Strain Fitness in Pantoea sp. MT58 around IAI47_04495

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04490 and IAI47_04495 are separated by 36 nucleotidesIAI47_04495 and IAI47_04500 are separated by 16 nucleotides IAI47_04490: IAI47_04490 - tRNA/rRNA methyltransferase, at 944,598 to 945,782 _04490 IAI47_04495: IAI47_04495 - multidrug efflux MFS transporter permease subunit EmrB, at 945,819 to 947,354 _04495 IAI47_04500: IAI47_04500 - multidrug efflux MFS transporter periplasmic adaptor subunit EmrA, at 947,371 to 948,543 _04500 Position (kb) 945 946 947 948Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 944.947 kb on + strand, within IAI47_04490at 944.993 kb on + strand, within IAI47_04490at 944.993 kb on + strand, within IAI47_04490at 944.993 kb on + strand, within IAI47_04490at 944.993 kb on + strand, within IAI47_04490at 944.994 kb on - strand, within IAI47_04490at 945.079 kb on - strand, within IAI47_04490at 945.079 kb on - strand, within IAI47_04490at 945.079 kb on - strand, within IAI47_04490at 945.079 kb on - strand, within IAI47_04490at 945.207 kb on + strand, within IAI47_04490at 945.208 kb on - strand, within IAI47_04490at 945.208 kb on - strand, within IAI47_04490at 945.208 kb on - strand, within IAI47_04490at 945.208 kb on - strand, within IAI47_04490at 945.208 kb on - strand, within IAI47_04490at 945.208 kb on - strand, within IAI47_04490at 945.217 kb on + strand, within IAI47_04490at 945.217 kb on + strand, within IAI47_04490at 945.217 kb on + strand, within IAI47_04490at 945.218 kb on - strand, within IAI47_04490at 945.290 kb on + strand, within IAI47_04490at 945.290 kb on + strand, within IAI47_04490at 945.291 kb on - strand, within IAI47_04490at 945.291 kb on - strand, within IAI47_04490at 945.344 kb on - strand, within IAI47_04490at 945.365 kb on + strand, within IAI47_04490at 945.374 kb on + strand, within IAI47_04490at 945.374 kb on + strand, within IAI47_04490at 945.390 kb on - strand, within IAI47_04490at 945.390 kb on - strand, within IAI47_04490at 945.416 kb on - strand, within IAI47_04490at 945.430 kb on + strand, within IAI47_04490at 945.430 kb on + strand, within IAI47_04490at 945.431 kb on - strand, within IAI47_04490at 945.431 kb on - strand, within IAI47_04490at 945.606 kb on - strand, within IAI47_04490at 945.606 kb on - strand, within IAI47_04490at 945.635 kb on - strand, within IAI47_04490at 945.635 kb on - strand, within IAI47_04490at 945.635 kb on - strand, within IAI47_04490at 945.715 kb on + strandat 945.715 kb on + strandat 945.715 kb on + strandat 945.715 kb on + strandat 945.715 kb on + strandat 945.716 kb on - strandat 945.716 kb on - strandat 945.716 kb on - strandat 945.748 kb on + strandat 945.749 kb on - strandat 945.749 kb on - strandat 945.749 kb on - strandat 945.781 kb on - strandat 945.953 kb on + strandat 945.954 kb on - strandat 945.969 kb on - strandat 945.969 kb on - strandat 946.016 kb on + strand, within IAI47_04495at 946.016 kb on + strand, within IAI47_04495at 946.016 kb on + strand, within IAI47_04495at 946.017 kb on - strand, within IAI47_04495at 946.017 kb on - strand, within IAI47_04495at 946.018 kb on + strand, within IAI47_04495at 946.018 kb on + strand, within IAI47_04495at 946.018 kb on + strand, within IAI47_04495at 946.018 kb on + strand, within IAI47_04495at 946.018 kb on + strand, within IAI47_04495at 946.018 kb on + strand, within IAI47_04495at 946.018 kb on + strand, within IAI47_04495at 946.019 kb on - strand, within IAI47_04495at 946.019 kb on - strand, within IAI47_04495at 946.019 kb on - strand, within IAI47_04495at 946.019 kb on - strand, within IAI47_04495at 946.019 kb on - strand, within IAI47_04495at 946.019 kb on - strand, within IAI47_04495at 946.019 kb on - strand, within IAI47_04495at 946.019 kb on - strand, within IAI47_04495at 946.019 kb on - strand, within IAI47_04495at 946.019 kb on - strand, within IAI47_04495at 946.019 kb on - strand, within IAI47_04495at 946.019 kb on - strand, within IAI47_04495at 946.034 kb on + strand, within IAI47_04495at 946.035 kb on - strand, within IAI47_04495at 946.035 kb on - strand, within IAI47_04495at 946.064 kb on + strand, within IAI47_04495at 946.064 kb on + strand, within IAI47_04495at 946.064 kb on + strand, within IAI47_04495at 946.064 kb on + strand, within IAI47_04495at 946.064 kb on + strand, within IAI47_04495at 946.065 kb on - strand, within IAI47_04495at 946.065 kb on - strand, within IAI47_04495at 946.065 kb on - strand, within IAI47_04495at 946.065 kb on - strand, within IAI47_04495at 946.065 kb on - strand, within IAI47_04495at 946.065 kb on - strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strandat 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.066 kb on + strand, within IAI47_04495at 946.067 kb on - strand, within IAI47_04495at 946.067 kb on - strand, within IAI47_04495at 946.067 kb on - strand, within IAI47_04495at 946.067 kb on - strand, within IAI47_04495at 946.067 kb on - strand, within IAI47_04495at 946.067 kb on - strand, within IAI47_04495at 946.067 kb on - strand, within IAI47_04495at 946.067 kb on - strand, within IAI47_04495at 946.067 kb on - strand, within IAI47_04495at 946.067 kb on - strand, within IAI47_04495at 946.067 kb on - strand, within IAI47_04495at 946.067 kb on - strand, within IAI47_04495at 946.067 kb on - strand, within IAI47_04495at 946.070 kb on + strand, within IAI47_04495at 946.070 kb on + strand, within IAI47_04495at 946.070 kb on + strand, within IAI47_04495at 946.070 kb on + strand, within IAI47_04495at 946.070 kb on + strand, within IAI47_04495at 946.070 kb on + strand, within IAI47_04495at 946.070 kb on + strand, within IAI47_04495at 946.070 kb on + strand, within IAI47_04495at 946.070 kb on + strand, within IAI47_04495at 946.070 kb on + strand, within IAI47_04495at 946.070 kb on + strand, within IAI47_04495at 946.070 kb on + strand, within IAI47_04495at 946.070 kb on + strand, within IAI47_04495at 946.070 kb on + strand, within IAI47_04495at 946.070 kb on + strand, within IAI47_04495at 946.070 kb on + strand, within IAI47_04495at 946.070 kb on + strand, within IAI47_04495at 946.071 kb on - strand, within IAI47_04495at 946.071 kb on - strand, within IAI47_04495at 946.071 kb on - strand, within IAI47_04495at 946.071 kb on - strand, within IAI47_04495at 946.071 kb on - strand, within IAI47_04495at 946.071 kb on - strand, within IAI47_04495at 946.071 kb on - strand, within IAI47_04495at 946.071 kb on - strand, within IAI47_04495at 946.071 kb on - strand, within IAI47_04495at 946.071 kb on - strand, within IAI47_04495at 946.071 kb on - strand, within IAI47_04495at 946.071 kb on - strand, within IAI47_04495at 946.071 