Strain Fitness in Pantoea sp. MT58 around IAI47_18595

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,960,159	+		IAI47_18590	0.67	+2.0
3,960,159	+		IAI47_18590	0.67	+2.1
3,960,159	+		IAI47_18590	0.67	+0.9
3,960,159	+		IAI47_18590	0.67	+1.2
3,960,159	+		IAI47_18590	0.67	+1.9
3,960,160	-		IAI47_18590	0.67	-1.3
3,960,160	-		IAI47_18590	0.67	+1.1
3,960,160	-		IAI47_18590	0.67	+2.3
3,960,160	-		IAI47_18590	0.67	+0.2
3,960,163	+		IAI47_18590	0.67	-1.4
3,960,163	+		IAI47_18590	0.67	+0.9
3,960,163	+		IAI47_18590	0.67	+0.2
3,960,164	-		IAI47_18590	0.67	+1.6
3,960,164	-		IAI47_18590	0.67	+2.1
3,960,164	-		IAI47_18590	0.67	+0.6
3,960,164	-		IAI47_18590	0.67	+2.4
3,960,175	+		IAI47_18590	0.67	+2.0
3,960,296	-		IAI47_18590	0.73	+2.8
3,960,342	+		IAI47_18590	0.76	+0.5
3,960,342	+		IAI47_18590	0.76	+1.6
3,960,342	+		IAI47_18590	0.76	+2.2
3,960,342	+		IAI47_18590	0.76	+0.7
3,960,342	+		IAI47_18590	0.76	+1.3
3,960,343	-		IAI47_18590	0.76	+1.9
3,960,343	-		IAI47_18590	0.76	+0.0
3,960,343	-		IAI47_18590	0.76	+1.1
3,960,343	-		IAI47_18590	0.76	+0.3
3,960,343	-		IAI47_18590	0.76	-0.6
3,960,349	+		IAI47_18590	0.76	+2.2
3,960,349	+		IAI47_18590	0.76	+0.2
3,960,349	+		IAI47_18590	0.76	+1.7
3,960,350	-		IAI47_18590	0.76	+0.2
3,960,376	+		IAI47_18590	0.77	+1.7
3,960,376	+		IAI47_18590	0.77	+1.8
3,960,400	+		IAI47_18590	0.79	+2.4
3,960,400	+		IAI47_18590	0.79	+3.1
3,960,400	+		IAI47_18590	0.79	-0.4
3,960,418	-		IAI47_18590	0.79	+1.5
3,960,418	-		IAI47_18590	0.79	+2.2
3,960,418	-		IAI47_18590	0.79	+2.2
3,960,418	-		IAI47_18590	0.79	+2.3
3,960,456	+		IAI47_18590	0.81	+3.4
3,960,457	-		IAI47_18590	0.81	+1.4
3,960,457	-		IAI47_18590	0.81	+0.2
3,960,457	-		IAI47_18590	0.81	+2.5
3,960,470	-		IAI47_18590	0.82	+2.5
3,960,584	+		IAI47_18590	0.88	+2.2
3,960,584	+		IAI47_18590	0.88	+4.0
3,960,585	-		IAI47_18590	0.88	-0.0
3,960,616	+		IAI47_18590	0.89	+1.6
3,960,616	+		IAI47_18590	0.89	+1.9
3,960,617	-		IAI47_18590	0.89	+1.9
3,960,617	-		IAI47_18590	0.89	-1.3
3,960,634	+				+1.6
3,960,635	-				+0.2
3,960,635	-				+2.6
3,960,685	+				-0.1
3,960,706	-				+2.2
3,960,751	+				+1.0
3,960,757	+				+1.7
3,960,757	+				-1.4
3,960,757	+				+0.6
3,960,757	+				+0.4
3,960,758	-				+1.0
3,960,758	-				+1.9
3,960,758	-				+2.2
3,960,758	-				-1.7
3,960,758	-				+1.3
3,960,769	+				+1.5
3,960,770	-				+1.4
3,960,804	-				+2.0
3,960,804	-				+2.5
3,960,808	+				+2.5
3,960,808	+				+0.6
3,960,808	+				+1.5
3,960,808	+				+1.9
3,960,808	+				-0.9
3,960,809	-				+2.0
3,960,821	+				+1.0
3,960,821	+				+1.7
3,960,821	+				+0.2
