702,578	-				-1.5
1,702,578	-				-1.7
1,702,601	+				+0.1
1,702,601	+				-1.0
1,702,602	-				+3.2
1,702,602	-				-0.4
1,702,606	+				-0.6
1,702,606	+				-0.5
1,702,606	+				-0.5
1,702,606	+				-1.2
1,702,606	+				+0.4
1,702,606	+				+3.2
1,702,611	+				+1.4
1,702,611	+				+2.2
1,702,611	+				+1.4
1,702,611	+				+1.3
1,702,611	+				-0.3
1,702,611	+				-0.2
1,702,611	+				+0.5
1,702,611	+				-1.9
1,702,612	-				+1.2
1,702,612	-				+2.6
1,702,612	-				-1.5
1,702,612	-				-2.0
1,702,618	+				+1.3
1,702,651	-				-2.3
1,702,654	+				+1.8
1,702,654	+				-0.4
1,702,655	-				+1.3
1,702,665	+				+0.4
1,702,665	+				-1.2
1,702,665	+				-3.3
1,702,672	-				-1.3
1,702,698	+				+0.8
1,702,698	+				-2.5
1,702,699	-				-2.0
1,702,723	+				+0.2
1,702,723	+				+0.1
1,702,723	+				+2.1
1,702,725	+				+1.1
1,702,751	+				-1.0
1,702,751	+				-2.0
1,702,751	+				+0.9
1,702,751	+				-0.3
1,702,751	+				-1.5
1,702,751	+				+1.0
1,702,751	+				-1.2
1,702,751	+				-0.7
1,702,752	-				+1.1
1,702,752	-				-0.3
1,702,752	-				-1.3
1,702,752	-				-0.4
1,702,752	-				-0.5
1,702,752	-				-0.7
1,702,754	+				-1.3
1,702,754	+				+0.5
1,702,754	+				-1.7
1,702,755	-				+1.1
1,702,768	-				+0.7
1,702,768	-				-0.9
1,702,837	+				+1.9
1,702,837	+				-1.0
1,702,838	-				-1.2
1,702,838	-				+0.3
1,702,886	-				+1.3
1,702,913	+				-1.5
1,702,924	+				+0.3
1,702,924	+				+1.6
1,702,924	+				+0.0
1,702,925	-				+0.5
1,702,925	-				-0.1
1,702,928	+				-0.5
1,702,928	+				+0.5
1,702,928	+				+2.5
1,702,928	+				-0.9
1,702,928	+				-2.3
1,702,928	+				+3.5
1,702,928	+				+2.1
1,702,928	+				-0.6
1,702,928	+				-0.5
1,702,928	+				-1.2
1,702,929	-				-1.9
1,702,929	-				+0.8
1,702,929	-				+0.2
1,702,932	+				-1.9
1,702,932	+				-0.1
1,702,933	-				+0.6
1,702,933	-				+1.8
1,702,933	-				+0.1
1,702,998	-		IAI47_08060	0.15	+1.2
1,702,998	-		IAI47_08060	0.15	-1.0
1,702,998	-		IAI47_08060	0.15	-0.6
1,702,998	-		IAI47_08060	0.15	-0.5
1,703,027	+		IAI47_08060	0.18	+0.1
1,703,035	+		IAI47_08060	0.19	+1.1
1,703,035	+		IAI47_08060	0.19	+0.3
1,703,036	-		IAI47_08060	0.19	+1.4
1,703,036	-		IAI47_08060	0.19	+0.1
1,703,061	+		IAI47_08060	0.21	-0.7
1,703,062	-		IAI47_08060	0.21	+0.2
1,703,062	-		IAI47_08060	0.21	+1.7
1,703,092	+		IAI47_08060	0.24	-1.5
1,703,092	+		IAI47_08060	0.24	+2.0
1,703,092	+		IAI47_08060	0.24	-2.2
1,703,093	-		IAI47_08060	0.24	+2.9
1,703,093	-		IAI47_08060	0.24	+2.0
1,703,096	+		IAI47_08060	0.24	+0.1
1,703,096	+		IAI47_08060	0.24	-0.3
1,703,096	+		IAI47_08060	0.24	+1.7
1,703,096	+		IAI47_08060	0.24	-1.0
1,703,096	+		IAI47_08060	0.24	-0.1
1,703,097	-		IAI47_08060	0.24	+0.2
1,703,097	-		IAI47_08060	0.24	+0.8
1,703,097	-		IAI47_08060	0.24	+2.3
1,703,097	-		IAI47_08060	0.24	+0.8
1,703,098	+		IAI47_08060	0.24	+1.0
1,703,098	+		IAI47_08060	0.24	+0.9
