Strain Fitness in Pantoea sp. MT58 around IAI47_03585

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_03580 and IAI47_03585 overlap by 8 nucleotidesIAI47_03585 and IAI47_03590 are separated by 21 nucleotidesIAI47_03590 and IAI47_03595 are separated by 12 nucleotides IAI47_03580: IAI47_03580 - radical SAM family heme chaperone HemW, at 747,276 to 748,415 _03580 IAI47_03585: IAI47_03585 - XTP/dITP diphosphatase, at 748,408 to 749,001 _03585 IAI47_03590: IAI47_03590 - YggT family protein, at 749,023 to 749,577 _03590 IAI47_03595: IAI47_03595 - YggS family pyridoxal phosphate-dependent enzyme, at 749,590 to 750,297 _03595 Position (kb) 748 749 750Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 747.427 kb on + strand, within IAI47_03580at 747.427 kb on + strand, within IAI47_03580at 747.479 kb on + strand, within IAI47_03580at 747.479 kb on + strand, within IAI47_03580at 747.480 kb on - strand, within IAI47_03580at 747.518 kb on - strand, within IAI47_03580at 747.518 kb on - strand, within IAI47_03580at 747.532 kb on + strand, within IAI47_03580at 747.532 kb on + strand, within IAI47_03580at 747.532 kb on + strand, within IAI47_03580at 747.533 kb on - strand, within IAI47_03580at 747.546 kb on - strand, within IAI47_03580at 747.655 kb on + strand, within IAI47_03580at 747.655 kb on + strand, within IAI47_03580at 747.655 kb on + strand, within IAI47_03580at 747.655 kb on + strand, within IAI47_03580at 747.655 kb on + strand, within IAI47_03580at 747.655 kb on + strand, within IAI47_03580at 747.656 kb on - strand, within IAI47_03580at 747.656 kb on - strand, within IAI47_03580at 747.656 kb on - strand, within IAI47_03580at 747.656 kb on - strand, within IAI47_03580at 747.709 kb on + strand, within IAI47_03580at 747.709 kb on + strand, within IAI47_03580at 747.709 kb on + strand, within IAI47_03580at 747.709 kb on + strand, within IAI47_03580at 747.709 kb on + strand, within IAI47_03580at 747.710 kb on - strand, within IAI47_03580at 747.710 kb on - strand, within IAI47_03580at 747.710 kb on - strand, within IAI47_03580at 747.710 kb on - strand, within IAI47_03580at 747.710 kb on - strand, within IAI47_03580at 747.758 kb on + strand, within IAI47_03580at 747.758 kb on + strand, within IAI47_03580at 747.759 kb on - strand, within IAI47_03580at 747.759 kb on - strand, within IAI47_03580at 747.835 kb on + strand, within IAI47_03580at 747.835 kb on + strand, within IAI47_03580at 747.876 kb on + strand, within IAI47_03580at 747.876 kb on + strand, within IAI47_03580at 747.876 kb on + strand, within IAI47_03580at 747.876 kb on + strand, within IAI47_03580at 747.876 kb on + strand, within IAI47_03580at 747.877 kb on - strand, within IAI47_03580at 747.877 kb on - strand, within IAI47_03580at 747.877 kb on - strandat 747.877 kb on - strand, within IAI47_03580at 747.877 kb on - strand, within IAI47_03580at 747.936 kb on - strand, within IAI47_03580at 747.936 kb on - strand, within IAI47_03580at 748.055 kb on + strand, within IAI47_03580at 748.055 kb on + strand, within IAI47_03580at 748.056 kb on - strand, within IAI47_03580at 748.056 kb on - strand, within IAI47_03580at 748.061 kb on + strand, within IAI47_03580at 748.061 kb on + strand, within IAI47_03580at 748.064 kb on + strand, within IAI47_03580at 748.064 kb on + strand, within IAI47_03580at 748.065 kb on - strand, within IAI47_03580at 748.078 kb on + strand, within IAI47_03580at 748.296 kb on + strand, within IAI47_03580at 748.296 kb on + strand, within IAI47_03580at 748.296 kb on + strand, within IAI47_03580at 748.296 kb on + strand, within IAI47_03580at 748.296 kb on + strand, within IAI47_03580at 748.296 kb on + strand, within IAI47_03580at 748.296 kb on + strand, within IAI47_03580at 748.296 kb on + strand, within IAI47_03580at 748.296 kb on + strand, within IAI47_03580at 748.296 kb on + strand, within IAI47_03580at 748.296 kb on + strand, within IAI47_03580at 748.296 kb on + strand, within IAI47_03580at 748.297 kb on - strand, within IAI47_03580at 748.297 kb on - strand, within IAI47_03580at 748.297 kb on - strand, within IAI47_03580at 748.297 kb on - strand, within IAI47_03580at 748.297 kb on - strand, within IAI47_03580at 748.300 kb on + strand, within IAI47_03580at 748.300 kb on + strand, within IAI47_03580at 748.300 kb on + strand, within IAI47_03580at 748.301 kb on - strand, within IAI47_03580at 748.301 kb on - strand, within IAI47_03580at 748.301 kb on - strand, within IAI47_03580at 748.301 kb on - strand, within IAI47_03580at 748.301 kb on - strand, within IAI47_03580at 748.327 kb on - strandat 748.327 kb on - strandat 748.340 kb on + strandat 748.351 kb on + strandat 748.365 kb on + strandat 748.365 kb on + strandat 748.365 kb on + strandat 748.385 kb on + strandat 748.386 kb on - strandat 748.387 kb on + strandat 748.387 kb on + strandat 748.387 kb on + strandat 748.387 kb on + strandat 748.387 kb on + strandat 748.387 kb on + strandat 748.387 kb on + strandat 748.388 kb on - strandat 748.388 kb on - strandat 748.388 kb on - strandat 748.388 kb on - strandat 748.388 kb on - strandat 748.388 kb on - strandat 748.388 kb on - strandat 748.388 kb on - strandat 748.388 kb on - strandat 748.388 kb on - strandat 748.388 kb on - strandat 748.388 kb on - strandat 748.388 kb on - strandat 748.395 kb on + strandat 748.395 kb on + strandat 748.395 kb on + strandat 748.396 kb on - strandat 748.409 kb on + strandat 748.410 kb on - strandat 748.410 kb on - strandat 748.410 kb on - strandat 748.416 kb on + strandat 748.416 kb on + strandat 748.416 kb on + strandat 748.416 kb on + strandat 748.416 kb on + strandat 748.416 kb on + strandat 748.417 kb on - strandat 748.417 kb on - strandat 748.417 kb on - strandat 748.417 kb on - strandat 748.417 kb on - strandat 748.417 kb on - strandat 748.449 kb on + strandat 748.504 kb on - strand, within IAI47_03585at 748.504 kb on - strand, within IAI47_03585at 748.536 kb on - strand, within IAI47_03585at 748.536 kb