Strain Fitness in Pantoea sp. MT58 around IAI47_05285

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,115,518	+				+1.4
1,115,518	+				-1.2
1,115,518	+				-1.2
1,115,519	-				+2.0
1,115,519	-				+0.7
1,115,519	-				-1.7
1,115,519	-				+1.9
1,115,519	-				-1.5
1,115,523	+				-1.9
1,115,523	-				+0.3
1,115,523	-				-0.5
1,115,523	-				+0.6
1,115,523	-				+1.3
1,115,523	-				+1.2
1,115,531	+				-0.9
1,115,571	-				+0.1
1,115,599	+				-1.2
1,115,599	+				-0.3
1,115,599	+				+0.9
1,115,599	+				-1.1
1,115,600	-				+0.8
1,115,600	-				+2.9
1,115,600	-				+0.1
1,115,675	+				-0.1
1,115,675	+				-1.3
1,115,675	+				-2.3
1,115,675	+				+0.8
1,115,675	+				+0.1
1,115,675	+				-1.3
1,115,675	+				+3.0
1,115,676	-				+0.5
1,115,676	-				-1.6
1,115,676	-				-1.6
1,115,676	-				-0.6
1,115,676	-				-0.5
1,115,676	-				+1.9
1,115,705	+				-0.3
1,115,706	-				-1.1
1,115,706	-				+0.8
1,115,751	+		IAI47_05280	0.13	+0.9
1,115,752	-		IAI47_05280	0.13	-1.0
1,115,775	+		IAI47_05280	0.15	+1.5
1,115,775	+		IAI47_05280	0.15	-0.2
1,115,776	-		IAI47_05280	0.16	-1.3
1,115,785	+		IAI47_05280	0.17	+0.1
1,115,785	+		IAI47_05280	0.17	-1.3
1,115,785	+		IAI47_05280	0.17	-0.5
1,115,786	-		IAI47_05280	0.17	-0.2
1,115,788	+		IAI47_05280	0.17	-0.2
1,115,789	-		IAI47_05280	0.17	+1.0
1,115,789	-		IAI47_05280	0.17	-1.2
1,115,789	-		IAI47_05280	0.17	-0.4
1,115,789	-		IAI47_05280	0.17	+0.5
1,115,789	-		IAI47_05280	0.17	-2.1
1,115,794	+		IAI47_05280	0.18	-1.2
1,115,895	+		IAI47_05280	0.29	-2.8
1,115,895	+		IAI47_05280	0.29	+0.7
1,115,896	-		IAI47_05280	0.29	-2.4
1,115,896	-		IAI47_05280	0.29	+0.0
1,115,922	+		IAI47_05280	0.32	-0.5
1,115,922	+		IAI47_05280	0.32	+2.9
1,115,923	-		IAI47_05280	0.33	+0.4
1,115,923	-		IAI47_05280	0.33	-0.4
1,115,923	-		IAI47_05280	0.33	-2.2
1,115,923	-		IAI47_05280	0.33	-2.1
1,115,959	+		IAI47_05280	0.37	+1.3
1,115,959	+		IAI47_05280	0.37	-0.6
1,115,959	+		IAI47_05280	0.37	-1.2
1,115,959	+		IAI47_05280	0.37	-0.9
1,115,959	+		IAI47_05280	0.37	+0.7
1,115,959	+		IAI47_05280	0.37	-0.9
1,115,960	-		IAI47_05280	0.37	-1.7
1,115,960	-		IAI47_05280	0.37	+0.6
1,115,960	-		IAI47_05280	0.37	+0.6
1,115,983	+		IAI47_05280	0.39	-1.7
1,115,983	+		IAI47_05280	0.39	-0.4
1,115,983	+		IAI47_05280	0.39	-0.2
1,115,984	-		IAI47_05280	0.40	+0.3
1,115,984	-		IAI47_05280	0.40	+0.1
1,116,040	+		IAI47_05280	0.46	-1.7
1,116,040	+		IAI47_05280	0.46	+2.3
1,116,040	+		IAI47_05280	0.46	-0.6
1,116,040	+		IAI47_05280	0.46	+0.0
1,116,040	+		IAI47_05280	0.46	+1.3
1,116,040	+		IAI47_05280	0.46	+0.6
1,116,040	+		IAI47_05280	0.46	-2.9
1,116,041	-		IAI47_05280	0.46	+1.3
1,116,041	-		IAI47_05280	0.46	-0.6
1,116,041	-		IAI47_05280	0.46	-1.3
1,116,041	-		IAI47_05280	0.46	-0.6
1,116,041	-		IAI47_05280	0.46	+1.2
