Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03115 and IAI47_03120 are separated by 235 nucleotides IAI47_03120 and IAI47_03125 are separated by 52 nucleotides
IAI47_03115: IAI47_03115 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 645,708 to 646,364
_03115
IAI47_03120: IAI47_03120 - 4,5-DOPA dioxygenase extradiol, at 646,600 to 647,385
_03120
IAI47_03125: IAI47_03125 - glutathionylspermidine synthase family protein, at 647,438 to 648,598
_03125
Position (kb) 646
647
648 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 645.658 kb on + strand at 645.658 kb on + strand at 645.658 kb on + strand at 645.658 kb on + strand at 646.362 kb on + strand at 646.362 kb on + strand at 646.362 kb on + strand at 646.380 kb on + strand at 646.381 kb on - strand at 646.435 kb on + strand at 646.435 kb on + strand at 646.436 kb on - strand at 646.436 kb on - strand at 646.466 kb on + strand at 646.466 kb on + strand at 646.467 kb on - strand at 646.467 kb on - strand at 646.467 kb on - strand at 646.467 kb on - strand at 646.470 kb on + strand at 646.470 kb on + strand at 646.470 kb on + strand at 646.470 kb on + strand at 646.486 kb on + strand at 646.486 kb on + strand at 646.487 kb on - strand at 646.530 kb on + strand at 646.530 kb on + strand at 646.531 kb on - strand at 646.531 kb on - strand at 646.531 kb on - strand at 646.541 kb on + strand at 646.560 kb on - strand at 646.564 kb on + strand at 646.564 kb on + strand at 646.610 kb on + strand at 646.610 kb on + strand at 646.610 kb on + strand at 646.610 kb on + strand at 646.611 kb on - strand at 646.611 kb on - strand at 646.611 kb on - strand at 646.614 kb on + strand at 646.614 kb on + strand at 646.614 kb on + strand at 646.614 kb on + strand at 646.614 kb on + strand at 646.614 kb on + strand at 646.615 kb on - strand at 646.615 kb on - strand at 646.615 kb on - strand at 646.615 kb on - strand at 646.615 kb on - strand at 646.615 kb on - strand at 646.672 kb on + strand at 646.672 kb on + strand at 646.672 kb on + strand at 646.672 kb on + strand at 646.672 kb on + strand at 646.673 kb on - strand at 646.675 kb on - strand at 646.725 kb on + strand, within IAI47_03120 at 646.747 kb on + strand, within IAI47_03120 at 646.747 kb on + strand, within IAI47_03120 at 646.747 kb on + strand, within IAI47_03120 at 646.747 kb on + strand, within IAI47_03120 at 646.748 kb on - strand, within IAI47_03120 at 646.748 kb on - strand, within IAI47_03120 at 646.748 kb on - strand, within IAI47_03120 at 646.748 kb on - strand, within IAI47_03120 at 646.748 kb on - strand, within IAI47_03120 at 646.749 kb on + strand, within IAI47_03120 at 646.749 kb on + strand, within IAI47_03120 at 646.749 kb on + strand, within IAI47_03120 at 646.749 kb on + strand, within IAI47_03120 at 646.749 kb on + strand, within IAI47_03120 at 646.750 kb on - strand, within IAI47_03120 at 646.750 kb on - strand, within IAI47_03120 at 646.785 kb on + strand, within IAI47_03120 at 646.786 kb on - strand, within IAI47_03120 at 646.786 kb on - strand, within IAI47_03120 at 646.838 kb on - strand, within IAI47_03120 at 646.886 