3,960,821	+				-2.4
3,960,862	+				+2.1
3,960,862	+				+2.4
3,960,862	+				+1.4
3,960,863	-				-1.6
3,960,863	-				-1.9
3,960,863	-				-0.7
3,960,863	-				-1.1
3,960,863	-				-2.7
3,960,872	+				+1.0
3,960,872	+				+1.7
3,960,872	+				+1.9
3,960,872	+				+2.9
3,960,872	+				+2.0
3,960,872	+				+1.7
3,960,872	+				-0.8
3,960,873	-				-1.6
3,960,873	-				+2.2
3,960,873	-				-0.3
3,960,873	-				-2.0
3,960,873	-				-2.2
3,960,873	-				+0.6
3,960,873	-				-0.1
3,960,873	-				+1.2
3,960,887	+				+2.6
3,960,887	+				+1.0
3,960,887	+				+2.1
3,960,887	+				+2.7
3,960,887	+				-0.0
3,960,887	+				+0.9
3,960,888	-				-1.8
3,960,888	-				+1.5
3,960,888	-				-0.1
3,960,888	-				-1.6
3,960,888	-				-0.9
3,960,888	-				+2.2
3,960,888	-				-1.4
3,960,888	-				-1.1
3,960,888	-				-1.0
3,960,888	-				+0.8
3,960,888	-				+0.3
3,960,888	-				-1.4
3,960,890	-				-0.7
3,960,890	-				-3.1
3,960,901	+				-1.4
3,960,911	-				-0.3
3,960,947	+				+1.3
3,960,948	-				-1.5
3,960,951	+				+0.5
3,960,952	-				-0.6
3,960,952	-				-1.8
3,961,105	-				+2.7
3,961,105	-				+2.2
3,961,126	+				+3.2
3,961,194	+		IAI47_18595	0.14	+3.0
3,961,194	+		IAI47_18595	0.14	-0.2
3,961,195	-		IAI47_18595	0.14	+2.1
3,961,243	+		IAI47_18595	0.19	+3.7
3,961,243	+		IAI47_18595	0.19	+3.2
3,961,243	+		IAI47_18595	0.19	+3.5
3,961,243	+		IAI47_18595	0.19	+3.5
3,961,243	+		IAI47_18595	0.19	+2.2
3,961,244	-		IAI47_18595	0.19	+1.4
3,961,244	-		IAI47_18595	0.19	+2.3
3,961,244	-		IAI47_18595	0.19	+2.0
3,961,249	+		IAI47_18595	0.20	+3.0
3,961,249	+		IAI47_18595	0.20	+2.6
3,961,249	+		IAI47_18595	0.20	-1.5
3,961,249	+		IAI47_18595	0.20	+2.5
3,961,250	-		IAI47_18595	0.20	+1.5
3,961,250	-		IAI47_18595	0.20	+2.7
3,961,250	-		IAI47_18595	0.20	+1.9
3,961,250	-		IAI47_18595	0.20	+1.4
3,961,250	-		IAI47_18595	0.20	+2.5
3,961,251	+		IAI47_18595	0.20	+1.4
3,961,251	+		IAI47_18595	0.20	+2.0
3,961,251	+		IAI47_18595	0.20	+2.3
3,961,252	-		IAI47_18595	0.20	+3.0
3,961,252	-		IAI47_18595	0.20	+0.6
3,961,302	+		IAI47_18595	0.25	+1.5
3,961,302	+		IAI47_18595	0.25	+3.9
3,961,303	-		IAI47_18595	0.25	+3.0
3,961,303	-		IAI47_18595	0.25	+1.9
3,961,303	-		IAI47_18595	0.25	+2.8
3,961,303	-		IAI47_18595	0.25	+1.2
3,961,303	-		IAI47_18595	0.25	+3.3
3,961,303	-		IAI47_18595	0.25	+2.5
3,961,303	-		IAI47_18595	0.25	+2.0
3,961,450	+		IAI47_18595	0.40	+1.1
3,961,450	+		IAI47_18595	0.40	+3.0
3,961,451	-		IAI47_18595	0.40	+0.5
3,961,451	-		IAI47_18595	0.40	+2.4
3,961,451	-		IAI47_18595	0.40	+2.9
3,961,462	+		IAI47_18595	0.41	+3.0
3,961,462	+		IAI47_18595	0.41	+2.2
3,961,463	-		IAI47_18595	0.41	+3.2