1,116,041	-		IAI47_05280	0.46	-0.7
1,116,041	-		IAI47_05280	0.46	-0.2
1,116,041	-		IAI47_05280	0.46	-1.4
1,116,041	-		IAI47_05280	0.46	-1.7
1,116,041	-		IAI47_05280	0.46	-1.7
1,116,041	-		IAI47_05280	0.46	-1.0
1,116,064	+		IAI47_05280	0.49	+1.0
1,116,064	+		IAI47_05280	0.49	+0.7
1,116,064	+		IAI47_05280	0.49	-0.5
1,116,064	+		IAI47_05280	0.49	-1.2
1,116,065	-		IAI47_05280	0.49	-0.1
1,116,065	-		IAI47_05280	0.49	+1.1
1,116,065	-		IAI47_05280	0.49	+0.3
1,116,082	+		IAI47_05280	0.51	+2.4
1,116,082	+		IAI47_05280	0.51	+0.0
1,116,133	+		IAI47_05280	0.57	+1.4
1,116,133	+		IAI47_05280	0.57	-1.0
1,116,134	-		IAI47_05280	0.57	+0.5
1,116,134	-		IAI47_05280	0.57	+1.7
1,116,180	+		IAI47_05280	0.62	-0.3
1,116,181	-		IAI47_05280	0.62	-1.6
1,116,190	-		IAI47_05280	0.63	-0.2
1,116,190	-		IAI47_05280	0.63	+1.0
1,116,190	-		IAI47_05280	0.63	+2.1
1,116,194	+		IAI47_05280	0.64	-0.0
1,116,194	+		IAI47_05280	0.64	-1.7
1,116,194	+		IAI47_05280	0.64	+0.4
1,116,195	-		IAI47_05280	0.64	+1.4
1,116,292	+		IAI47_05280	0.75	-0.6
1,116,292	+		IAI47_05280	0.75	-0.6
1,116,292	+		IAI47_05280	0.75	+1.3
1,116,292	+		IAI47_05280	0.75	-0.7
1,116,292	+		IAI47_05280	0.75	-1.1
1,116,292	+		IAI47_05280	0.75	+0.8
1,116,292	+		IAI47_05280	0.75	+0.1
1,116,292	+		IAI47_05280	0.75	+1.4
1,116,292	+		IAI47_05280	0.75	-0.7
1,116,292	+		IAI47_05280	0.75	+0.6
1,116,292	+		IAI47_05280	0.75	+0.2
1,116,292	+		IAI47_05280	0.75	-2.2
1,116,292	+		IAI47_05280	0.75	-0.7
1,116,292	+		IAI47_05280	0.75	+0.1
1,116,292	+		IAI47_05280	0.75	+0.4
1,116,292	+		IAI47_05280	0.75	-1.8
1,116,293	-		IAI47_05280	0.75	-1.0
1,116,293	-		IAI47_05280	0.75	+0.4
1,116,293	-		IAI47_05280	0.75	+0.4
1,116,293	-		IAI47_05280	0.75	-1.2
1,116,293	-		IAI47_05280	0.75	-1.2
1,116,293	-		IAI47_05280	0.75	-0.8
1,116,293	-		IAI47_05280	0.75	-1.5
1,116,293	-		IAI47_05280	0.75	+0.0
1,116,293	-		IAI47_05280	0.75	-2.0
1,116,293	-		IAI47_05280	0.75	+1.3
1,116,293	-		IAI47_05280	0.75	-1.2
1,116,293	-		IAI47_05280	0.75	-1.5
1,116,293	-		IAI47_05280	0.75	+2.0
1,116,293	-		IAI47_05280	0.75	-2.4
1,116,293	-		IAI47_05280	0.75	-2.0
1,116,293	-		IAI47_05280	0.75	-2.2
1,116,293	-		IAI47_05280	0.75	-0.2
1,116,294	+		IAI47_05280	0.75	+0.7
1,116,294	+		IAI47_05280	0.75	+0.3
1,116,294	+		IAI47_05280	0.75	-0.2
1,116,294	+		IAI47_05280	0.75	-1.1
1,116,294	+		IAI47_05280	0.75	-1.2
1,116,294	+		IAI47_05280	0.75	+0.2
1,116,294	+		IAI47_05280	0.75	-1.2
1,116,294	+		IAI47_05280	0.75	+0.7
1,116,295	-		IAI47_05280	0.75	+0.3
1,116,295	-		IAI47_05280	0.75	+0.7
1,116,295	-		IAI47_05280	0.75	-1.8
1,116,295	-		IAI47_05280	0.75	-1.6
1,116,295	-		IAI47_05280	0.75	-0.0
1,116,295	-		IAI47_05280	0.75	-0.5
1,116,295	-		IAI47_05280	0.75	-1.2
1,116,295	-		IAI47_05280	0.75	+1.8