kb on + strand, within IAI47_03120 at 646.886 kb on + strand, within IAI47_03120 at 646.886 kb on + strand, within IAI47_03120 at 646.887 kb on - strand, within IAI47_03120 at 646.887 kb on - strand, within IAI47_03120 at 646.901 kb on + strand, within IAI47_03120 at 646.901 kb on + strand, within IAI47_03120 at 646.901 kb on + strand, within IAI47_03120 at 646.901 kb on + strand, within IAI47_03120 at 646.902 kb on - strand, within IAI47_03120 at 646.902 kb on - strand, within IAI47_03120 at 646.902 kb on - strand, within IAI47_03120 at 646.960 kb on + strand, within IAI47_03120 at 646.960 kb on + strand, within IAI47_03120 at 646.960 kb on + strand, within IAI47_03120 at 646.961 kb on - strand, within IAI47_03120 at 646.961 kb on - strand, within IAI47_03120 at 646.961 kb on - strand, within IAI47_03120 at 646.991 kb on + strand, within IAI47_03120 at 646.991 kb on + strand, within IAI47_03120 at 646.991 kb on + strand, within IAI47_03120 at 646.991 kb on + strand, within IAI47_03120 at 646.992 kb on - strand, within IAI47_03120 at 646.992 kb on - strand, within IAI47_03120 at 646.992 kb on - strand, within IAI47_03120 at 646.992 kb on - strand, within IAI47_03120 at 646.992 kb on - strand, within IAI47_03120 at 647.007 kb on + strand, within IAI47_03120 at 647.100 kb on + strand, within IAI47_03120 at 647.100 kb on + strand, within IAI47_03120 at 647.101 kb on - strand, within IAI47_03120 at 647.101 kb on - strand, within IAI47_03120 at 647.101 kb on - strand, within IAI47_03120 at 647.101 kb on - strand, within IAI47_03120 at 647.101 kb on - strand, within IAI47_03120 at 647.109 kb on + strand, within IAI47_03120 at 647.140 kb on + strand, within IAI47_03120 at 647.140 kb on + strand, within IAI47_03120 at 647.141 kb on - strand, within IAI47_03120 at 647.226 kb on + strand, within IAI47_03120 at 647.226 kb on + strand, within IAI47_03120 at 647.226 kb on + strand, within IAI47_03120 at 647.227 kb on - strand, within IAI47_03120 at 647.253 kb on + strand, within IAI47_03120 at 647.253 kb on + strand, within IAI47_03120 at 647.272 kb on + strand, within IAI47_03120 at 647.273 kb on - strand, within IAI47_03120 at 647.273 kb on - strand, within IAI47_03120 at 647.273 kb on - strand, within IAI47_03120 at 647.273 kb on - strand, within IAI47_03120 at 647.273 kb on - strand, within IAI47_03120 at 647.287 kb on + strand, within IAI47_03120 at 647.287 kb on + strand, within IAI47_03120 at 647.287 kb on + strand, within IAI47_03120 at 647.287 kb on + strand, within IAI47_03120 at 647.288 kb on - strand, within IAI47_03120 at 647.288 kb on - strand, within IAI47_03120 at 647.288 kb on - strand, within IAI47_03120 at 647.288 kb on - strand, within IAI47_03120 at 647.288 kb on - strand, within IAI47_03120 at 647.288 kb on - strand, within IAI47_03120 at 647.288 kb on - strand, within IAI47_03120 at 647.378 kb on + strand at 647.378 kb on + strand at 647.378 kb on + strand at 647.378 kb on + strand at 647.379 kb on - strand at 647.379 kb on - strand at 647.379 kb on - strand at 647.379 kb on - strand at 647.394 kb on + strand at 647.394 kb on + strand