3,961,471	+		IAI47_18595	0.42	+1.4
3,961,471	+		IAI47_18595	0.42	+2.0
3,961,530	+		IAI47_18595	0.48	+4.1
3,961,530	+		IAI47_18595	0.48	+2.2
3,961,530	+		IAI47_18595	0.48	+1.8
3,961,531	-		IAI47_18595	0.48	+1.8
3,961,531	-		IAI47_18595	0.48	+3.4
3,961,531	-		IAI47_18595	0.48	+3.2
3,961,531	-		IAI47_18595	0.48	+2.6
3,961,540	+		IAI47_18595	0.49	+2.4
3,961,541	-		IAI47_18595	0.49	-1.6
3,961,551	+		IAI47_18595	0.50	+1.8
3,961,551	+		IAI47_18595	0.50	+3.1
3,961,551	+		IAI47_18595	0.50	+2.9
3,961,551	+		IAI47_18595	0.50	+2.0
3,961,551	+		IAI47_18595	0.50	+1.5
3,961,551	+		IAI47_18595	0.50	+2.4
3,961,552	-		IAI47_18595	0.50	+3.2
3,961,552	-		IAI47_18595	0.50	+1.1
3,961,552	-		IAI47_18595	0.50	+3.0
3,961,552	-		IAI47_18595	0.50	+1.3
3,961,552	-		IAI47_18595	0.50	+2.4
3,961,552	-		IAI47_18595	0.50	+0.9
3,961,552	-		IAI47_18595	0.50	+2.6
3,961,552	-		IAI47_18595	0.50	+2.3
3,961,552	-		IAI47_18595	0.50	+2.4
3,961,552	-		IAI47_18595	0.50	+2.5
3,961,552	-		IAI47_18595	0.50	+2.4
3,961,552	-		IAI47_18595	0.50	+3.8
3,961,552	-		IAI47_18595	0.50	+2.2
3,961,552	-		IAI47_18595	0.50	+3.1
3,961,561	+		IAI47_18595	0.51	+2.5
3,961,561	+		IAI47_18595	0.51	+2.8
3,961,593	+		IAI47_18595	0.54	+2.6
3,961,594	+		IAI47_18595	0.54	+2.3
3,961,594	+		IAI47_18595	0.54	+2.8
3,961,594	+		IAI47_18595	0.54	+0.9
3,961,595	-		IAI47_18595	0.54	+2.3
3,961,595	-		IAI47_18595	0.54	+2.8
3,961,596	+		IAI47_18595	0.54	+2.6
3,961,596	+		IAI47_18595	0.54	+0.9
3,961,597	-		IAI47_18595	0.54	+2.1
3,961,597	-		IAI47_18595	0.54	+2.4
3,961,643	-		IAI47_18595	0.59	+2.1
3,961,662	+		IAI47_18595	0.61	+1.6
3,961,662	+		IAI47_18595	0.61	+2.6
3,961,663	-		IAI47_18595	0.61	+3.0
3,961,663	-		IAI47_18595	0.61	+2.2
3,961,663	-		IAI47_18595	0.61	+2.0
3,961,742	-		IAI47_18595	0.69	+2.8
3,961,742	-		IAI47_18595	0.69	+0.2
3,961,773	+		IAI47_18595	0.72	+1.4
3,961,773	+		IAI47_18595	0.72	+0.2
3,961,773	+		IAI47_18595	0.72	+0.4
3,961,773	+		IAI47_18595	0.72	+2.7
3,961,774	-		IAI47_18595	0.72	-1.2
3,961,774	-		IAI47_18595	0.72	+3.6
3,961,782	+		IAI47_18595	0.73	+1.3
3,961,804	+		IAI47_18595	0.75	+2.2
3,961,805	-		IAI47_18595	0.75	+3.1
3,961,805	-		IAI47_18595	0.75	+3.5
3,961,808	+		IAI47_18595	0.75	+3.4
3,961,808	+		IAI47_18595	0.75	+2.6
3,961,809	-		IAI47_18595	0.75	+1.1
3,961,809	-		IAI47_18595	0.75	+2.2
3,961,884	+		IAI47_18595	0.83	+0.2
3,961,885	-		IAI47_18595	0.83	+1.9
3,961,885	-		IAI47_18595	0.83	-1.0
3,961,915	+		IAI47_18595	0.86	+1.9
3,961,915	+		IAI47_18595	0.86	+2.3
3,961,915	+		IAI47_18595	0.86	+4.0
3,961,916	-		IAI47_18595	0.86	+1.9