on - strand, within IAI47_03585at 748.631 kb on + strand, within IAI47_03585at 748.631 kb on + strand, within IAI47_03585at 748.631 kb on + strand, within IAI47_03585at 748.632 kb on - strand, within IAI47_03585at 748.632 kb on - strand, within IAI47_03585at 748.632 kb on - strand, within IAI47_03585at 748.740 kb on - strand, within IAI47_03585at 748.751 kb on + strand, within IAI47_03585at 748.752 kb on - strand, within IAI47_03585at 748.752 kb on - strand, within IAI47_03585at 748.752 kb on - strand, within IAI47_03585at 748.752 kb on - strand, within IAI47_03585at 748.752 kb on - strand, within IAI47_03585at 748.752 kb on - strand, within IAI47_03585at 748.864 kb on - strand, within IAI47_03585at 748.921 kb on - strand, within IAI47_03585at 748.942 kb on + strandat 748.942 kb on + strandat 748.943 kb on - strandat 749.002 kb on - strandat 749.002 kb on - strandat 749.024 kb on + strandat 749.025 kb on - strandat 749.025 kb on - strandat 749.033 kb on + strandat 749.033 kb on + strandat 749.033 kb on + strandat 749.078 kb on + strandat 749.078 kb on + strandat 749.078 kb on + strandat 749.078 kb on + strandat 749.079 kb on - strand, within IAI47_03590at 749.079 kb on - strand, within IAI47_03590at 749.079 kb on - strand, within IAI47_03590at 749.079 kb on - strand, within IAI47_03590at 749.079 kb on - strand, within IAI47_03590at 749.079 kb on - strand, within IAI47_03590at 749.079 kb on - strand, within IAI47_03590at 749.079 kb on - strand, within IAI47_03590at 749.137 kb on - strand, within IAI47_03590at 749.183 kb on + strand, within IAI47_03590at 749.183 kb on + strand, within IAI47_03590at 749.183 kb on + strand, within IAI47_03590at 749.209 kb on - strand, within IAI47_03590at 749.230 kb on + strand, within IAI47_03590at 749.230 kb on + strand, within IAI47_03590at 749.230 kb on + strand, within IAI47_03590at 749.230 kb on + strand, within IAI47_03590at 749.230 kb on + strand, within IAI47_03590at 749.231 kb on - strand, within IAI47_03590at 749.231 kb on - strand, within IAI47_03590at 749.255 kb on + strand, within IAI47_03590at 749.256 kb on - strand, within IAI47_03590at 749.256 kb on - strand, within IAI47_03590at 749.268 kb on + strand, within IAI47_03590at 749.298 kb on + strand, within IAI47_03590at 749.299 kb on - strand, within IAI47_03590at 749.332 kb on + strand, within IAI47_03590at 749.332 kb on + strand, within IAI47_03590at 749.332 kb on + strand, within IAI47_03590at 749.333 kb on - strand, within IAI47_03590at 749.338 kb on + strand, within IAI47_03590at 749.339 kb on - strand, within IAI47_03590at 749.339 kb on - strand, within IAI47_03590at 749.391 kb on + strand, within IAI47_03590at 749.391 kb on + strand, within IAI47_03590at 749.391 kb on + strandat 749.392 kb on - strand, within IAI47_03590at 749.416 kb on + strand, within IAI47_03590at 749.417 kb on - strand, within IAI47_03590at 749.417 kb on - strand, within IAI47_03590at 749.480 kb on + strand, within IAI47_03590at 