Strain Fitness in Pantoea sp. MT58 around IAI47_17005

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,605,998	-				+1.1
3,606,044	-				-1.4
3,606,127	-		IAI47_17000	0.17	-3.5
3,606,127	-		IAI47_17000	0.17	-1.3
3,606,127	-		IAI47_17000	0.17	-0.4
3,606,131	-		IAI47_17000	0.18	-0.1
3,606,131	-		IAI47_17000	0.18	-0.7
3,606,134	-		IAI47_17000	0.18	-1.5
3,606,134	-		IAI47_17000	0.18	-1.5
3,606,134	-		IAI47_17000	0.18	-1.2
3,606,134	-		IAI47_17000	0.18	-2.7
3,606,134	-		IAI47_17000	0.18	+0.1
3,606,134	-		IAI47_17000	0.18	-1.3
3,606,134	-		IAI47_17000	0.18	-1.9
3,606,134	-		IAI47_17000	0.18	-2.6
3,606,134	-		IAI47_17000	0.18	-1.5
3,606,134	-		IAI47_17000	0.18	-1.4
3,606,142	-		IAI47_17000	0.19	-2.7
3,606,142	-		IAI47_17000	0.19	-2.8
3,606,146	-		IAI47_17000	0.19	-1.3
3,606,146	-		IAI47_17000	0.19	-1.0
3,606,186	-		IAI47_17000	0.24	-1.7
3,606,186	-		IAI47_17000	0.24	-0.8
3,606,234	-		IAI47_17000	0.29	-3.0
3,606,234	-		IAI47_17000	0.29	-1.7
3,606,234	-		IAI47_17000	0.29	-1.3
3,606,234	-		IAI47_17000	0.29	-1.7
3,606,234	-		IAI47_17000	0.29	-1.4
3,606,234	-		IAI47_17000	0.29	-3.9
3,606,234	-		IAI47_17000	0.29	-0.9
3,606,234	-		IAI47_17000	0.29	+0.1
3,606,245	-		IAI47_17000	0.30	-0.7
3,606,245	-		IAI47_17000	0.30	-0.7
3,606,245	-		IAI47_17000	0.30	-3.0
3,606,245	-		IAI47_17000	0.30	-2.1
3,606,245	-		IAI47_17000	0.30	-2.0
3,606,258	-		IAI47_17000	0.32	-2.8
3,606,258	-		IAI47_17000	0.32	-2.3
3,606,258	-		IAI47_17000	0.32	-1.6
3,606,258	-		IAI47_17000	0.32	-3.1
3,606,258	-		IAI47_17000	0.32	-2.4
3,606,258	-		IAI47_17000	0.32	-1.6
3,606,258	-		IAI47_17000	0.32	-1.5
3,606,258	-		IAI47_17000	0.32	-2.8
3,606,258	-		IAI47_17000	0.32	-1.1
3,606,258	-		IAI47_17000	0.32	-3.2
3,606,350	-		IAI47_17000	0.42	-0.1
3,606,350	-		IAI47_17000	0.42	-1.4
3,606,378	-		IAI47_17000	0.45	-3.1
3,606,425	-		IAI47_17000	0.51	-2.0
3,606,425	-		IAI47_17000	0.51	-1.8
3,606,425	-		IAI47_17000	0.51	-3.2
3,606,440	-		IAI47_17000	0.52	-3.6
3,606,460	-		IAI47_17000	0.55	-1.1
3,606,470	-		IAI47_17000	0.56	-2.1
3,606,470	-		IAI47_17000	0.56	+0.5
3,606,470	-		IAI47_17000	0.56	-1.9
3,606,470	-		IAI47_17000	0.56	-1.5
3,606,470	-		IAI47_17000	0.56	-2.7
3,606,470	-		IAI47_17000	0.56	-2.1
3,606,470	-		IAI47_17000	0.56	-2.1
3,606,470	-		IAI47_17000	0.56	-3.3