at 647.394 kb on + strand at 647.394 kb on + strand at 647.402 kb on + strand at 647.402 kb on + strand at 647.403 kb on - strand at 647.403 kb on - strand at 647.403 kb on - strand at 647.423 kb on + strand at 647.423 kb on + strand at 647.423 kb on + strand at 647.423 kb on + strand at 647.423 kb on + strand at 647.423 kb on + strand at 647.424 kb on - strand at 647.424 kb on - strand at 647.446 kb on + strand at 647.446 kb on + strand at 647.554 kb on + strand, within IAI47_03125 at 647.554 kb on + strand, within IAI47_03125 at 647.554 kb on + strand, within IAI47_03125 at 647.554 kb on + strand, within IAI47_03125 at 647.554 kb on + strand, within IAI47_03125 at 647.554 kb on + strand, within IAI47_03125 at 647.555 kb on - strand, within IAI47_03125 at 647.555 kb on - strand, within IAI47_03125 at 647.555 kb on - strand, within IAI47_03125 at 647.555 kb on - strand, within IAI47_03125 at 647.555 kb on - strand, within IAI47_03125 at 647.555 kb on - strand, within IAI47_03125 at 647.555 kb on - strand, within IAI47_03125 at 647.555 kb on - strand, within IAI47_03125 at 647.555 kb on - strand, within IAI47_03125 at 647.555 kb on - strand, within IAI47_03125 at 647.555 kb on - strand, within IAI47_03125 at 647.556 kb on + strand, within IAI47_03125 at 647.556 kb on + strand, within IAI47_03125 at 647.556 kb on + strand, within IAI47_03125 at 647.556 kb on + strand, within IAI47_03125 at 647.556 kb on + strand, within IAI47_03125 at 647.556 kb on + strand, within IAI47_03125 at 647.556 kb on + strand, within IAI47_03125 at 647.556 kb on + strand, within IAI47_03125 at 647.556 kb on + strand, within IAI47_03125 at 647.556 kb on + strand, within IAI47_03125 at 647.557 kb on - strand, within IAI47_03125 at 647.557 kb on - strand, within IAI47_03125 at 647.557 kb on - strand, within IAI47_03125 at 647.557 kb on - strand, within IAI47_03125 at 647.557 kb on - strand, within IAI47_03125 at 647.557 kb on - strand, within IAI47_03125 at 647.557 kb on - strand at 647.557 kb on - strand, within IAI47_03125 at 647.616 kb on + strand, within IAI47_03125 at 647.617 kb on - strand, within IAI47_03125 at 647.655 kb on - strand, within IAI47_03125 at 647.655 kb on - strand, within IAI47_03125 at 647.687 kb on + strand, within IAI47_03125 at 647.703 kb on + strand, within IAI47_03125 at 647.703 kb on + strand, within IAI47_03125 at 647.703 kb on + strand, within IAI47_03125 at 647.703 kb on + strand, within IAI47_03125 at 647.703 kb on + strand, within IAI47_03125 at 647.703 kb on + strand, within IAI47_03125 at 647.703 kb on + strand, within IAI47_03125 at 647.703 kb on + strand, within IAI47_03125 at 647.703 kb on + strand, within IAI47_03125 at 647.703 kb on + strand, within IAI47_03125 at 647.703 kb on + strand, within IAI47_03125 at 647.703 kb on + strand, within IAI47_03125 at 647.703 kb on + strand, within IAI47_03125 at 647.704 kb on - strand, within IAI47_03125 at 647.704 kb on - strand, within IAI47_03125 at 647.704 kb on - strand, within IAI47_03125 at 647.704 kb on - strand, within IAI47_03125 at 647.704 kb on - strand, within IAI47_03125 at 647.704 kb