Strain Fitness in Pantoea sp. MT58 around IAI47_20905

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20900 and IAI47_20905 are separated by 105 nucleotidesIAI47_20905 and IAI47_20910 are separated by 449 nucleotides IAI47_20900: IAI47_20900 - maltoporin, at 425,715 to 426,977 _20900 IAI47_20905: IAI47_20905 - PTS transporter subunit EIIB, at 427,083 to 427,400 _20905 IAI47_20910: IAI47_20910 - beta-galactosidase, at 427,850 to 429,922 _20910 Position (kb) 427 428Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 426.114 kb on + strand, within IAI47_20900at 426.115 kb on - strand, within IAI47_20900at 426.117 kb on + strand, within IAI47_20900at 426.117 kb on + strand, within IAI47_20900at 426.117 kb on + strand, within IAI47_20900at 426.117 kb on + strand, within IAI47_20900at 426.118 kb on - strand, within IAI47_20900at 426.118 kb on - strand, within IAI47_20900at 426.118 kb on - strand, within IAI47_20900at 426.118 kb on - strand, within IAI47_20900at 426.146 kb on + strand, within IAI47_20900at 426.153 kb on + strand, within IAI47_20900at 426.153 kb on + strand, within IAI47_20900at 426.154 kb on - strand, within IAI47_20900at 426.161 kb on + strand, within IAI47_20900at 426.192 kb on + strand, within IAI47_20900at 426.193 kb on - strand, within IAI47_20900at 426.287 kb on + strand, within IAI47_20900at 426.287 kb on + strand, within IAI47_20900at 426.287 kb on + strand, within IAI47_20900at 426.287 kb on + strand, within IAI47_20900at 426.287 kb on + strand, within IAI47_20900at 426.287 kb on + strand, within IAI47_20900at 426.288 kb on - strand, within IAI47_20900at 426.288 kb on - strand, within IAI47_20900at 426.288 kb on - strand, within IAI47_20900at 426.288 kb on - strand, within IAI47_20900at 426.288 kb on - strand, within IAI47_20900at 426.288 kb on - strand, within IAI47_20900at 426.288 kb on - strand, within IAI47_20900at 426.291 kb on + strand, within IAI47_20900at 426.291 kb on + strand, within IAI47_20900at 426.292 kb on - strand, within IAI47_20900at 426.292 kb on - strand, within IAI47_20900at 426.292 kb on - strand, within IAI47_20900at 426.306 kb on + strand, within IAI47_20900at 426.357 kb on + strand, within IAI47_20900at 426.358 kb on - strand, within IAI47_20900at 426.358 kb on - strand, within IAI47_20900at 426.393 kb on + strand, within IAI47_20900at 426.393 kb on + strand, within IAI47_20900at 426.394 kb on - strand, within IAI47_20900at 426.394 kb on - strand, within IAI47_20900at 426.405 kb on + strand, within IAI47_20900at 426.406 kb on - strand, within IAI47_20900at 426.406 kb on - strand, within IAI47_20900at 426.425 kb on + strand, within IAI47_20900at 426.426 kb on - strand, within IAI47_20900at 426.452 kb on + strand, within IAI47_20900at 426.453 kb on - strand, within IAI47_20900at 426.453 kb on - strand, within IAI47_20900at 426.453 kb on - strand, within IAI47_20900at 426.453 kb on - strand, within IAI47_20900at 426.453 kb on - strand, within IAI47_20900at 