1,703,098	+		IAI47_08060	0.24	-0.4
1,703,099	-		IAI47_08060	0.25	+0.7
1,703,099	-		IAI47_08060	0.25	+0.8
1,703,099	-		IAI47_08060	0.25	-1.6
1,703,099	-		IAI47_08060	0.25	+0.7
1,703,099	-		IAI47_08060	0.25	-0.1
1,703,143	+		IAI47_08060	0.29	+0.6
1,703,143	+		IAI47_08060	0.29	-0.5
1,703,143	+		IAI47_08060	0.29	-1.8
1,703,144	-		IAI47_08060	0.29	+1.7
1,703,144	-		IAI47_08060	0.29	-1.0
1,703,144	-		IAI47_08060	0.29	-0.1
1,703,144	-		IAI47_08060	0.29	+0.2
1,703,183	-		IAI47_08060	0.32	+0.6
1,703,205	+		IAI47_08060	0.34	-1.5
1,703,205	+		IAI47_08060	0.34	-0.1
1,703,205	+		IAI47_08060	0.34	-0.3
1,703,205	+		IAI47_08060	0.34	-0.4
1,703,206	-		IAI47_08060	0.34	-1.5
1,703,206	-		IAI47_08060	0.34	-0.5
1,703,206	-		IAI47_08060	0.34	-1.7
1,703,215	+		IAI47_08060	0.35	-2.1
1,703,271	+		IAI47_08060	0.40	-1.5
1,703,271	+				+0.1
1,703,271	+		IAI47_08060	0.40	+1.1
1,703,271	+		IAI47_08060	0.40	-1.7
1,703,271	+		IAI47_08060	0.40	-0.9
1,703,271	+		IAI47_08060	0.40	+1.0
1,703,271	+		IAI47_08060	0.40	+1.4
1,703,271	+		IAI47_08060	0.40	-0.3
1,703,272	-		IAI47_08060	0.40	-1.1
1,703,272	-		IAI47_08060	0.40	+0.3
1,703,272	-		IAI47_08060	0.40	+1.3
1,703,272	-		IAI47_08060	0.40	-2.1
1,703,272	-		IAI47_08060	0.40	+0.7
1,703,274	+		IAI47_08060	0.40	-0.5
1,703,274	+		IAI47_08060	0.40	+0.1
1,703,311	-		IAI47_08060	0.44	-0.4
1,703,312	+		IAI47_08060	0.44	-0.6
1,703,321	+		IAI47_08060	0.45	+0.7
1,703,321	+		IAI47_08060	0.45	+4.0
1,703,321	+		IAI47_08060	0.45	+2.3
1,703,329	+		IAI47_08060	0.45	+0.1
1,703,329	+		IAI47_08060	0.45	-1.4
1,703,330	-		IAI47_08060	0.46	-1.7
1,703,330	-		IAI47_08060	0.46	-1.4
1,703,330	-		IAI47_08060	0.46	-0.2
1,703,330	-		IAI47_08060	0.46	-0.5
1,703,363	-		IAI47_08060	0.49	-0.9
1,703,363	-		IAI47_08060	0.49	+0.4
1,703,464	+		IAI47_08060	0.58	-0.1
1,703,465	-		IAI47_08060	0.58	+0.7
1,703,465	-		IAI47_08060	0.58	+1.5
1,703,465	-		IAI47_08060	0.58	-0.0
1,703,465	-		IAI47_08060	0.58	-1.2
1,703,465	-		IAI47_08060	0.58	+0.8
1,703,467	+		IAI47_08060	0.58	+1.5
1,703,467	+		IAI47_08060	0.58	-1.1
1,703,467	+		IAI47_08060	0.58	+2.1
1,703,467	+		IAI47_08060	0.58	+0.6
1,703,468	-		IAI47_08060	0.58	-0.9
1,703,468	-		IAI47_08060	0.58	+0.5
1,703,492	+		IAI47_08060	0.60	+1.0
1,703,492	+		IAI47_08060	0.60	+0.4
1,703,493	-		IAI47_08060	0.60	-1.3
1,703,530	+		IAI47_08060	0.64	-0.6
1,703,542	+		IAI47_08060	0.65	-1.3
1,703,554	+		IAI47_08060	0.66	-1.5
1,703,554	+		IAI47_08060	0.66	+0.9
1,703,555	-		IAI47_08060	0.66	-0.5
1,703,555	-		IAI47_08060	0.66	-0.3
1,703,585	+		IAI47_08060	0.69	-0.7
1,703,585	+		IAI47_08060	0.69	+0.5
1,703,586	-		IAI47_08060	0.69	-1.2
1,703,598	+		IAI47_08060	0.70	+1.0
1,703,624	-		IAI47_08060	0.72	+2.1
1,703,677	+		IAI47_08060	0.77	+0.6
1,703,677	+		IAI47_08060	0.77	-1.1
1,703,678	-		IAI47_08060	0.77	+0.5
1,703,678	-		IAI47_08060	0.77	-1.2
