Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03435 and IAI47_03440 are separated by 746 nucleotides IAI47_03440 and IAI47_03445 are separated by 503 nucleotides IAI47_03445 and IAI47_03450 are separated by 10 nucleotides
IAI47_03435: IAI47_03435 - sensor domain-containing diguanylate cyclase, at 717,499 to 718,464
_03435
IAI47_03440: IAI47_03440 - general stress protein, at 719,211 to 719,375
_03440
IAI47_03445: IAI47_03445 - ferritin-like domain-containing protein, at 719,879 to 720,361
_03445
IAI47_03450: IAI47_03450 - ferritin-like domain-containing protein, at 720,372 to 720,878
_03450
Position (kb) 719
720 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 718.217 kb on + strand, within IAI47_03435 at 718.217 kb on + strand, within IAI47_03435 at 718.218 kb on - strand, within IAI47_03435 at 718.218 kb on - strand, within IAI47_03435 at 718.296 kb on + strand, within IAI47_03435 at 718.297 kb on - strand, within IAI47_03435 at 718.346 kb on + strand, within IAI47_03435 at 718.347 kb on - strand, within IAI47_03435 at 718.347 kb on - strand, within IAI47_03435 at 718.347 kb on - strand, within IAI47_03435 at 718.368 kb on + strand at 718.399 kb on + strand at 718.399 kb on + strand at 718.482 kb on + strand at 718.483 kb on - strand at 718.483 kb on - strand at 718.483 kb on - strand at 718.512 kb on + strand at 718.512 kb on + strand at 718.513 kb on - strand at 718.523 kb on - strand at 718.529 kb on + strand at 718.551 kb on + strand at 718.608 kb on - strand at 718.613 kb on + strand at 718.614 kb on - strand at 718.644 kb on + strand at 718.644 kb on + strand at 718.645 kb on - strand at 718.645 kb on - strand at 718.645 kb on - strand at 718.648 kb on + strand at 718.648 kb on + strand at 718.648 kb on + strand at 718.649 kb on - strand at 718.649 kb on - strand at 718.743 kb on + strand at 718.847 kb on + strand at 719.066 kb on - strand at 719.139 kb on + strand at 719.140 kb on - strand at 719.140 kb on - strand at 719.168 kb on + strand at 719.168 kb on + strand at 719.191 kb on - strand at 719.191 kb on - strand at 719.210 kb on + strand at 719.210 kb on + strand at 719.210 kb on + strand at 719.210 kb on + strand at 719.211 kb on - strand at 719.211 kb on - strand at 719.211 kb on - strand at 719.303 kb on + strand, within IAI47_03440 at 719.310 kb on - strand, within IAI47_03440 at 719.354 kb on + strand, within IAI47_03440 at 719.354 kb on + strand, within IAI47_03440 at 719.354 kb on + strand, within IAI47_03440 at 719.355 kb on - strand, within IAI47_03440 at 719.355 kb on - strand, within IAI47_03440 at 719.355 kb on - strand, within IAI47_03440 at 719.383 kb on + strand at 719.438 kb on - strand at 719.470 kb on - strand at 719.470 kb on - strand at 719.470 kb on - strand at 719.860 kb on + strand at 719.874 kb on - strand at 719.874 kb on - strand at 719.878 kb on + strand at 719.879 kb on - strand at 719.930 kb on + strand, within IAI47_03445 at 719.931 kb on - strand, within IAI47_03445 at 719.949 kb on + strand, within IAI47_03445 at 719.961 kb on + strand, within IAI47_03445 at 719.962 kb on - strand, within IAI47_03445 at 719.962 kb on - strand, within IAI47_03445 at 719.962 kb on - strand, within IAI47_03445 at 719.962 kb on - strand, within IAI47_03445 at 720.011 kb on - strand, within IAI47_03445 at 720.089 kb on - strand, within IAI47_03445 at 720.212 kb on + strand, within IAI47_03445 at 720.213 kb on - strand, within IAI47_03445 at 720.213 kb on - strand, within IAI47_03445 at 720.213 kb on - strand, within IAI47_03445 at 720.213 kb on - strand, within IAI47_03445 at 720.213 kb on - strand, within IAI47_03445 at 720.227 kb on + strand, within IAI47_03445 at 720.228 kb on - strand, within IAI47_03445 at 720.228 kb on - strand, within IAI47_03445 at 720.228 kb on - strand, within IAI47_03445 at 720.228 kb on - strand, within IAI47_03445 at 720.228 kb on - strand, within IAI47_03445 at 720.228 kb on - strand, within IAI47_03445 at 