426.453 kb on - strand, within IAI47_20900at 426.453 kb on - strand, within IAI47_20900at 426.453 kb on - strand, within IAI47_20900at 426.453 kb on - strand, within IAI47_20900at 426.465 kb on + strand, within IAI47_20900at 426.537 kb on + strand, within IAI47_20900at 426.538 kb on - strand, within IAI47_20900at 426.538 kb on - strand, within IAI47_20900at 426.538 kb on - strand, within IAI47_20900at 426.555 kb on - strand, within IAI47_20900at 426.587 kb on + strand, within IAI47_20900at 426.656 kb on + strand, within IAI47_20900at 426.656 kb on + strand, within IAI47_20900at 426.657 kb on - strand, within IAI47_20900at 426.657 kb on - strand, within IAI47_20900at 426.680 kb on + strand, within IAI47_20900at 426.712 kb on - strand, within IAI47_20900at 426.726 kb on + strand, within IAI47_20900at 426.726 kb on + strand, within IAI47_20900at 426.726 kb on + strand, within IAI47_20900at 426.726 kb on + strand, within IAI47_20900at 426.726 kb on + strand, within IAI47_20900at 426.726 kb on + strand, within IAI47_20900at 426.726 kb on + strand, within IAI47_20900at 426.726 kb on + strand, within IAI47_20900at 426.726 kb on + strand, within IAI47_20900at 426.727 kb on + strand, within IAI47_20900at 426.727 kb on - strand, within IAI47_20900at 426.727 kb on - strand, within IAI47_20900at 426.727 kb on - strand, within IAI47_20900at 426.727 kb on - strand, within IAI47_20900at 426.727 kb on - strand, within IAI47_20900at 426.727 kb on - strand, within IAI47_20900at 426.776 kb on + strand, within IAI47_20900at 426.776 kb on + strand, within IAI47_20900at 426.777 kb on - strand, within IAI47_20900at 426.792 kb on + strand, within IAI47_20900at 426.793 kb on - strand, within IAI47_20900at 426.794 kb on + strand, within IAI47_20900at 426.794 kb on + strand, within IAI47_20900at 426.795 kb on - strand, within IAI47_20900at 426.813 kb on + strand, within IAI47_20900at 426.813 kb on + strand, within IAI47_20900at 426.813 kb on + strand, within IAI47_20900at 426.814 kb on - strand, within IAI47_20900at 426.814 kb on - strand, within IAI47_20900at 426.815 kb on + strand, within IAI47_20900at 426.816 kb on - strand, within IAI47_20900at 426.851 kb on + strandat 426.851 kb on + strandat 426.851 kb on + strandat 426.852 kb on - strandat 426.852 kb on - strandat 426.852 kb on - strandat 426.868 kb on + strandat 426.868 kb on + strandat 426.868 kb on + strandat 426.868 kb on + strandat 426.868 kb on + strandat 426.868 kb on + strandat 426.868 kb on + strandat 426.869 kb on - strandat 426.869 kb on - strandat 426.885 kb on + strandat 426.885 kb on + strandat 426.886 kb on - strandat 426.933 kb on - strandat 426.955 kb on + strandat 426.956 kb on - strandat 427.007 kb on + strandat 427.008 kb on - strandat 427.015 kb on + strandat 427.015 kb on + strandat 427.015 kb on + strandat 427.015 kb on + strandat 427.015 kb on + strandat 427.016 kb on - strandat 427.016 kb on - strandat 427.016 kb on - strandat 427.027 kb on + strandat 