kb on - strand, within IAI47_04495at 946.071 kb on - strand, within IAI47_04495at 946.071 kb on - strand, within IAI47_04495at 946.071 kb on - strand, within IAI47_04495at 946.071 kb on - strand, within IAI47_04495at 946.110 kb on - strand, within IAI47_04495at 946.110 kb on - strand, within IAI47_04495at 946.110 kb on - strand, within IAI47_04495at 946.122 kb on + strand, within IAI47_04495at 946.140 kb on - strand, within IAI47_04495at 946.140 kb on - strand, within IAI47_04495at 946.146 kb on - strand, within IAI47_04495at 946.146 kb on - strand, within IAI47_04495at 946.202 kb on + strand, within IAI47_04495at 946.202 kb on + strand, within IAI47_04495at 946.203 kb on - strand, within IAI47_04495at 946.203 kb on - strand, within IAI47_04495at 946.203 kb on - strand, within IAI47_04495at 946.203 kb on - strand, within IAI47_04495at 946.203 kb on - strand, within IAI47_04495at 946.203 kb on - strand, within IAI47_04495at 946.205 kb on + strand, within IAI47_04495at 946.205 kb on + strand, within IAI47_04495at 946.205 kb on + strand, within IAI47_04495at 946.205 kb on + strand, within IAI47_04495at 946.206 kb on - strand, within IAI47_04495at 946.206 kb on - strand, within IAI47_04495at 946.220 kb on + strand, within IAI47_04495at 946.250 kb on + strand, within IAI47_04495at 946.250 kb on + strand, within IAI47_04495at 946.298 kb on + strand, within IAI47_04495at 946.298 kb on + strand, within IAI47_04495at 946.298 kb on + strand, within IAI47_04495at 946.298 kb on + strand, within IAI47_04495at 946.299 kb on - strand, within IAI47_04495at 946.299 kb on - strand, within IAI47_04495at 946.299 kb on - strand, within IAI47_04495at 946.299 kb on - strand, within IAI47_04495at 946.301 kb on - strand, within IAI47_04495at 946.313 kb on - strand, within IAI47_04495at 946.327 kb on + strand, within IAI47_04495at 946.327 kb on + strand, within IAI47_04495at 946.327 kb on + strand, within IAI47_04495at 946.327 kb on + strand, within IAI47_04495at 946.327 kb on + strand, within IAI47_04495at 946.327 kb on + strand, within IAI47_04495at 946.327 kb on + strand, within IAI47_04495at 946.327 kb on + strand, within IAI47_04495at 946.327 kb on + strand, within IAI47_04495at 946.327 kb on + strand, within IAI47_04495at 946.328 kb on - strand, within IAI47_04495at 946.328 kb on - strand, within IAI47_04495at 946.328 kb on - strand, within IAI47_04495at 946.328 kb on - strand, within IAI47_04495at 946.328 kb on - strand, within IAI47_04495at 946.328 kb on - strand, within IAI47_04495at 946.328 kb on - strand, within IAI47_04495at 946.331 kb on + strand, within IAI47_04495at 946.331 kb on + strand, within IAI47_04495at 946.331 kb on + strand, within IAI47_04495at 946.331 kb on + strand, within IAI47_04495at 946.331 kb on + strand, within IAI47_04495at 946.331 kb on + strand, within IAI47_04495at 946.331 kb on + strand, within IAI47_04495at 946.331 kb on + strand, within IAI47_04495at 946.331 kb on + strand, within IAI47_04495at 946.331 kb on + strand, within IAI47_04495at 946.331 kb on + strand, within IAI47_04495at 946.331 kb on + strand, within IAI47_04495at 946.331 kb on + strand, within IAI47_04495at 946.331 kb on + strand, within IAI47_04495at 946.331 kb on + strand, within IAI47_04495at 946.331 kb on + strand, within IAI47_04495at 946.331 kb on + strand, within