1,116,295	-		IAI47_05280	0.75	-2.2
1,116,399	-		IAI47_05280	0.87	+1.5
1,116,415	-		IAI47_05280	0.89	-1.2
1,116,415	-		IAI47_05280	0.89	+0.6
1,116,439	+				-0.4
1,116,439	+				+1.8
1,116,439	+				-2.1
1,116,439	+				-1.4
1,116,439	+				+0.8
1,116,439	+				+1.3
1,116,440	-				+1.7
1,116,440	-				+1.0
1,116,440	-				-2.7
1,116,440	-				+0.9
1,116,440	-				+1.8
1,116,440	-				-0.4
1,116,451	-				+0.0
1,116,524	+				+1.0
1,116,524	+				-0.6
1,116,524	+				-1.2
1,116,524	+				-1.4
1,116,524	+				-1.7
1,116,524	+				-0.1
1,116,524	+				+2.3
1,116,524	+				-1.3
1,116,525	-				+0.4
1,116,525	-				+0.0
1,116,634	+				-2.2
1,116,635	-				-0.2
1,116,635	-				-0.3
1,116,677	+				-1.9
1,116,677	+				+1.1
1,116,677	+				-1.3
1,116,677	+				+0.1
1,116,677	+				-0.5
1,116,677	+				+0.6
1,116,678	-				+1.6
1,116,678	-				-1.2
1,116,678	-				+0.9
1,116,678	-				+0.7
1,116,678	-				-1.7
1,116,678	-				-0.5
1,116,803	+		IAI47_05285	0.15	-1.5
1,116,803	+		IAI47_05285	0.15	+0.8
1,116,803	+		IAI47_05285	0.15	-0.1
1,116,803	+		IAI47_05285	0.15	+0.4
1,116,803	+		IAI47_05285	0.15	+1.8
1,116,803	+		IAI47_05285	0.15	+1.2
1,116,804	-		IAI47_05285	0.15	+0.8
1,116,804	-		IAI47_05285	0.15	-0.1
1,116,815	-		IAI47_05285	0.16	-1.5
1,116,952	+		IAI47_05285	0.23	-0.1
1,116,952	+		IAI47_05285	0.23	+0.6
1,116,952	+		IAI47_05285	0.23	+1.8
1,116,953	-		IAI47_05285	0.23	-0.3
1,116,953	-		IAI47_05285	0.23	-0.3
1,116,953	-		IAI47_05285	0.23	+0.0
1,116,953	-		IAI47_05285	0.23	-1.6
1,117,110	-		IAI47_05285	0.31	+1.2
1,117,312	+		IAI47_05285	0.41	-1.6
1,117,363	+		IAI47_05285	0.44	-0.5
1,117,363	+		IAI47_05285	0.44	-0.4
1,117,363	+		IAI47_05285	0.44	-0.8
1,117,363	+		IAI47_05285	0.44	-1.8
1,117,363	+		IAI47_05285	0.44	+0.6
1,117,364	-		IAI47_05285	0.44	-1.8
1,117,364	-		IAI47_05285	0.44	+2.5
1,117,372	-		IAI47_05285	0.44	+1.7
1,117,372	-		IAI47_05285	0.44	+0.7
1,117,394	+		IAI47_05285	0.45	-1.6
1,117,394	+		IAI47_05285	0.45	+1.0
1,117,400	+		IAI47_05285	0.46	-1.1
1,117,400	+		IAI47_05285	0.46	-0.2
1,117,400	+		IAI47_05285	0.46	+0.5
1,117,400	+		IAI47_05285	0.46	-0.0
1,117,401	-		IAI47_05285	0.46	-1.7
1,117,401	-		IAI47_05285	0.46	-1.3
1,117,401	-		IAI47_05285	0.46	-1.3
1,117,401	-		IAI47_05285	0.46	-0.0
1,117,431	+		IAI47_05285	0.47	+1.9
1,117,431	+		IAI47_05285	0.47	+1.9
1,117,431	+		IAI47_05285	0.47	+1.3
1,117,431	+		IAI47_05285	0.47	+0.6
1,117,432	-		IAI47_05285	0.47	-0.9
1,117,432	-		IAI47_05285	0.47	-0.6
1,117,432	-		IAI47_05285	0.47	+0.0
1,117,432	-		IAI47_05285	0.47	-0.5
1,117,434	+		IAI47_05285	0.47	-0.5
1,117,434	+		IAI47_05285	0.47	-0.4
1,117,434	+		IAI47_05285	0.47	-0.8
1,117,434	+		IAI47_05285	0.47	+0.0
1,117,434	+		IAI47_05285	0.47	+0.8
1,117,435	-		IAI47_05285	0.48	+0.1