427.027 kb on + strandat 427.027 kb on + strandat 427.027 kb on + strandat 427.028 kb on - strandat 427.028 kb on - strandat 427.028 kb on - strandat 427.068 kb on + strandat 427.085 kb on - strandat 427.097 kb on + strandat 427.142 kb on + strand, within IAI47_20905at 427.158 kb on + strand, within IAI47_20905at 427.159 kb on - strand, within IAI47_20905at 427.159 kb on - strand, within IAI47_20905at 427.159 kb on - strand, within IAI47_20905at 427.159 kb on - strand, within IAI47_20905at 427.203 kb on + strand, within IAI47_20905at 427.204 kb on - strand, within IAI47_20905at 427.236 kb on + strand, within IAI47_20905at 427.237 kb on - strand, within IAI47_20905at 427.281 kb on - strand, within IAI47_20905at 427.281 kb on - strand, within IAI47_20905at 427.320 kb on + strand, within IAI47_20905at 427.321 kb on - strand, within IAI47_20905at 427.373 kb on - strandat 427.418 kb on - strandat 427.421 kb on - strandat 427.458 kb on + strandat 427.458 kb on + strandat 427.499 kb on + strandat 427.499 kb on + strandat 427.500 kb on - strandat 427.500 kb on - strandat 427.500 kb on - strandat 427.501 kb on + strandat 427.501 kb on + strandat 427.501 kb on + strandat 427.501 kb on + strandat 427.501 kb on + strandat 427.502 kb on - strandat 427.502 kb on - strandat 427.502 kb on - strandat 427.502 kb on - strandat 427.518 kb on + strandat 427.518 kb on + strandat 427.519 kb on - strandat 427.519 kb on - strandat 427.519 kb on - strandat 427.519 kb on - strandat 427.519 kb on - strandat 427.519 kb on - strandat 427.519 kb on - strandat 427.519 kb on - strandat 427.519 kb on - strandat 427.526 kb on + strandat 427.526 kb on + strandat 427.527 kb on - strandat 427.552 kb on + strandat 427.552 kb on + strandat 427.555 kb on + strandat 427.556 kb on - strandat 427.556 kb on - strandat 427.563 kb on - strandat 427.575 kb on + strandat 427.575 kb on + strandat 427.576 kb on - strandat 427.576 kb on - strandat 427.576 kb on - strandat 427.576 kb on - strandat 427.576 kb on - strandat 427.578 kb on + strandat 427.578 kb on + strandat 427.579 kb on - strandat 427.579 kb on - strandat 427.579 kb on - strandat 427.621 kb on + strandat 427.649 kb on - strandat 427.720 kb on + strandat 427.720 kb on + strandat 427.721 kb on - strandat 427.723 kb on + strandat 427.724 kb on - strandat 427.724 kb on - strandat 427.724 kb on - strandat 427.851 kb on + strandat 427.851 kb on + strandat 427.854 kb on - strandat 427.870 kb on + strandat 427.870 kb on + strandat 427.871 kb on - strandat 427.987 kb on + strandat 428.092 kb on + strand, within IAI47_20910at 428.092 kb on + strand, within IAI47_20910at 428.092 kb on + strand, within IAI47_20910at 428.092 kb on + strand, within IAI47_20910at 428.092 kb on + strand, within IAI47_20910at 428.093 kb on - strand, within IAI47_20910at 428.135 kb on - strand, within IAI47_20910at 428.146 kb on + strand, within IAI47_20910at 428.146 kb on + strand, within IAI47_20910at 428.146 kb on + strand, within IAI47_20910at 428.146 kb on + strand, within IAI47_20910at 428.146 kb on + strand, within IAI47_20910at 428.146 kb on + strand, within IAI47_20910at 428.146 kb on + strand, within IAI47_20910at 428.146 kb on + strand, within IAI47_20910at 428.147 kb on - strand, within IAI47_20910at 428.147 kb on - strand, within IAI47_20910at 428.147 kb on - strand, within IAI47_20910at 428.147 kb on - strand, within IAI47_20910at 428.147 kb on - strand, within IAI47_20910at 428.148 kb on + strand, within IAI47_20910at 428.148 kb on + strand, within IAI47_20910at 428.148 kb on + strand, within IAI47_20910at 428.148 kb on + strand, within IAI47_20910at 428.148 kb on + strand, within IAI47_20910at 428.148 kb on + strand, within IAI47_20910at 428.149 kb on - strand, within IAI47_20910at 428.149 kb on - strand, within IAI47_20910at 428.149 kb on - strand, within IAI47_20910at 428.158 kb on + strand, within IAI47_20910at 428.173 kb on + strand, within IAI47_20910at 428.173 kb on + strand, within IAI47_20910at 428.174 kb on - strand, within IAI47_20910at 428.174 kb on - strand, within IAI47_20910at 428.202 kb on + strand, within IAI47_20910at 428.251 kb on + strand, within IAI47_20910at 428.251 kb on + strand, within IAI47_20910at 428.251 kb on + strand, within IAI47_20910at 428.251 kb on + strandat 428.251 kb on + strand, within IAI47_20910at 428.251 kb on + strand, within IAI47_20910at 428.251 kb on + strand, within IAI47_20910at 428.251 kb on + strand, within IAI47_20910at 428.252 kb on - strand, within IAI47_20910at 428.252 kb on - strand, within IAI47_20910at 428.252 kb on - strand, within IAI47_20910at 428.252 kb on - strand, within IAI47_20910at 428.252 kb on - strand, within IAI47_20910at 428.252 kb on - strand, within IAI47_20910at 428.252 kb on - strand, within IAI47_20910

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
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426,114 + IAI47_20900 0.32 -0.4
426,115 - IAI47_20900 0.32 +1.8
426,117 + IAI47_20900 0.32 +0.1
426,117 + IAI47_20900 0.32 -0.9
426,117 + IAI47_20900 0.32 +1.5
426,117 + IAI47_20900 0.32 -0.2
426,118 - IAI47_20900 0.32 +0.4
426,118 - IAI47_20900 0.32 +0.2
426,118 - IAI47_20900 0.32 -0.2
426,118 - IAI47_20900 0.32 -0.5
426,146 + IAI47_20900 0.34 +0.5
426,153 + IAI47_20900 0.35 -0.2
426,153 + IAI47_20900 0.35 +1.5
426,154 - IAI47_20900 0.35 +1.1
426,161 + IAI47_20900 0.35 -0.2
426,192 + IAI47_20900 0.38 -0.7
426,193 - IAI47_20900 0.38 +0.1
426,287 + IAI47_20900 0.45 +0.6
426,287 + IAI47_20900 0.45 -0.5
426,287 + IAI47_20900 0.45 -0.3
426,287 + IAI47_20900 0.45 +0.3
426,287 + IAI47_20900 0.45 +1.8
426,287 + IAI47_20900 0.45 +1.1
426,288 - IAI47_20900 0.45 +0.9
426,288 - IAI47_20900 0.45 +1.1
426,288 - IAI47_20900 0.45 -0.7
426,288 - IAI47_20900 0.45 +0.2
426,288 - IAI47_20900 0.45 +0.9
426,288 - IAI47_20900 0.45 -0.1
426,288 - IAI47_20900 0.45 +1.2
426,291 + IAI47_20900 0.46 -0.5
426,291 + IAI47_20900 0.46 -2.2
426,292 - IAI47_20900 0.46 -0.5