749.515 kb on + strand, within IAI47_03590at 749.515 kb on + strand, within IAI47_03590at 749.516 kb on - strand, within IAI47_03590at 749.516 kb on - strand, within IAI47_03590at 749.534 kb on + strandat 749.534 kb on + strandat 749.554 kb on + strandat 749.572 kb on + strandat 749.572 kb on + strandat 749.589 kb on - strandat 749.589 kb on - strandat 749.589 kb on - strandat 749.591 kb on + strandat 749.591 kb on + strandat 749.591 kb on + strandat 749.592 kb on - strandat 749.592 kb on - strandat 749.592 kb on - strandat 749.592 kb on - strandat 749.592 kb on - strandat 749.592 kb on - strandat 749.612 kb on + strandat 749.613 kb on - strandat 749.643 kb on + strandat 749.644 kb on - strandat 749.656 kb on - strandat 749.709 kb on + strand, within IAI47_03595at 749.710 kb on - strand, within IAI47_03595at 749.710 kb on - strand, within IAI47_03595at 749.723 kb on + strand, within IAI47_03595at 749.723 kb on + strand, within IAI47_03595at 749.724 kb on - strand, within IAI47_03595at 749.724 kb on - strand, within IAI47_03595at 749.724 kb on - strand, within IAI47_03595at 749.724 kb on - strand, within IAI47_03595at 749.786 kb on + strand, within IAI47_03595at 749.913 kb on + strand, within IAI47_03595at 749.913 kb on + strand, within IAI47_03595at 749.913 kb on + strand, within IAI47_03595at 749.913 kb on + strand, within IAI47_03595at 749.913 kb on + strand, within IAI47_03595at 749.913 kb on + strand, within IAI47_03595at 749.914 kb on - strand, within IAI47_03595at 749.914 kb on - strand, within IAI47_03595at 749.914 kb on - strand, within IAI47_03595at 749.918 kb on - strand, within IAI47_03595at 749.918 kb on - strand, within IAI47_03595at 749.927 kb on - strand, within IAI47_03595at 749.927 kb on - strand, within IAI47_03595at 749.982 kb on + strand, within IAI47_03595at 749.983 kb on - strand, within IAI47_03595

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
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747,427 + IAI47_03580 0.13 -1.4
747,427 + IAI47_03580 0.13 -1.1
747,479 + IAI47_03580 0.18 -1.4
747,479 + IAI47_03580 0.18 -0.2
747,480 - IAI47_03580 0.18 +0.2
747,518 - IAI47_03580 0.21 -1.0
747,518 - IAI47_03580 0.21 -1.0
747,532 + IAI47_03580 0.22 +0.2
747,532 + IAI47_03580 0.22 -0.9
747,532 + IAI47_03580 0.22 +0.8
747,533 - IAI47_03580 0.23 +0.5
747,546 - IAI47_03580 0.24 +1.2
747,655 + IAI47_03580 0.33 -1.6
747,655 + IAI47_03580 0.33 -0.1
747,655 + IAI47_03580 0.33 +0.3
747,655 + IAI47_03580 0.33 -0.5
747,655 + IAI47_03580 0.33 -0.2
747,655 + IAI47_03580 0.33 -1.1
747,656 - IAI47_03580 0.33 +2.0
747,656 - IAI47_03580 0.33 -0.1
747,656 - IAI47_03580 0.33 -0.8
747,656 - IAI47_03580 0.33 -1.0
747,709 + IAI47_03580 0.38 +0.3
747,709 + IAI47_03580 0.38 +1.0
747,709 + IAI47_03580 0.38 -0.4
747,709 + IAI47_03580 0.38 +0.4
747,709 + IAI47_03580 0.38 +0.3
747,710 - IAI47_03580 0.38 -0.4
747,710 - IAI47_03580 0.38 -1.0
747,710 - IAI47_03580 0.38 +0.7
747,710 - IAI47_03580 0.38 +0.7