on - strand, within IAI47_03125 at 647.704 kb on - strand, within IAI47_03125 at 647.704 kb on - strand, within IAI47_03125 at 647.704 kb on - strand, within IAI47_03125 at 647.840 kb on + strand, within IAI47_03125 at 647.840 kb on + strand, within IAI47_03125 at 647.840 kb on + strand, within IAI47_03125 at 647.841 kb on - strand, within IAI47_03125 at 647.841 kb on - strand, within IAI47_03125 at 647.841 kb on - strand, within IAI47_03125 at 647.841 kb on - strand, within IAI47_03125 at 647.841 kb on - strand, within IAI47_03125 at 647.884 kb on + strand, within IAI47_03125 at 647.884 kb on + strand, within IAI47_03125 at 647.884 kb on + strand, within IAI47_03125 at 647.884 kb on + strand, within IAI47_03125 at 647.885 kb on - strand, within IAI47_03125 at 647.885 kb on - strand, within IAI47_03125 at 647.885 kb on - strand, within IAI47_03125 at 647.885 kb on - strand, within IAI47_03125 at 647.898 kb on + strand, within IAI47_03125 at 647.898 kb on + strand, within IAI47_03125 at 647.899 kb on - strand, within IAI47_03125 at 647.899 kb on - strand, within IAI47_03125 at 647.914 kb on + strand, within IAI47_03125 at 647.914 kb on + strand, within IAI47_03125 at 647.915 kb on - strand, within IAI47_03125 at 647.975 kb on + strand, within IAI47_03125 at 647.975 kb on + strand, within IAI47_03125 at 647.975 kb on + strand, within IAI47_03125 at 647.975 kb on + strand, within IAI47_03125 at 647.975 kb on + strand, within IAI47_03125 at 647.975 kb on + strand, within IAI47_03125 at 647.975 kb on + strand, within IAI47_03125 at 647.975 kb on + strand, within IAI47_03125 at 647.975 kb on + strand, within IAI47_03125 at 647.975 kb on + strand, within IAI47_03125 at 647.975 kb on + strand, within IAI47_03125 at 647.975 kb on + strand, within IAI47_03125 at 647.975 kb on + strand, within IAI47_03125 at 647.975 kb on + strand, within IAI47_03125 at 647.975 kb on + strand, within IAI47_03125 at 647.976 kb on - strand, within IAI47_03125 at 647.976 kb on - strand, within IAI47_03125 at 647.976 kb on - strand, within IAI47_03125 at 647.976 kb on - strand, within IAI47_03125 at 647.976 kb on - strand, within IAI47_03125 at 647.976 kb on - strand, within IAI47_03125 at 647.976 kb on - strand, within IAI47_03125 at 647.976 kb on - strand, within IAI47_03125 at 647.976 kb on - strand, within IAI47_03125 at 647.976 kb on - strand, within IAI47_03125 at 647.976 kb on - strand, within IAI47_03125 at 647.976 kb on - strand, within IAI47_03125 at 647.976 kb on - strand, within IAI47_03125 at 647.976 kb on - strand, within IAI47_03125 at 647.976 kb on - strand, within IAI47_03125 at 647.977 kb on + strand, within IAI47_03125 at 647.977 kb on + strand, within IAI47_03125 at 647.979 kb on + strand, within IAI47_03125 at 648.011 kb on - strand, within IAI47_03125 at 648.027 kb on + strand, within IAI47_03125 at 648.027 kb on + strand, within IAI47_03125 at 648.027 kb on + strand, within IAI47_03125 at 648.027 kb on + strand, within IAI47_03125 at 648.027 kb on + strand, within IAI47_03125 at 648.028 kb on - strand, within IAI47_03125 at 648.028 kb on - strand, within