426,292 - IAI47_20900 0.46 +0.7
426,292 - IAI47_20900 0.46 +0.0
426,306 + IAI47_20900 0.47 +0.4
426,357 + IAI47_20900 0.51 +2.1
426,358 - IAI47_20900 0.51 -1.1
426,358 - IAI47_20900 0.51 +0.8
426,393 + IAI47_20900 0.54 +0.8
426,393 + IAI47_20900 0.54 +0.6
426,394 - IAI47_20900 0.54 -0.8
426,394 - IAI47_20900 0.54 +0.9
426,405 + IAI47_20900 0.55 -0.1
426,406 - IAI47_20900 0.55 +0.5
426,406 - IAI47_20900 0.55 -0.5
426,425 + IAI47_20900 0.56 +0.8
426,426 - IAI47_20900 0.56 -0.4
426,452 + IAI47_20900 0.58 -0.4
426,453 - IAI47_20900 0.58 -0.5
426,453 - IAI47_20900 0.58 -0.5
426,453 - IAI47_20900 0.58 -1.2
426,453 - IAI47_20900 0.58 +0.2
426,453 - IAI47_20900 0.58 +1.3
426,453 - IAI47_20900 0.58 +0.7
426,453 - IAI47_20900 0.58 +1.1
426,453 - IAI47_20900 0.58 -0.5
426,453 - IAI47_20900 0.58 +1.4
426,465 + IAI47_20900 0.59 +1.3
426,537 + IAI47_20900 0.65 +0.2
426,538 - IAI47_20900 0.65 +0.4
426,538 - IAI47_20900 0.65 +0.5
426,538 - IAI47_20900 0.65 -0.9
426,555 - IAI47_20900 0.67 -0.2
426,587 + IAI47_20900 0.69 -0.1
426,656 + IAI47_20900 0.75 -0.4
426,656 + IAI47_20900 0.75 +1.2
426,657 - IAI47_20900 0.75 +1.4
426,657 - IAI47_20900 0.75 +0.7
426,680 + IAI47_20900 0.76 -1.2
426,712 - IAI47_20900 0.79 -0.1
426,726 + IAI47_20900 0.80 -0.9
426,726 + IAI47_20900 0.80 -1.2
426,726 + IAI47_20900 0.80 +0.1
426,726 + IAI47_20900 0.80 +0.7
426,726 + IAI47_20900 0.80 -0.9
426,726 + IAI47_20900 0.80 -0.2
426,726 + IAI47_20900 0.80 -0.1
426,726 + IAI47_20900 0.80 -1.1
426,726 + IAI47_20900 0.80 +1.0
426,727 + IAI47_20900 0.80 -0.6
426,727 - IAI47_20900 0.80 +0.6
426,727 - IAI47_20900 0.80 +0.0
426,727 - IAI47_20900 0.80 -0.2
426,727 - IAI47_20900 0.80 -1.1
426,727 - IAI47_20900 0.80 +0.4
426,727 - IAI47_20900 0.80 +0.2
426,776 + IAI47_20900 0.84 +0.9
426,776 + IAI47_20900 0.84 +0.9
426,777 - IAI47_20900 0.84 +0.8
426,792 + IAI47_20900 0.85 -1.4
426,793 - IAI47_20900 0.85 -2.3
426,794 + IAI47_20900 0.85 -0.5
426,794 + IAI47_20900 0.85 -0.7
426,795 - IAI47_20900 0.86 +2.2
426,813 + IAI47_20900 0.87 +1.2
426,813 + IAI47_20900 0.87 -1.7
426,813 + IAI47_20900 0.87 -1.3
426,814 - IAI47_20900 0.87 +0.2
426,814 - IAI47_20900 0.87 -0.7
426,815 + IAI47_20900 0.87 -2.0
426,816 - IAI47_20900 0.87 +0.1
426,851 + -0.6
426,851 + -0.4
426,851 + -1.8
426,852 - +2.1
426,852 - -0.2
426,852 - +0.2
426,868 + -0.1
426,868 + -0.9
426,868 + +0.3
426,868 + -1.0
426,868 + -0.4
426,868 + -0.7
426,868 + -0.2
426,869 - -1.6
426,869 - +0.6
426,885 + -0.8
426,885 + +0.3
426,886 - -1.9
426,933 - -0.5
426,955 + -0.1
426,956 - -0.5
427,007 + -0.2
427,008 - -0.4
427,015 + +1.2
427,015 + +0.1
427,015 + +0.6
427,015 + -0.8
427,015 + -0.0
427,016 - -0.5
427,016 - -1.8
427,016 - +1.2
427,027 + +0.3
427,027 + +0.5
427,027 + +0.5
427,027 + +0.2
427,028 - +0.7
427,028 - -0.5
427,028 - +2.7
427,068 + -1.4
427,085 - +0.3
427,097 + +1.5
427,142 + IAI47_20905 0.19 +0.2
427,158 + IAI47_20905 0.24 -0.7
427,159 - IAI47_20905 0.24 +0.6
427,159 - IAI47_20905 0.24 -1.5