747,710 - IAI47_03580 0.38 +0.1
747,758 + IAI47_03580 0.42 +1.5
747,758 + IAI47_03580 0.42 +0.1
747,759 - IAI47_03580 0.42 +0.8
747,759 - IAI47_03580 0.42 -0.9
747,835 + IAI47_03580 0.49 -0.3
747,835 + IAI47_03580 0.49 -0.4
747,876 + IAI47_03580 0.53 -0.7
747,876 + IAI47_03580 0.53 +1.2
747,876 + IAI47_03580 0.53 -0.1
747,876 + IAI47_03580 0.53 -0.4
747,876 + IAI47_03580 0.53 -1.8
747,877 - IAI47_03580 0.53 -0.9
747,877 - IAI47_03580 0.53 +0.5
747,877 - -1.5
747,877 - IAI47_03580 0.53 +0.6
747,877 - IAI47_03580 0.53 -2.3
747,936 - IAI47_03580 0.58 -0.1
747,936 - IAI47_03580 0.58 -2.1
748,055 + IAI47_03580 0.68 -0.7
748,055 + IAI47_03580 0.68 -0.0
748,056 - IAI47_03580 0.68 +0.6
748,056 - IAI47_03580 0.68 +1.3
748,061 + IAI47_03580 0.69 -0.0
748,061 + IAI47_03580 0.69 +1.6
748,064 + IAI47_03580 0.69 -0.8
748,064 + IAI47_03580 0.69 -0.0
748,065 - IAI47_03580 0.69 +1.8
748,078 + IAI47_03580 0.70 -1.2
748,296 + IAI47_03580 0.89 -2.6
748,296 + IAI47_03580 0.89 +1.3
748,296 + IAI47_03580 0.89 +0.4
748,296 + IAI47_03580 0.89 -0.0
748,296 + IAI47_03580 0.89 +1.6
748,296 + IAI47_03580 0.89 -0.1
748,296 + IAI47_03580 0.89 -2.1
748,296 + IAI47_03580 0.89 +2.2
748,296 + IAI47_03580 0.89 -1.0
748,296 + IAI47_03580 0.89 -0.1
748,296 + IAI47_03580 0.89 -0.7
748,296 + IAI47_03580 0.89 +0.4
748,297 - IAI47_03580 0.90 +0.3
748,297 - IAI47_03580 0.90 -0.1
748,297 - IAI47_03580 0.90 +1.3
748,297 - IAI47_03580 0.90 +0.4
748,297 - IAI47_03580 0.90 -0.9
748,300 + IAI47_03580 0.90 -0.3
748,300 + IAI47_03580 0.90 -0.0
748,300 + IAI47_03580 0.90 -0.4
748,301 - IAI47_03580 0.90 -0.0
748,301 - IAI47_03580 0.90 -1.4
748,301 - IAI47_03580 0.90 -0.0
748,301 - IAI47_03580 0.90 +0.2
748,301 - IAI47_03580 0.90 -1.4
748,327 - -0.7
748,327 - +0.8
748,340 + -0.7
748,351 + -2.5
748,365 + -1.7
748,365 + -0.5
748,365 + -0.4
748,385 + -1.3
748,386 - +0.8
748,387 + -1.2
748,387 + +2.0
748,387 + +2.8
748,387 + -0.8
748,387 + +0.1
748,387 + +0.2
748,387 + -1.5
748,388 - -1.3
748,388 - +0.1
748,388 - +0.4
748,388 - +1.2
748,388 - -1.1
748,388 - -0.9
748,388 - -0.9
748,388 - +0.6
748,388 - -0.4
748,388 - -1.2
748,388 - -1.2
748,388 - -1.8
748,388 - +0.7
748,395 + -0.2
748,395 + -0.6
748,395 + +0.3
748,396 - -1.3
748,409 + +1.4
748,410 - -0.6
748,410 - +1.2
748,410 - -0.9
748,416 + +0.6
748,416 + -1.5
748,416 + -0.1
748,416 + -0.1
748,416 + +0.8
748,416 + +0.8
748,417 - -0.9
748,417 - +0.4
748,417 - -0.3
748,417 - -1.4
748,417 - -1.4
748,417 - -0.7
748,449 + -1.9
748,504 - IAI47_03585 0.16 -2.2
748,504 - IAI47_03585 0.16 -1.9
748,536 - IAI47_03585 0.22 +1.1
748,536 - IAI47_03585 0.22 -1.3
748,631 + IAI47_03585 0.38 -0.0
748,631 + IAI47_03585 0.38 -1.0
748,631 + IAI47_03585 0.38 +0.6
748,632 - IAI47_03585 0.38 -1.1
748,632 - IAI47_03585 0.38 -1.7
748,632 - IAI47_03585 0.38 -1.2
748,740 - IAI47_03585 0.56 -0.4
748,751 + IAI47_03585 0.58 +1.0
748,752 - IAI47_03585 0.58 -1.7
748,752 - IAI47_03585 0.58 -0.5
748,752 - IAI47_03585 0.58 -1.3
748,752 - IAI47_03585 0.58 -0.3