IAI47_03125 at 648.028 kb on - strand, within IAI47_03125 at 648.028 kb on - strand, within IAI47_03125 at 648.028 kb on - strand, within IAI47_03125 at 648.085 kb on + strand, within IAI47_03125 at 648.104 kb on + strand, within IAI47_03125 at 648.104 kb on + strand, within IAI47_03125 at 648.104 kb on + strand, within IAI47_03125 at 648.104 kb on + strand, within IAI47_03125 at 648.105 kb on - strand, within IAI47_03125 at 648.105 kb on - strand, within IAI47_03125 at 648.105 kb on - strand, within IAI47_03125 at 648.105 kb on - strand, within IAI47_03125 at 648.142 kb on + strand, within IAI47_03125 at 648.142 kb on + strand, within IAI47_03125 at 648.143 kb on - strand, within IAI47_03125 at 648.145 kb on + strand, within IAI47_03125 at 648.146 kb on - strand, within IAI47_03125 at 648.146 kb on - strand, within IAI47_03125 at 648.225 kb on + strand, within IAI47_03125 at 648.225 kb on + strand, within IAI47_03125 at 648.226 kb on - strand, within IAI47_03125 at 648.241 kb on + strand, within IAI47_03125 at 648.306 kb on + strand, within IAI47_03125 at 648.307 kb on - strand, within IAI47_03125
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 645,658 + -0.7 645,658 + -0.2 645,658 + +0.2 645,658 + +0.8 646,362 + +0.1 646,362 + -2.0 646,362 + +1.6 646,380 + +1.8 646,381 - -1.0 646,435 + +0.4 646,435 + +1.5 646,436 - +0.2 646,436 - -1.6 646,466 + -0.5 646,466 + +0.8 646,467 - +0.4 646,467 - -0.9 646,467 - +0.7 646,467 - -0.1 646,470 + -1.6 646,470 + +0.3 646,470 + +0.4 646,470 + -1.8 646,486 + +1.1 646,486 + -0.6 646,487 - -0.8 646,530 + +0.2 646,530 + -0.6 646,531 - +0.1 646,531 - +0.5 646,531 - +0.7 646,541 + +0.5 646,560 - -1.8 646,564 + +1.6 646,564 + +0.3 646,610 + -0.8 646,610 + +0.6 646,610 + +0.9 646,610 + -1.3 646,611 - -0.8 646,611 - -0.7 646,611 - -0.6 646,614 + -0.3 646,614 + +0.9 646,614 + +0.7 646,614 + +0.6 646,614 + -0.6 646,614 + +0.2 646,615 - +0.8 646,615 - -0.8 646,615 - +2.6 646,615 - +0.8 646,615 - -1.4 646,615 - -1.1 646,672 + -0.1 646,672 + -1.5 646,672 + -1.6 646,672 + +1.2 646,672 + +0.7 646,673 - -2.2 646,675 - -1.3 646,725 + IAI47_03120 0.16 -0.1 646,747 + IAI47_03120 0.19 -3.2 646,747 + IAI47_03120 0.19 +0.9 646,747 + IAI47_03120 0.19 -0.4 646,747 + IAI47_03120 0.19 +0.6 646,748 - IAI47_03120 0.19 +0.1 646,748 - IAI47_03120 0.19 +1.7 646,748 - IAI47_03120 0.19 -1.1 646,748 - IAI47_03120 0.19 -1.2 646,748 - IAI47_03120 0.19 +2.9 646,749 + IAI47_03120 0.19 -0.6 646,749 + IAI47_03120 0.19 -0.0 646,749 + IAI47_03120 0.19 -0.6 646,749 + IAI47_03120 0.19 -0.4 646,749 + IAI47_03120 0.19 -0.2 646,750 - IAI47_03120 0.19 +1.8 646,750 - IAI47_03120 0.19 +1.2 646,785 + IAI47_03120 0.24 -1.0 646,786 - IAI47_03120 0.24 +0.3 646,786 - IAI47_03120 0.24 +0.4 646,838 - IAI47_03120 0.30 +1.3 646,886 + IAI47_03120 0.36 -1.8 646,886 + IAI47_03120 0.36 -0.3 646,886 + IAI47_03120 0.36 +1.5 646,887 - IAI47_03120 0.37 -1.4 646,887 - IAI47_03120 0.37 -0.4 646,901 + IAI47_03120 0.38 +0.6 646,901 + IAI47_03120 0.38 -1.8 646,901 + IAI47_03120 0.38 -0.4 646,901 + IAI47_03120 0.38 -1.2 646,902 - IAI47_03120 0.38 -1.2 646,902 - IAI47_03120 0.38 +0.6 646,902 - IAI47_03120 0.38 +0.5 646,960 + IAI47_03120 0.46 -0.3 646,960 + IAI47_03120 0.46 -0.8 646,960 + IAI47_03120 0.46 +0.5 646,961 - IAI47_03120 0.46 +0.6 646,961 - IAI47_03120 0.46 -0.3 646,961 - IAI47_03120 0.46 +0.2 646,991 + IAI47_03120 0.50 -0.6 646,991 + IAI47_03120 0.50 -0.5 646,991 + IAI47_03120 0.50 +0.6 646,991 + IAI47_03120 0.50 -2.3 646,992 - IAI47_03120 0.50 -1.1 646,992 - IAI47_03120 0.50 -0.6 646,992 - IAI47_03120 0.50 +1.1 646,992 - IAI47_03120 0.50 -0.0 646,992 - IAI47_03120 0.50 -0.0 647,007 + IAI47_03120 0.52 -1.9 647,100 + IAI47_03120 0.64 -1.7 647,100 + IAI47_03120 0.64 +0.6 647,101 - IAI47_03120 0.64 -0.2 647,101 - IAI47_03120 0.64 +0.1 647,101 - IAI47_03120 0.64 -2.8 647,101 - IAI47_03120 0.64 -1.4 647,101 - IAI47_03120 0.64 +0.2 647,109 + IAI47_03120 0.65 +0.3 647,140 + IAI47_03120 0.69 +2.6 647,140 + IAI47_03120 0.69 -1.0 647,141 - IAI47_03120 0.69 -0.3 647,226 + IAI47_03120 0.80 -1.4 647,226 + IAI47_03120 0.80 -1.4 647,226 + IAI47_03120 0.80 +0.1 647,227 - IAI47_03120 0.80 -0.3 647,253 + IAI47_03120 0.83 +0.7 647,253 + IAI47_03120 0.83 +0.3 647,272 + IAI47_03120 0.85 -0.2 647,273 - IAI47_03120 0.86 +0.6 647,273 - IAI47_03120 0.86 +1.3 647,273 - IAI47_03120 0.86 +0.3 647,273 - IAI47_03120 0.86 +0.5 647,273 - IAI47_03120 0.86 +1.2 647,287 + IAI47_03120 0.87 -0.3 647,287 + IAI47_03120 0.87 +0.1 647,287 + IAI47_03120 0.87 -0.3 647,287 + IAI47_03120 0.87 +0.3 647,288 - IAI47_03120 0.88 +0.6 647,288 - IAI47_03120 0.88 +1.7 647,288 - IAI47_03120 0.88 +1.3 647,288 - IAI47_03120 0.88 +0.8 647,288 - IAI47_03120 0.88 +0.4 647,288 - IAI47_03120 0.88 -1.9 647,288 - IAI47_03120 0.88 -0.2 647,378 + -0.4 647,378 + +0.2 647,378 + +1.1 647,378 + -1.1 647,379 - +1.5 647,379 - -1.4 647,379 - -1.5 647,379 - -1.5 647,394 + +0.3 647,394 + -0.7 647,394 + +1.4 647,394 + -0.7 647,402 + -0.1 647,402 + -2.0 647,403 - -1.1 647,403 - -0.0 647,403 - -0.4 647,423 + -0.1 647,423 + +0.1 647,423 + -0.3 647,423 + +0.4 647,423 + +1.1 647,423 + +0.3 647,424 - -0.4 647,424 - -1.4 647,446 + -1.1 647,446 + +0.8 647,554 + IAI47_03125 0.10 +0.5 647,554 + IAI47_03125 0.10 +0.3 647,554 + IAI47_03125 0.10 +1.0 647,554 + IAI47_03125 0.10 +0.5 647,554 + IAI47_03125 0.10 +1.0 647,554 + IAI47_03125 0.10 -0.5 647,555 - IAI47_03125 0.10 -1.6 647,555 - IAI47_03125 0.10 +1.7 647,555 - IAI47_03125 0.10 -0.5 647,555 - IAI47_03125 0.10 -0.1 647,555 - IAI47_03125 0.10 -0.5 647,555 - IAI47_03125 0.10 +0.1 647,555 - IAI47_03125 0.10 -0.1 647,555 - IAI47_03125 0.10 +0.6 647,555 - IAI47_03125 0.10 +0.5 647,555 - IAI47_03125 0.10 -0.6 647,555 - IAI47_03125 0.10 +0.6 647,556 + IAI47_03125 0.10 -0.1 647,556 + IAI47_03125 0.10 +0.9 647,556 + IAI47_03125 0.10 +0.0 647,556 + IAI47_03125 0.10 -0.6 647,556 + IAI47_03125 0.10 +0.2 647,556 + IAI47_03125 0.10 +0.5 647,556 + IAI47_03125 0.10 +2.8 647,556 + IAI47_03125 0.10 -1.0 647,556 + IAI47_03125 0.10 -0.5 647,556 + IAI47_03125 0.10 +0.3 647,557 - IAI47_03125 0.10 +0.1 647,557 - IAI47_03125 0.10 -2.9 647,557 - IAI47_03125 0.10 +1.2 647,557 - 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Or see this region's nucleotide sequence