1,703,678	-		IAI47_08060	0.77	-0.2
1,703,678	-		IAI47_08060	0.77	+0.3
1,703,678	-		IAI47_08060	0.77	+1.4
1,703,678	-		IAI47_08060	0.77	+0.3
1,703,678	-		IAI47_08060	0.77	+2.3
1,703,682	-		IAI47_08060	0.77	-0.4
1,703,682	-		IAI47_08060	0.77	+0.1
1,703,689	+		IAI47_08060	0.78	-0.4
1,703,689	+		IAI47_08060	0.78	+0.5
1,703,689	+		IAI47_08060	0.78	-0.1
1,703,689	+		IAI47_08060	0.78	-0.7
1,703,689	+		IAI47_08060	0.78	+2.7
1,703,690	-		IAI47_08060	0.78	+0.1
1,703,690	-		IAI47_08060	0.78	-1.6
1,703,690	-		IAI47_08060	0.78	-2.3
1,703,690	-		IAI47_08060	0.78	-0.9
1,703,690	-		IAI47_08060	0.78	+0.1
1,703,690	-		IAI47_08060	0.78	+0.3
1,703,690	-		IAI47_08060	0.78	-0.5
1,703,812	+		IAI47_08060	0.89	-3.0
1,703,812	+		IAI47_08060	0.89	-2.2
1,703,812	+		IAI47_08060	0.89	+0.1
1,703,812	+		IAI47_08060	0.89	+2.5
1,703,812	+		IAI47_08060	0.89	+1.3
1,703,813	-		IAI47_08060	0.89	-0.4
1,703,841	+				+0.3
1,703,841	+				+3.3
1,703,842	-				-1.0
1,703,842	-				-1.0
1,703,853	-				-0.5
1,703,855	+				+0.2
1,703,855	+				+0.1
1,703,856	-				-0.9
1,703,856	-				+2.1
1,703,897	+				+0.9
1,703,898	-				-1.5
1,703,921	-				+0.0
1,703,921	-				+0.8
1,703,921	-				-1.6
1,703,921	-				+0.2
1,703,924	-				+0.3
1,703,940	+				-0.2
1,703,974	+				+0.4
1,703,989	+				+0.4
1,703,989	+				-0.9
1,703,994	+				+2.3
1,703,994	+				-1.7
1,703,995	-				-0.2
1,704,039	-				-1.2
1,704,070	+				+0.2
1,704,070	+				-2.4
1,704,071	-				+2.2
1,704,071	-				-1.3
1,704,071	-				-2.3
1,704,071	-				+0.0
1,704,071	-				-1.0
1,704,072	+				+0.5
1,704,072	+				+0.8
1,704,072	+				+0.8
1,704,072	+				+1.3
1,704,072	+				+0.9
1,704,072	+				-0.5
1,704,072	+				+1.2
1,704,072	+				-2.2
1,704,072	+				-1.5
1,704,073	-				-2.7
1,704,073	-				+0.9
1,704,073	-				+2.5
1,704,074	+				-0.2
1,704,074	+				+1.1
1,704,074	+				-0.2
1,704,074	+				-0.3
1,704,074	+				-0.5
1,704,074	+				+0.9
1,704,075	-				+2.7
1,704,075	-				-1.5
1,704,078	+				+1.3
1,704,078	+				+1.5
1,704,079	-				-1.4
1,704,079	-				+1.3
1,704,079	-				+0.1
1,704,192	-				-1.6
1,704,194	+				+0.8
1,704,221	-		IAI47_08065	0.12	-1.2
1,704,318	+		IAI47_08065	0.22	-1.5
1,704,346	+		IAI47_08065	0.24	+1.6
1,704,350	+		IAI47_08065	0.25	+1.0
1,704,350	+		IAI47_08065	0.25	+0.5
1,704,350	+		IAI47_08065	0.25	-0.6
1,704,399	-		IAI47_08065	0.30	+0.5
1,704,418	-		IAI47_08065	0.31	-0.1
1,704,439	+		IAI47_08065	0.33	+2.4
1,704,464	-		IAI47_08065	0.36	+1.3
1,704,539	+		IAI47_08065	0.43	-0.1
1,704,540	-		IAI47_08065	0.43	+1.2
1,704,544	-		IAI47_08065	0.44	-0.9
1,704,560	+		IAI47_08065	0.45	+2.1
1,704,561	-		IAI47_08065	0.45	-0.3
1,704,625	-		IAI47_08065	0.52	-0.1
1,704,651	-		IAI47_08065	0.54	-0.6
1,704,651	-		IAI47_08065	0.54	-0.3
1,704,712	+		IAI47_08065	0.60	+0.6
1,704,717	+		IAI47_08065	0.60	+1.1
1,704,919	-		IAI47_08065	0.80	+0.2