1,117,435	-		IAI47_05285	0.48	-1.1
1,117,435	-		IAI47_05285	0.48	+0.0
1,117,435	-		IAI47_05285	0.48	+5.0
1,117,435	-		IAI47_05285	0.48	+2.2
1,117,435	-		IAI47_05285	0.48	+2.1
1,117,435	-		IAI47_05285	0.48	+1.9
1,117,617	+		IAI47_05285	0.57	+2.2
1,117,664	+		IAI47_05285	0.59	-0.4
1,117,700	-		IAI47_05285	0.61	+2.9
1,117,700	-		IAI47_05285	0.61	-0.9
1,117,700	-		IAI47_05285	0.61	-1.4
1,117,700	-		IAI47_05285	0.61	+0.4
1,117,950	+		IAI47_05285	0.74	+1.2
1,117,950	+		IAI47_05285	0.74	+1.4
1,117,950	+		IAI47_05285	0.74	-1.8
1,117,950	+		IAI47_05285	0.74	-0.9
1,117,950	+		IAI47_05285	0.74	+1.1
1,117,951	-		IAI47_05285	0.74	+0.7
1,117,951	-		IAI47_05285	0.74	+0.2
1,117,951	-		IAI47_05285	0.74	+0.9
1,117,951	-		IAI47_05285	0.74	+1.8
1,117,951	-		IAI47_05285	0.74	+0.7
1,117,971	+		IAI47_05285	0.75	+0.2
1,118,012	+		IAI47_05285	0.77	+0.4
1,118,012	+		IAI47_05285	0.77	-3.1
1,118,026	+		IAI47_05285	0.78	-1.9
1,118,026	+		IAI47_05285	0.78	+3.6
1,118,027	-		IAI47_05285	0.78	+0.5
1,118,058	+		IAI47_05285	0.79	+1.6
1,118,058	+		IAI47_05285	0.79	-0.6
1,118,059	-		IAI47_05285	0.79	+0.2
1,118,059	-		IAI47_05285	0.79	-0.3
1,118,073	-		IAI47_05285	0.80	-1.2
1,118,073	-		IAI47_05285	0.80	+0.7
1,118,104	+		IAI47_05285	0.82	-1.3
1,118,159	+		IAI47_05285	0.85	-0.2
1,118,160	-		IAI47_05285	0.85	+0.4
1,118,160	-		IAI47_05285	0.85	+0.5
1,118,160	-		IAI47_05285	0.85	+0.1
1,118,160	-		IAI47_05285	0.85	+0.5
1,118,195	+		IAI47_05285	0.86	-1.6
1,118,195	+		IAI47_05285	0.86	-0.2
1,118,203	+		IAI47_05285	0.87	+1.4
1,118,203	+		IAI47_05285	0.87	+1.3
1,118,204	-		IAI47_05285	0.87	-0.5
1,118,204	-		IAI47_05285	0.87	+0.4
1,118,216	+		IAI47_05285	0.88	+1.8
1,118,216	+		IAI47_05285	0.88	-1.4
1,118,217	-		IAI47_05285	0.88	+0.3
1,118,217	-		IAI47_05285	0.88	-2.0
1,118,217	-		IAI47_05285	0.88	+0.3
1,118,217	-		IAI47_05285	0.88	-1.7
1,118,217	-		IAI47_05285	0.88	-2.9
1,118,318	-				-2.4
1,118,350	+				-1.6
1,118,387	+				+1.4
1,118,407	+				-0.3
1,118,407	+				-0.7
1,118,407	+				-1.5
1,118,408	-				+0.8
1,118,408	-				+0.0
1,118,408	-				+1.6
1,118,502	-				-0.4
1,118,532	-				+0.5
1,118,532	-				-1.0
1,118,569	+				-1.4
1,118,569	+				+0.2
1,118,569	+				-0.1
1,118,570	-				+1.1
1,118,570	-				+0.4
1,118,570	-				-1.3
1,118,570	-				-2.6
1,118,573	+				-1.7
1,118,573	+				-0.7
1,118,574	-				+0.8
1,118,574	-				-2.2
1,118,574	-				+0.6
1,118,593	-				+0.9
1,118,593	-				-2.4
1,118,593	-				-0.8
1,118,617	+				-0.2
1,118,617	+				-0.8
1,118,617	+				-0.8
1,118,763	+		IAI47_05290	0.30	+2.2
1,118,763	+		IAI47_05290	0.30	+1.6
1,118,763	+		IAI47_05290	0.30	-1.4
1,118,764	-		IAI47_05290	0.30	-0.5
1,118,858	+		IAI47_05290	0.44	-1.6
1,118,858	+		IAI47_05290	0.44	+0.2
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