3,961,916	-		IAI47_18595	0.86	+1.0
3,961,916	-		IAI47_18595	0.86	+2.0
3,961,963	+				+1.8
3,961,964	-				+3.5
3,961,964	-				+2.8
3,962,012	+				+3.6
3,962,012	+				+2.0
3,962,012	+				+2.4
3,962,012	+				+3.0
3,962,013	-				+2.3
3,962,048	-				+2.7
3,962,048	-				+2.3
3,962,048	-				+3.2
3,962,048	-				+3.0
3,962,066	+				+1.8
3,962,066	+				+1.4
3,962,066	+				+2.4
3,962,067	-				-0.3
3,962,067	-				-0.8
3,962,067	-				-3.8
3,962,072	+				-0.5
3,962,146	+		IAI47_18600	0.18	+0.9
3,962,146	+		IAI47_18600	0.18	+0.6
3,962,146	+		IAI47_18600	0.18	-0.6
3,962,185	+		IAI47_18600	0.27	-1.0
3,962,185	+		IAI47_18600	0.27	+2.2
3,962,185	+		IAI47_18600	0.27	+0.1
3,962,185	+		IAI47_18600	0.27	-0.5
3,962,185	+		IAI47_18600	0.27	-1.5
3,962,186	-		IAI47_18600	0.27	-1.7
3,962,186	-		IAI47_18600	0.27	+0.2
3,962,186	-		IAI47_18600	0.27	-0.7
3,962,215	-		IAI47_18600	0.34	-2.1
3,962,240	+		IAI47_18600	0.39	-1.3
3,962,240	+		IAI47_18600	0.39	+0.6
3,962,240	+		IAI47_18600	0.39	-2.1
3,962,240	+		IAI47_18600	0.39	+0.2
3,962,240	+		IAI47_18600	0.39	+1.0
3,962,240	+		IAI47_18600	0.39	-1.1
3,962,240	+		IAI47_18600	0.39	-1.4
3,962,241	-		IAI47_18600	0.40	+0.2
3,962,241	-		IAI47_18600	0.40	-1.0
3,962,241	-		IAI47_18600	0.40	+1.4
3,962,241	-		IAI47_18600	0.40	+1.0
3,962,241	-		IAI47_18600	0.40	+0.3
3,962,241	-		IAI47_18600	0.40	+1.1
3,962,241	-		IAI47_18600	0.40	-1.4
3,962,241	-		IAI47_18600	0.40	-1.2
3,962,241	-		IAI47_18600	0.40	-0.9
3,962,308	+		IAI47_18600	0.55	+0.9
3,962,308	+		IAI47_18600	0.55	-1.4
3,962,308	+		IAI47_18600	0.55	+0.2
3,962,309	-		IAI47_18600	0.55	-0.4
3,962,309	-		IAI47_18600	0.55	-1.9
3,962,309	-		IAI47_18600	0.55	+1.8
3,962,309	-		IAI47_18600	0.55	-1.9
3,962,389	-		IAI47_18600	0.73	+0.3
3,962,389	-		IAI47_18600	0.73	+0.2
3,962,389	-		IAI47_18600	0.73	+0.8
3,962,390	+		IAI47_18600	0.73	-1.4
3,962,391	-		IAI47_18600	0.73	-0.5
3,962,391	-		IAI47_18600	0.73	-1.0
3,962,489	-				-1.1
3,962,489	-				-0.4
3,962,489	-				+0.4
3,962,489	-				+2.3
3,962,509	+				+3.3
3,962,509	+				+0.7
3,962,509	+				-1.4
3,962,509	+				-1.4
3,962,510	-				-2.3
3,962,510	-				-0.8
3,962,510	-				-0.3
3,962,510	-				-2.2
3,962,510	-				-0.0
3,962,510	-				-0.7
3,962,510	-				-3.1
3,962,510	-				-2.5
3,962,510	-				+0.2
3,962,528	-				-1.4
3,962,536	+				-2.1
3,962,537	-				-0.6
3,962,537	-				-0.5
3,962,537	-				-0.5
3,962,537	-				+1.4
3,962,560	+				-2.2
3,962,560	+				-1.0
3,962,560	+				-2.9
3,962,560	+				-0.4
3,962,560	+				-0.6
3,962,561	-				-0.9
3,962,578	+				-0.1
3,962,579	-				-1.5
3,962,620	+				-0.2