720.228 kb on - strand, within IAI47_03445 at 720.228 kb on - strand, within IAI47_03445 at 720.282 kb on + strand, within IAI47_03445 at 720.292 kb on + strand, within IAI47_03445 at 720.293 kb on - strand, within IAI47_03445 at 720.293 kb on - strand, within IAI47_03445 at 720.337 kb on - strand at 720.346 kb on + strand at 720.346 kb on + strand at 720.346 kb on + strand at 720.346 kb on + strand at 720.346 kb on + strand at 720.347 kb on - strand at 720.347 kb on - strand at 720.359 kb on + strand at 720.360 kb on - strand at 720.360 kb on - strand at 720.365 kb on - strand at 720.366 kb on + strand at 720.366 kb on + strand at 720.366 kb on + strand at 720.366 kb on + strand at 720.366 kb on + strand at 720.367 kb on - strand at 720.367 kb on - strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 718,217 + IAI47_03435 0.74 +1.0 718,217 + IAI47_03435 0.74 -1.7 718,218 - IAI47_03435 0.74 -1.3 718,218 - IAI47_03435 0.74 -2.1 718,296 + IAI47_03435 0.83 +0.6 718,297 - IAI47_03435 0.83 +0.4 718,346 + IAI47_03435 0.88 -0.6 718,347 - IAI47_03435 0.88 -1.0 718,347 - IAI47_03435 0.88 +1.9 718,347 - IAI47_03435 0.88 +0.6 718,368 + -0.0 718,399 + +0.3 718,399 + -1.0 718,482 + -0.4 718,483 - -0.4 718,483 - -0.0 718,483 - -0.5 718,512 + -1.5 718,512 + +0.6 718,513 - +0.5 718,523 - -1.4 718,529 + -0.0 718,551 + +0.5 718,608 - +1.4 718,613 + -0.2 718,614 - +0.6 718,644 + -1.4 718,644 + -0.6 718,645 - -0.1 718,645 - -0.2 718,645 - +0.2 718,648 + +0.5 718,648 + +0.6 718,648 + +0.7 718,649 - -0.0 718,649 - +0.3 718,743 + -2.0 718,847 + -2.4 719,066 - +0.8 719,139 + +1.7 719,140 - +0.3 719,140 - +0.2 719,168 + -1.0 719,168 + -1.2 719,191 - -0.7 719,191 - +3.4 719,210 + -1.1 719,210 + -2.6 719,210 + +0.7 719,210 + +2.4 719,211 - -2.5 719,211 - -0.4 719,211 - +0.6 719,303 + IAI47_03440 0.56 -1.1 719,310 - IAI47_03440 0.60 +1.7 719,354 + IAI47_03440 0.87 -1.5 719,354 + IAI47_03440 0.87 -2.6 719,354 + IAI47_03440 0.87 -1.4 719,355 - IAI47_03440 0.87 -2.0 719,355 - IAI47_03440 0.87 +1.4 719,355 - IAI47_03440 0.87 -0.2 719,383 + +1.0 719,438 - -1.4 719,470 - +0.9 719,470 - -0.7 719,470 - +1.5 719,860 + -2.6 719,874 - -0.3 719,874 - +0.9 719,878 + +0.5 719,879 - -0.1 719,930 + IAI47_03445 0.11 -1.5 719,931 - IAI47_03445 0.11 -0.9 719,949 + IAI47_03445 0.14 +1.8 719,961 + IAI47_03445 0.17 -0.9 719,962 - IAI47_03445 0.17 +0.2 719,962 - IAI47_03445 0.17 +0.4 719,962 - IAI47_03445 0.17 +1.5 719,962 - IAI47_03445 0.17 +1.3 720,011 - IAI47_03445 0.27 -3.4 720,089 - IAI47_03445 0.43 -1.3 720,212 + IAI47_03445 0.69 +0.2 720,213 - IAI47_03445 0.69 -1.7 720,213 - IAI47_03445 0.69 +1.1 720,213 - IAI47_03445 0.69 -0.0 720,213 - IAI47_03445 0.69 +1.2 720,213 - IAI47_03445 0.69 -0.3 720,227 + IAI47_03445 0.72 +0.1 720,228 - IAI47_03445 0.72 -0.9 720,228 - IAI47_03445 0.72 +0.1 720,228 - IAI47_03445 0.72 -0.4 720,228 - IAI47_03445 0.72 +1.0 720,228 - IAI47_03445 0.72 +0.9 720,228 - IAI47_03445 0.72 -0.7 720,228 - IAI47_03445 0.72 +0.4 720,228 - IAI47_03445 0.72 +1.0 720,282 + IAI47_03445 0.83 -0.5 720,292 + IAI47_03445 0.86 +0.2 720,293 - IAI47_03445 0.86 +1.1 720,293 - IAI47_03445 0.86 -2.0 720,337 - -0.0 720,346 + +1.0 720,346 + +2.6 720,346 + -2.9 720,346 + -1.3 720,346 + -1.0 720,347 - -0.3 720,347 - -1.4 720,359 + +0.1 720,360 - -1.5 720,360 - -1.0 720,365 - +0.1 720,366 + +0.2 720,366 + +1.0 720,366 + -0.4 720,366 + -1.3 720,366 + -1.9 720,367 - -2.1 720,367 - +0.4 720,369 + -1.7 720,369 + -0.4 720,369 + +0.7 720,369 + +0.4 720,369 + -0.3 720,369 + +2.3 720,369 + +1.5 720,369 + +1.1 720,369 + +0.3 720,369 + -0.2 720,369 + -0.0 720,369 + -0.1 720,369 + +1.0 720,369 + +1.9 720,369 + +0.3 720,370 - -1.2 720,370 - +0.9 720,370 - +1.0 720,370 - +0.1 720,370 - +2.1 720,370 - -0.8 720,370 - +0.7 720,370 - +0.2 720,370 - +1.2 720,370 - -0.8 720,370 - +2.2 720,370 - +1.5 720,370 - +1.7 720,370 - +0.9 720,370 - -0.5 720,370 - -0.8 720,370 - +0.3 720,370 - -2.1 720,370 - -0.6
Or see this region's nucleotide sequence