427,159 - IAI47_20905 0.24 +0.4
427,159 - IAI47_20905 0.24 +0.2
427,203 + IAI47_20905 0.38 -0.8
427,204 - IAI47_20905 0.38 +0.2
427,236 + IAI47_20905 0.48 -0.5
427,237 - IAI47_20905 0.48 +1.1
427,281 - IAI47_20905 0.62 -0.4
427,281 - IAI47_20905 0.62 -0.6
427,320 + IAI47_20905 0.75 +2.2
427,321 - IAI47_20905 0.75 -2.4
427,373 - +0.5
427,418 - -0.3
427,421 - -0.6
427,458 + -0.3
427,458 + -0.7
427,499 + +1.0
427,499 + -0.3
427,500 - +0.1
427,500 - +0.6
427,500 - +0.6
427,501 + +1.8
427,501 + -0.1
427,501 + -1.0
427,501 + +0.1
427,501 + -0.4
427,502 - +1.3
427,502 - -0.2
427,502 - -1.2
427,502 - +0.9
427,518 + +0.8
427,518 + +0.1
427,519 - +1.0
427,519 - -0.9
427,519 - +1.3
427,519 - -2.8
427,519 - +0.6
427,519 - -0.6
427,519 - +0.8
427,519 - +0.1
427,519 - +2.2
427,526 + +1.2
427,526 + +0.9
427,527 - -0.8
427,552 + +0.5
427,552 + -0.9
427,555 + -1.2
427,556 - +0.4
427,556 - -1.9
427,563 - -0.4
427,575 + +1.1
427,575 + -0.2
427,576 - +0.4
427,576 - +0.2
427,576 - +1.4
427,576 - -1.8
427,576 - -1.2
427,578 + +1.0
427,578 + -0.8
427,579 - +0.4
427,579 - +0.2
427,579 - -0.8
427,621 + -0.9
427,649 - +2.5
427,720 + +0.3
427,720 + -2.4
427,721 - +1.6
427,723 + +0.1
427,724 - -1.4
427,724 - -0.7
427,724 - +0.5
427,851 + +1.2
427,851 + -0.2
427,854 - +0.6
427,870 + -0.2
427,870 + -1.4
427,871 - -0.9
427,987 + -0.2
428,092 + IAI47_20910 0.12 -0.5
428,092 + IAI47_20910 0.12 -0.3
428,092 + IAI47_20910 0.12 +2.1
428,092 + IAI47_20910 0.12 +0.6
428,092 + IAI47_20910 0.12 +2.0
428,093 - IAI47_20910 0.12 +1.0
428,135 - IAI47_20910 0.14 +1.5
428,146 + IAI47_20910 0.14 +1.5
428,146 + IAI47_20910 0.14 +0.3
428,146 + IAI47_20910 0.14 +0.5
428,146 + IAI47_20910 0.14 +0.7
428,146 + IAI47_20910 0.14 +1.6
428,146 + IAI47_20910 0.14 -0.1
428,146 + IAI47_20910 0.14 +0.7
428,146 + IAI47_20910 0.14 +0.2
428,147 - IAI47_20910 0.14 -0.3
428,147 - IAI47_20910 0.14 -1.4
428,147 - IAI47_20910 0.14 +0.7
428,147 - IAI47_20910 0.14 +0.6
428,147 - IAI47_20910 0.14 -2.8
428,148 + IAI47_20910 0.14 -0.7
428,148 + IAI47_20910 0.14 +1.5
428,148 + IAI47_20910 0.14 +0.4
428,148 + IAI47_20910 0.14 +1.0
428,148 + IAI47_20910 0.14 +1.4
428,148 + IAI47_20910 0.14 +0.0
428,149 - IAI47_20910 0.14 +1.0
428,149 - IAI47_20910 0.14 -0.1
428,149 - IAI47_20910 0.14 -0.2
428,158 + IAI47_20910 0.15 -2.9
428,173 + IAI47_20910 0.16 -1.4
428,173 + IAI47_20910 0.16 -1.1
428,174 - IAI47_20910 0.16 +0.4
428,174 - IAI47_20910 0.16 -0.2
428,202 + IAI47_20910 0.17 -0.6
428,251 + IAI47_20910 0.19 +0.0
428,251 + IAI47_20910 0.19 -1.2
428,251 + IAI47_20910 0.19 +0.7
428,251 + -0.6
428,251 + IAI47_20910 0.19 +1.0
428,251 + IAI47_20910 0.19 +0.3
428,251 + IAI47_20910 0.19 -0.1
428,251 + IAI47_20910 0.19 +0.8
428,252 - IAI47_20910 0.19 -0.9
428,252 - IAI47_20910 0.19 +0.6
428,252 - IAI47_20910 0.19 -2.5
428,252 - IAI47_20910 0.19 +1.0
428,252 - IAI47_20910 0.19 -1.2
428,252 - IAI47_20910 0.19 -1.1
428,252 - IAI47_20910 0.19 -0.1

Or see this region's nucleotide sequence