3,962,620	+				-2.5
3,962,621	-				-0.8
3,962,621	-				-2.0
3,962,644	+				-0.6
3,962,644	+				+1.0
3,962,645	-				-1.8
3,962,645	-				-2.1
3,962,645	-				-2.5
3,962,645	-				+0.2
3,962,674	+				-2.6
3,962,674	+				-3.6
3,962,674	+				-2.2
3,962,674	+				-1.5
3,962,674	+				-0.7
3,962,674	+				-1.3
3,962,674	+				+1.7
3,962,675	-				-0.4
3,962,675	-				+1.7
3,962,675	-				-2.5
3,962,675	-				+0.2
3,962,677	+				-0.0
3,962,677	+				-3.2
3,962,677	+				-0.0
3,962,677	+				-1.9
3,962,677	+				+3.6
3,962,677	+				-2.0
3,962,677	+				-2.5
3,962,677	+				-0.6
3,962,678	-				+0.0
3,962,678	-				-0.8
3,962,678	-				+0.9
3,962,678	-				-0.5
3,962,678	-				+1.0
3,962,678	-				-1.6
3,962,678	-				+1.7
3,962,688	+				-0.4
3,962,688	+				-2.2
3,962,688	+				+0.9
3,962,689	-				-0.5
3,962,689	-				-1.3
3,962,750	-				-0.7
3,962,750	-				-1.6
3,962,750	-				-1.6
3,962,750	-				-2.2
3,962,759	+				+2.5
3,962,760	-				+0.5
3,962,760	-				+1.2
3,962,770	+				+0.1
3,962,770	+				-1.3
3,962,770	+				-0.8
3,962,770	+				-1.0
3,962,770	+				-0.9
3,962,770	+				+1.8
3,962,770	+				+1.4
3,962,770	+				-1.1
3,962,771	-				-2.1
3,962,780	-				+1.5
3,962,799	-				+2.7
3,962,799	-				+0.1
3,962,799	-				+0.4
3,962,799	-				-0.6
3,962,822	+				+0.5
3,962,823	-				-1.3
3,962,857	+				-2.0
3,962,857	+				-2.7
3,962,891	-		IAI47_18605	0.10	+0.8
3,962,891	-		IAI47_18605	0.10	+0.4
3,962,900	-		IAI47_18605	0.10	-0.4
3,962,943	+		IAI47_18605	0.11	-1.7
3,962,943	+		IAI47_18605	0.11	-1.5
3,962,944	-		IAI47_18605	0.11	-1.6
3,962,944	-		IAI47_18605	0.11	-1.2
3,962,983	+		IAI47_18605	0.12	-2.5
3,962,983	+		IAI47_18605	0.12	-0.6
3,962,983	+		IAI47_18605	0.12	-0.9
3,962,983	+		IAI47_18605	0.12	-1.1
3,962,983	+		IAI47_18605	0.12	+0.3
3,962,983	+		IAI47_18605	0.12	-0.9
3,962,983	+		IAI47_18605	0.12	+4.8
3,962,983	+		IAI47_18605	0.12	-1.9
3,962,984	-		IAI47_18605	0.12	-0.1
3,963,011	+		IAI47_18605	0.13	-1.1
3,963,011	+		IAI47_18605	0.13	-3.0
3,963,011	+		IAI47_18605	0.13	+0.8
3,963,012	-		IAI47_18605	0.13	-2.8
3,963,012	-		IAI47_18605	0.13	-1.0
3,963,037	+		IAI47_18605	0.14	+2.1
3,963,037	+		IAI47_18605	0.14	-1.9
3,963,037	+		IAI47_18605	0.14	-2.4
3,963,037	+		IAI47_18605	0.14	-2.1
3,963,037	+		IAI47_18605	0.14	-0.2
3,963,037	+		IAI47_18605	0.14	+3.4
3,963,037	+		IAI47_18605	0.14	-2.0
3,963,037	+		IAI47_18605	0.14	+0.0
3,963,037	+		IAI47_18605	0.14	+1.6
3,963,037	+		IAI47_18605	0.14	-1.0
3,963,043	+		IAI47_18605	0.14	+1.4
3,963,043	+		IAI47_18605	0.14	-0.5
3,963,044	-		IAI47_18605	0.14	+1.2
3,963,044	-		IAI47_18605	0.14	+1.0