IAI47_04495at 946.332 kb on - strand, within IAI47_04495at 946.332 kb on - strand, within IAI47_04495at 946.332 kb on - strand, within IAI47_04495at 946.332 kb on - strand, within IAI47_04495at 946.332 kb on - strand, within IAI47_04495at 946.332 kb on - strand, within IAI47_04495at 946.332 kb on - strand, within IAI47_04495at 946.332 kb on - strand, within IAI47_04495at 946.332 kb on - strand, within IAI47_04495at 946.332 kb on - strand, within IAI47_04495at 946.332 kb on - strand, within IAI47_04495at 946.332 kb on - strand, within IAI47_04495at 946.332 kb on - strand, within IAI47_04495at 946.332 kb on - strand, within IAI47_04495at 946.332 kb on - strand, within IAI47_04495at 946.332 kb on - strand, within IAI47_04495at 946.371 kb on - strand, within IAI47_04495at 946.371 kb on - strand, within IAI47_04495at 946.411 kb on - strand, within IAI47_04495at 946.411 kb on - strand, within IAI47_04495at 946.411 kb on - strand, within IAI47_04495at 946.419 kb on + strand, within IAI47_04495at 946.454 kb on + strand, within IAI47_04495at 946.454 kb on + strand, within IAI47_04495at 946.454 kb on + strand, within IAI47_04495at 946.455 kb on - strand, within IAI47_04495at 946.456 kb on + strand, within IAI47_04495at 946.462 kb on + strand, within IAI47_04495at 946.462 kb on + strand, within IAI47_04495at 946.463 kb on - strand, within IAI47_04495at 946.463 kb on - strand, within IAI47_04495at 946.495 kb on - strand, within IAI47_04495at 946.495 kb on - strand, within IAI47_04495at 946.495 kb on - strand, within IAI47_04495at 946.508 kb on - strand, within IAI47_04495at 946.516 kb on + strand, within IAI47_04495at 946.516 kb on + strand, within IAI47_04495at 946.516 kb on + strand, within IAI47_04495at 946.516 kb on + strand, within IAI47_04495at 946.517 kb on - strand, within IAI47_04495at 946.517 kb on - strand, within IAI47_04495at 946.517 kb on - strand, within IAI47_04495at 946.517 kb on - strand, within IAI47_04495at 946.517 kb on - strand, within IAI47_04495at 946.517 kb on - strand, within IAI47_04495at 946.547 kb on + strand, within IAI47_04495at 946.547 kb on + strand, within IAI47_04495at 946.548 kb on - strand, within IAI47_04495at 946.548 kb on - strand, within IAI47_04495at 946.562 kb on + strand, within IAI47_04495at 946.562 kb on + strand, within IAI47_04495at 946.563 kb on - strand, within IAI47_04495at 946.563 kb on - strand, within IAI47_04495at 946.648 kb on - strand, within IAI47_04495at 946.648 kb on - strand, within IAI47_04495at 946.655 kb on + strand, within IAI47_04495at 946.656 kb on - strand, within IAI47_04495at 946.670 kb on + strand, within IAI47_04495at 946.710 kb on + strand, within IAI47_04495at 946.711 kb on - strand, within IAI47_04495at 946.711 kb on - strand, within IAI47_04495at 946.776 kb on - strand, within IAI47_04495at 946.809 kb on + strand, within IAI47_04495at 946.810 kb on - strand, within IAI47_04495at 946.810 kb on - strand, within IAI47_04495at 946.810 kb on - strand, within IAI47_04495at 946.810 kb on - strand, within IAI47_04495at 946.841 kb on + strand, within IAI47_04495at 946.841 kb on + strand, within IAI47_04495at 946.841 kb on + strand, within IAI47_04495at 946.842 kb on - strand, within IAI47_04495at 946.842 kb on - strand, within IAI47_04495at 946.864 kb on + strand, within IAI47_04495at 946.864 kb on + strand, within IAI47_04495at 946.864 kb on + strand, within IAI47_04495at 946.864 kb on + strand, within IAI47_04495at 946.864 kb on + strand, within IAI47_04495at 946.864 kb on + strand, within IAI47_04495at 946.864 kb on + strand, within IAI47_04495at 946.864 kb on + strand, within IAI47_04495at 946.865 kb on - strand, within IAI47_04495at 946.865 kb on - strand, within IAI47_04495at 946.865 kb on - strand, within IAI47_04495at 946.865 kb on - strand, within IAI47_04495at 946.865 kb on - strand, within IAI47_04495at 946.865 kb on - strand, within IAI47_04495at 946.868 kb on + strand, within IAI47_04495at 946.868 kb on + strand, within IAI47_04495at 946.868 kb on + strand, within IAI47_04495at 946.868 kb on + strand, within IAI47_04495at 946.869 kb on - strand, within IAI47_04495at 946.869 kb on - strand, within IAI47_04495at 946.869 kb on - strand, within IAI47_04495at 946.966 kb on + strand, within IAI47_04495at 946.967 kb on - strand, within IAI47_04495at 946.967 kb on - strand, within IAI47_04495at 947.058 kb on - strand, within IAI47_04495at 947.066 kb on + strand, within IAI47_04495at 947.066 kb on + strand, within IAI47_04495at 947.066 kb on + strand, within IAI47_04495at 947.066 kb on + strand, within IAI47_04495at 947.066 kb on + strand, within IAI47_04495at 947.066 kb on + strand, within IAI47_04495at 947.067 kb on - strand, within IAI47_04495at 947.067 kb on - strand, within IAI47_04495at 947.067 kb on - strand, within IAI47_04495at 947.067 kb on - strand, within IAI47_04495at 947.067 kb on - strand, within IAI47_04495at 947.197 kb on - strand, within IAI47_04495at 947.204 kb on + strandat 947.243 kb on + strandat 947.243 kb on + strandat 947.243 kb on + strandat 947.244 kb on - strandat 947.355 kb on + strandat 947.355 kb on + strandat 947.356 kb on - strandat 947.450 kb on + strandat 947.451 kb on - strandat 947.451 kb on - strandat 947.451 kb on - strandat 947.476 kb on - strandat 947.505 kb on + strand, within IAI47_04500at 947.613 kb on + strand, within IAI47_04500at 947.620 kb on - strand, within IAI47_04500at 947.690 kb on + strand, within IAI47_04500at 947.691 kb on - strand, within IAI47_04500at 947.691 kb on - strand, within IAI47_04500at 947.708 kb on + strand, within IAI47_04500at 947.708 kb on + strand, within IAI47_04500at 947.708 kb on + strand, within IAI47_04500at 947.708 kb on + strand, within IAI47_04500at 947.708 kb on + strand, within IAI47_04500at 947.708 kb on + strand, within IAI47_04500at 947.708 kb on + strand, within IAI47_04500at 947.709 kb on - strand, within IAI47_04500at 947.709 kb on - strand, within IAI47_04500at 947.709 kb on - strand, within IAI47_04500at 947.709 kb on - strand, within IAI47_04500at 947.709 kb on - strand, within IAI47_04500at 947.709 kb on - strand, within IAI47_04500at 947.709 kb on - strand, within IAI47_04500at 947.709 kb on - strand, within IAI47_04500at 947.746 kb on + strand, within IAI47_04500at 947.746 kb on + strand, within IAI47_04500at 947.747 kb on - strand, within IAI47_04500at 947.747 kb on - strand, within IAI47_04500at 947.747 kb on - strand, within IAI47_04500at 947.973 kb on + strand, within IAI47_04500at 947.974 kb on - strand, within IAI47_04500at 947.974 kb on - strand, within IAI47_04500at 947.994 kb on + strand, within IAI47_04500at 947.995 kb on - strand, within IAI47_04500at 