748,752 - IAI47_03585 0.58 -0.4
748,752 - IAI47_03585 0.58 -0.7
748,864 - IAI47_03585 0.77 +0.6
748,921 - IAI47_03585 0.86 +0.6
748,942 + +0.3
748,942 + -0.6
748,943 - +0.4
749,002 - +0.1
749,002 - -1.8
749,024 + +0.6
749,025 - -2.6
749,025 - -1.1
749,033 + +0.2
749,033 + -0.7
749,033 + +0.3
749,078 + +0.7
749,078 + +0.8
749,078 + +0.4
749,078 + -0.8
749,079 - IAI47_03590 0.10 -0.6
749,079 - IAI47_03590 0.10 +0.1
749,079 - IAI47_03590 0.10 +0.4
749,079 - IAI47_03590 0.10 -1.0
749,079 - IAI47_03590 0.10 +1.6
749,079 - IAI47_03590 0.10 -0.4
749,079 - IAI47_03590 0.10 -2.3
749,079 - IAI47_03590 0.10 +0.1
749,137 - IAI47_03590 0.21 +0.6
749,183 + IAI47_03590 0.29 +0.8
749,183 + IAI47_03590 0.29 -0.2
749,183 + IAI47_03590 0.29 +0.3
749,209 - IAI47_03590 0.34 +0.3
749,230 + IAI47_03590 0.37 +2.5
749,230 + IAI47_03590 0.37 +0.1
749,230 + IAI47_03590 0.37 +2.6
749,230 + IAI47_03590 0.37 -0.4
749,230 + IAI47_03590 0.37 -1.3
749,231 - IAI47_03590 0.37 +0.5
749,231 - IAI47_03590 0.37 +0.5
749,255 + IAI47_03590 0.42 +0.2
749,256 - IAI47_03590 0.42 +0.5
749,256 - IAI47_03590 0.42 -1.4
749,268 + IAI47_03590 0.44 +0.3
749,298 + IAI47_03590 0.50 -1.0
749,299 - IAI47_03590 0.50 +1.0
749,332 + IAI47_03590 0.56 -2.6
749,332 + IAI47_03590 0.56 +0.2
749,332 + IAI47_03590 0.56 -0.2
749,333 - IAI47_03590 0.56 +0.1
749,338 + IAI47_03590 0.57 +1.3
749,339 - IAI47_03590 0.57 +0.9
749,339 - IAI47_03590 0.57 +0.1
749,391 + IAI47_03590 0.66 +1.4
749,391 + IAI47_03590 0.66 -0.6
749,391 + +0.8
749,392 - IAI47_03590 0.66 -0.0
749,416 + IAI47_03590 0.71 +0.2
749,417 - IAI47_03590 0.71 -0.8
749,417 - IAI47_03590 0.71 +0.6
749,480 + IAI47_03590 0.82 +2.2
749,515 + IAI47_03590 0.89 -2.1
749,515 + IAI47_03590 0.89 -0.0
749,516 - IAI47_03590 0.89 -0.8
749,516 - IAI47_03590 0.89 +0.2
749,534 + -0.0
749,534 + -0.6
749,554 + -0.0
749,572 + -0.4
749,572 + +0.5
749,589 - -0.8
749,589 - +1.3
749,589 - +1.4
749,591 + -0.5
749,591 + +0.1
749,591 + +0.3
749,592 - +1.8
749,592 - -1.5
749,592 - -0.4
749,592 - -0.4
749,592 - +1.1
749,592 - -0.4
749,612 + -1.3
749,613 - -1.4
749,643 + -0.0
749,644 - -2.2
749,656 - -1.3
749,709 + IAI47_03595 0.17 -2.1
749,710 - IAI47_03595 0.17 -0.7
749,710 - IAI47_03595 0.17 -0.2
749,723 + IAI47_03595 0.19 -0.1
749,723 + IAI47_03595 0.19 -0.1
749,724 - IAI47_03595 0.19 -1.7
749,724 - IAI47_03595 0.19 -0.1
749,724 - IAI47_03595 0.19 -0.0
749,724 - IAI47_03595 0.19 -2.1
749,786 + IAI47_03595 0.28 +0.2
749,913 + IAI47_03595 0.46 -0.6
749,913 + IAI47_03595 0.46 +2.3
749,913 + IAI47_03595 0.46 -1.9
749,913 + IAI47_03595 0.46 +0.5
749,913 + IAI47_03595 0.46 +0.2
749,913 + IAI47_03595 0.46 -1.5
749,914 - IAI47_03595 0.46 +0.5
749,914 - IAI47_03595 0.46 -2.8
749,914 - IAI47_03595 0.46 +0.4
749,918 - IAI47_03595 0.46 -0.7
749,918 - IAI47_03595 0.46 +0.0
749,927 - IAI47_03595 0.48 -1.0
749,927 - IAI47_03595 0.48 -0.5
749,982 + IAI47_03595 0.55 -0.6
749,983 - IAI47_03595 0.56 -0.0

Or see this region's nucleotide sequence