3,606,470	-		IAI47_17000	0.56	-0.3
3,606,470	-		IAI47_17000	0.56	-1.4
3,606,476	-		IAI47_17000	0.56	-2.6
3,606,476	-		IAI47_17000	0.56	-0.7
3,606,476	-		IAI47_17000	0.56	-3.1
3,606,476	-		IAI47_17000	0.56	-1.5
3,606,496	-		IAI47_17000	0.59	-2.3
3,606,515	-		IAI47_17000	0.61	-2.9
3,606,515	-		IAI47_17000	0.61	-3.0
3,606,544	-		IAI47_17000	0.64	-2.2
3,606,548	-		IAI47_17000	0.65	-3.8
3,606,548	-		IAI47_17000	0.65	-2.4
3,606,548	-		IAI47_17000	0.65	-3.3
3,606,548	-		IAI47_17000	0.65	-1.0
3,606,548	-		IAI47_17000	0.65	-1.1
3,606,550	-		IAI47_17000	0.65	-2.4
3,606,550	-		IAI47_17000	0.65	-1.8
3,606,550	-		IAI47_17000	0.65	-1.8
3,606,550	-		IAI47_17000	0.65	-2.9
3,606,550	-		IAI47_17000	0.65	-3.1
3,606,556	-		IAI47_17000	0.66	-2.1
3,606,556	-		IAI47_17000	0.66	-1.9
3,606,560	-		IAI47_17000	0.66	-1.5
3,606,560	-		IAI47_17000	0.66	-0.6
3,606,564	-		IAI47_17000	0.66	-1.8
3,606,564	-		IAI47_17000	0.66	-1.6
3,606,579	-		IAI47_17000	0.68	-0.2
3,606,579	-		IAI47_17000	0.68	-3.4
3,606,579	-		IAI47_17000	0.68	-2.4
3,606,579	-		IAI47_17000	0.68	-1.7
3,606,591	-		IAI47_17000	0.69	-1.4
3,606,642	-		IAI47_17000	0.75	-2.9
3,606,642	-		IAI47_17000	0.75	-2.4
3,606,642	-		IAI47_17000	0.75	-3.0
3,606,646	+		IAI47_17000	0.76	-3.8
3,606,646	+		IAI47_17000	0.76	-1.7
3,606,647	-		IAI47_17000	0.76	-2.5
3,606,664	+		IAI47_17000	0.78	-1.2
3,606,665	-		IAI47_17000	0.78	+0.0
3,606,665	-		IAI47_17000	0.78	-1.4
3,606,667	-		IAI47_17000	0.78	-3.6
3,606,667	-		IAI47_17000	0.78	+0.6
3,606,667	-		IAI47_17000	0.78	-2.5
3,606,667	-		IAI47_17000	0.78	-2.4
3,606,733	-		IAI47_17000	0.86	-3.0
3,606,759	+		IAI47_17000	0.88	-2.7
3,606,759	+		IAI47_17000	0.88	-1.7
3,606,760	-		IAI47_17000	0.89	-2.8
3,606,785	+				-3.6
3,606,785	+				-1.5
3,606,786	-				-2.1
3,606,786	-				-3.8
3,606,786	-				-3.1
3,606,862	+				-3.2
3,606,942	+				-2.6
3,606,943	-				-0.2
3,606,943	-				-1.5
3,606,991	+				-2.2
3,606,992	-				+0.4
3,607,008	-				-1.1
3,607,008	-				-0.6
3,607,008	-				-0.6
3,607,008	-				-1.8
3,607,008	-				-0.5
3,607,008	-				-2.8
3,607,041	-				-0.5
3,607,041	-				-1.3
3,607,041	-				-1.5
3,607,041	-				-2.7
3,607,072	-				-0.7
3,607,072	-				-0.3
3,607,157	+				-0.5
3,607,253	-		IAI47_17005	0.12	-0.1
3,607,341	-		IAI47_17005	0.16	-1.7
3,607,415	+		IAI47_17005	0.20	-0.1