948.000 kb on + strand, within IAI47_04500at 948.000 kb on + strand, within IAI47_04500at 948.000 kb on + strand, within IAI47_04500at 948.000 kb on + strand, within IAI47_04500at 948.000 kb on + strand, within IAI47_04500at 948.000 kb on + strand, within IAI47_04500at 948.000 kb on + strand, within IAI47_04500at 948.000 kb on + strand, within IAI47_04500at 948.000 kb on + strand, within IAI47_04500at 948.001 kb on - strand, within IAI47_04500at 948.001 kb on - strand, within IAI47_04500at 948.001 kb on - strand, within IAI47_04500at 948.001 kb on - strand, within IAI47_04500at 948.001 kb on - strand, within IAI47_04500at 948.001 kb on - strand, within IAI47_04500at 948.001 kb on - strand, within IAI47_04500at 948.001 kb on - strand, within IAI47_04500at 948.002 kb on + strand, within IAI47_04500at 948.002 kb on + strand, within IAI47_04500at 948.002 kb on + strand, within IAI47_04500at 948.003 kb on - strand, within IAI47_04500at 948.003 kb on - strand, within IAI47_04500at 948.003 kb on - strand, within IAI47_04500at 948.003 kb on - strand, within IAI47_04500at 948.034 kb on - strand, within IAI47_04500at 948.087 kb on + strand, within IAI47_04500at 948.091 kb on + strand, within IAI47_04500at 948.091 kb on + strand, within IAI47_04500at 948.091 kb on + strand, within IAI47_04500at 948.091 kb on + strand, within IAI47_04500at 948.091 kb on + strand, within IAI47_04500at 948.091 kb on + strand, within IAI47_04500at 948.092 kb on - strand, within IAI47_04500at 948.092 kb on - strand, within IAI47_04500at 948.092 kb on - strand, within IAI47_04500at 948.092 kb on - strand, within IAI47_04500at 948.092 kb on - strand, within IAI47_04500at 948.092 kb on - strand, within IAI47_04500at 948.092 kb on - strand, within IAI47_04500at 948.092 kb on - strand, within IAI47_04500at 948.156 kb on + strand, within IAI47_04500at 948.156 kb on + strand, within IAI47_04500at 948.156 kb on + strand, within IAI47_04500at 948.157 kb on - strand, within IAI47_04500at 948.157 kb on - strand, within IAI47_04500at 948.157 kb on - strand, within IAI47_04500at 948.157 kb on - strand, within IAI47_04500at 948.170 kb on + strand, within IAI47_04500at 948.170 kb on + strand, within IAI47_04500at 948.171 kb on - strand, within IAI47_04500at 948.264 kb on + strand, within IAI47_04500at 948.307 kb on - strand, within IAI47_04500

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
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944,947 + IAI47_04490 0.29 +0.5
944,993 + IAI47_04490 0.33 +0.5
944,993 + IAI47_04490 0.33 +0.8
944,993 + IAI47_04490 0.33 -2.8
944,993 + IAI47_04490 0.33 +3.0
944,994 - IAI47_04490 0.33 +0.4
945,079 - IAI47_04490 0.41 +1.7
945,079 - IAI47_04490 0.41 -2.5
945,079 - IAI47_04490 0.41 -0.2
945,079 - IAI47_04490 0.41 -1.3
945,207 + IAI47_04490 0.51 +1.3
945,208 - IAI47_04490 0.51 +1.3
945,208 - IAI47_04490 0.51 +1.5
945,208 - IAI47_04490 0.51 +1.2
945,208 - IAI47_04490 0.51 +2.1
945,208 - IAI47_04490 0.51 +0.1
945,208 - IAI47_04490 0.51 -0.4
945,217 + IAI47_04490 0.52 -0.1
945,217 + IAI47_04490 0.52 -1.8
945,217 + IAI47_04490 0.52 +1.4
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948,170 + IAI47_04500 0.68 -1.5
948,171 - IAI47_04500 0.68 -1.3
948,264 + IAI47_04500 0.76 +0.3
948,307 - IAI47_04500 0.80 -0.3

Or see this region's nucleotide sequence