3,607,459	+		IAI47_17005	0.22	-1.2
3,607,459	+		IAI47_17005	0.22	-1.0
3,607,459	+		IAI47_17005	0.22	-0.9
3,607,459	+		IAI47_17005	0.22	-0.5
3,607,459	+		IAI47_17005	0.22	-0.6
3,607,460	-		IAI47_17005	0.22	-0.3
3,607,460	-		IAI47_17005	0.22	+0.1
3,607,460	-		IAI47_17005	0.22	-0.5
3,607,460	-		IAI47_17005	0.22	-0.9
3,607,460	-		IAI47_17005	0.22	-0.1
3,607,460	-		IAI47_17005	0.22	+0.0
3,607,460	-		IAI47_17005	0.22	-1.3
3,607,460	-		IAI47_17005	0.22	-0.0
3,607,623	-		IAI47_17005	0.30	+1.1
3,607,642	-		IAI47_17005	0.31	-0.5
3,607,846	-		IAI47_17005	0.40	+0.1
3,607,846	-		IAI47_17005	0.40	-0.1
3,607,846	-				+0.4
3,607,846	-		IAI47_17005	0.40	+0.1
3,607,858	+		IAI47_17005	0.41	-1.6
3,607,891	-		IAI47_17005	0.42	+1.5
3,607,938	-		IAI47_17005	0.44	+0.1
3,607,947	+		IAI47_17005	0.45	+1.7
3,607,947	+		IAI47_17005	0.45	+0.1
3,607,947	+		IAI47_17005	0.45	+0.7
3,607,948	-		IAI47_17005	0.45	-0.3
3,607,948	-		IAI47_17005	0.45	+0.7
3,607,948	-		IAI47_17005	0.45	-0.1
3,607,948	-		IAI47_17005	0.45	-1.8
3,607,948	-		IAI47_17005	0.45	+0.1
3,607,948	-		IAI47_17005	0.45	+0.4
3,607,948	-		IAI47_17005	0.45	-1.4
3,607,948	-		IAI47_17005	0.45	-0.3
3,607,948	-		IAI47_17005	0.45	+0.4
3,607,948	-		IAI47_17005	0.45	-0.5
3,607,948	-		IAI47_17005	0.45	-0.3
3,607,988	-		IAI47_17005	0.47	-0.9
3,607,988	-		IAI47_17005	0.47	-1.5
3,607,988	-		IAI47_17005	0.47	-0.6
3,608,009	+		IAI47_17005	0.48	-0.6
3,608,010	-		IAI47_17005	0.48	-0.5
3,608,010	-		IAI47_17005	0.48	-0.3
3,608,054	+		IAI47_17005	0.50	-0.2
3,608,055	-		IAI47_17005	0.50	+2.1
3,608,055	-		IAI47_17005	0.50	-0.1
3,608,118	-		IAI47_17005	0.53	+1.1
3,608,118	-		IAI47_17005	0.53	+0.4
3,608,118	-		IAI47_17005	0.53	-0.6
3,608,128	-		IAI47_17005	0.53	-1.2
3,608,135	+		IAI47_17005	0.54	-0.1
3,608,160	-		IAI47_17005	0.55	-0.6
3,608,207	+		IAI47_17005	0.57	-1.5
3,608,232	-		IAI47_17005	0.58	+0.7
3,608,306	+		IAI47_17005	0.62	-0.1
3,608,583	-		IAI47_17005	0.75	+1.1
3,608,644	+		IAI47_17005	0.77	-0.5
3,608,645	-		IAI47_17005	0.77	+1.1
3,608,645	-		IAI47_17005	0.77	-0.3
3,608,645	-		IAI47_17005	0.77	-0.9
3,608,645	-		IAI47_17005	0.77	-0.1
3,608,657	+		IAI47_17005	0.78	-0.2
3,608,657	+		IAI47_17005	0.78	-0.1
3,608,658	-		IAI47_17005	0.78	-0.3
3,608,659	+		IAI47_17005	0.78	+0.1
3,608,659	+		IAI47_17005	0.78	+0.9
3,608,660	-		IAI47_17005	0.78	+1.7
3,608,660	-		IAI47_17005	0.78	+0.4
3,608,665	-		IAI47_17005	0.78	-0.7
3,608,665	-		IAI47_17005	0.78	-0.6
3,608,786	+		IAI47_17005	0.84	-0.9
3,608,801	+		IAI47_17005	0.85	-1.0
3,608,802	-		IAI47_17005	0.85	+2.1
3,608,910	-		IAI47_17005	0.90	-1.7
3,608,924	-				-3.1
3,608,924	-				-2.2
3,608,927	+				-1.4
3,608,927	+				+1.1
3,608,928	-				-1.8
3,608,928	-				-0.7
3,608,938	+				-0.1
3,608,939	-				+2.1
3,608,976	-				-0.3
3,608,991	+				+0.4
3,608,992	-				-1.2
3,608,992	-				+0.1
3,608,992	-				-1.0
3,608,992	-				-0.1
3,609,015	-				+0.4
3,609,015	-				-0.7
3,609,033	+				-0.9
3,609,034	-				+0.7
3,609,034	-				-1.0
3,609,084	-				-1.8
3,609,094	+				-0.5
3,609,095	-				+1.1
3,609,139	-				-1.1
3,609,139	-				+1.1
3,609,155	+				+0.4
3,609,156	-				-0.5
3,609,156	-				+0.1
3,609,177	-				+1.5
3,609,177	-				-2.5
3,609,177	-				+0.5
3,609,177	-				-0.2
3,609,177	-				-1.7
3,609,177	-				-3.0
3,609,177	-				-1.7
3,609,177	-				-0.6
3,609,205	-				+3.0
3,609,205	-				+0.1
3,609,205	-				-0.4
3,609,246	-				-0.1
3,609,280	+				-0.7
3,609,281	-				-2.5
3,609,281	-				+0.5
3,609,281	-				-1.3
3,609,290	+				+0.1
3,609,291	-				+2.3
3,609,291	-				+0.5
3,609,291	-				+2.5
3,609,291	-				-1.4
3,609,291	-				-1.4
3,609,291	-				-0.9
3,609,291	-				+0.0
3,609,291	-				-1.2
3,609,340	-				-0.1
3,609,380	-				+0.7
3,609,380	-				-0.6
3,609,407	+				-0.8
3,609,407	+				-0.9
3,609,407	+				-0.3
3,609,407	+				-0.1
3,609,408	-				+1.2
3,609,408	-				+0.2
3,609,408	-				+0.7
3,609,408	-				+0.9
3,609,408	-				+0.5
3,609,408	-				+1.0
3,609,748	-				-0.3
3,609,748	-				+0.7
3,609,838	+				-1.0
3,609,838	+				-0.2
3,609,838	+				-1.8
3,609,839	-				-0.6
3,609,839	-				+0.7
3,609,839	-				+1.2
3,609,839	-				+1.9
3,609,858	+				+0.3
3,609,859	-				+0.6
3,609,859	-				-0.1
3,609,933	+		IAI47_17015	0.10	-1.3
3,609,962	+		IAI47_17015	0.13	-0.8
3,609,962	+		IAI47_17015	0.13	-0.1
3,609,963	-		IAI47_17015	0.13	-0.7
3,609,963	-		IAI47_17015	0.13	+0.8
3,609,972	+		IAI47_17015	0.14	+0.4
3,609,972	+		IAI47_17015	0.14	-0.6
3,609,972	+		IAI47_17015	0.14	-0.7
3,609,972	+		IAI47_17015	0.14	+0.0
3,609,972	+		IAI47_17015	0.14	+0.0
3,610,017	-		IAI47_17015	0.19	-0.5
3,610,122	-		IAI47_17015	0.30	+1.7
3,610,122	-		IAI47_17015	0.30	-1.1