Strain Fitness in Pantoea sp. MT58 around IAI47_17945

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,808,030	+		IAI47_17935	0.76	-1.6
3,808,030	+		IAI47_17935	0.76	+0.1
3,808,031	-		IAI47_17935	0.76	+0.5
3,808,042	+		IAI47_17935	0.78	-2.6
3,808,043	-		IAI47_17935	0.78	-0.3
3,808,043	-		IAI47_17935	0.78	-0.0
3,808,059	+		IAI47_17935	0.80	-2.3
3,808,107	+		IAI47_17935	0.85	-0.5
3,808,107	+		IAI47_17935	0.85	-0.3
3,808,108	-		IAI47_17935	0.85	-1.0
3,808,108	-		IAI47_17935	0.85	-0.8
3,808,158	+				-1.7
3,808,159	-				+1.2
3,808,159	-				+0.1
3,808,159	-				+1.5
3,808,159	-				+1.1
3,808,181	+				+1.3
3,808,182	-				+0.3
3,808,182	-				+0.7
3,808,189	+				+0.2
3,808,189	+				+1.0
3,808,189	+				-0.1
3,808,189	+				-0.7
3,808,189	+				+0.5
3,808,189	+				+0.7
3,808,190	-				+1.3
3,808,190	-				+1.7
3,808,190	-				-3.3
3,808,207	+				-1.4
3,808,207	+				+0.5
3,808,208	-				-1.0
3,808,208	-				-2.9
3,808,263	+				+1.2
3,808,263	+				-0.9
3,808,263	+				-1.8
3,808,264	-				-3.0
3,808,264	-				-1.4
3,808,264	-				+0.2
3,808,264	-				-2.4
3,808,264	-				+2.8
3,808,285	+				-0.4
3,808,293	-				+0.3
3,808,293	-				-0.0
3,808,329	+		IAI47_17940	0.11	-1.7
3,808,355	+		IAI47_17940	0.14	+1.5
3,808,355	+		IAI47_17940	0.14	-1.6
3,808,355	+		IAI47_17940	0.14	+0.7
3,808,355	+		IAI47_17940	0.14	+0.8
3,808,355	+		IAI47_17940	0.14	-1.3
3,808,356	-		IAI47_17940	0.15	-0.5
3,808,356	-		IAI47_17940	0.15	-1.9
3,808,374	+		IAI47_17940	0.17	-0.4
3,808,374	+		IAI47_17940	0.17	+1.8
3,808,512	+		IAI47_17940	0.34	+0.5
3,808,513	-		IAI47_17940	0.34	+0.2
3,808,534	+		IAI47_17940	0.37	+1.6
3,808,535	-		IAI47_17940	0.37	+0.3
3,808,595	-		IAI47_17940	0.45	-1.1
3,808,595	-		IAI47_17940	0.45	-0.8
3,808,595	-		IAI47_17940	0.45	+0.2
3,808,606	-		IAI47_17940	0.46	+0.5
3,808,659	+		IAI47_17940	0.53	+0.8
3,808,659	+		IAI47_17940	0.53	+2.5
3,808,660	-		IAI47_17940	0.53	+2.2
3,808,667	+		IAI47_17940	0.54	-2.0
3,808,682	+		IAI47_17940	0.56	+1.1
3,808,683	-		IAI47_17940	0.56	+0.1
3,808,683	-		IAI47_17940	0.56	-1.1
3,808,687	-		IAI47_17940	0.57	-0.3
3,808,687	-		IAI47_17940	0.57	+0.6
3,808,687	-		IAI47_17940	0.57	-0.6
3,808,706	+		IAI47_17940	0.59	-0.2
3,808,706	+		IAI47_17940	0.59	-1.1
3,808,706	+		IAI47_17940	0.59	-1.9
3,808,706	+		IAI47_17940	0.59	+0.1
3,808,707	-		IAI47_17940	0.59	+0.6
3,808,707	-		IAI47_17940	0.59	-0.8
3,808,707	-		IAI47_17940	0.59	+1.9
3,808,707	-		IAI47_17940	0.59	+2.1
3,808,707	-		IAI47_17940	0.59	-0.5
3,808,707	-		IAI47_17940	0.59	+0.9
3,808,707	-		IAI47_17940	0.59	+0.4
3,808,764	-		IAI47_17940	0.66	+1.9
3,808,764	-		IAI47_17940	0.66	+0.3
3,808,764	-		IAI47_17940	0.66	-0.5
3,808,825	+		IAI47_17940	0.74	-0.5
3,808,825	+		IAI47_17940	0.74	+1.4
3,808,825	+		IAI47_17940	0.74	+0.2
3,808,825	+		IAI47_17940	0.74	+0.6
3,808,826	-		IAI47_17940	0.74	-0.8
3,808,826	-		IAI47_17940	0.74	+0.8
3,808,890	+		IAI47_17940	0.82	-1.3
3,808,891	-		IAI47_17940	0.83	+1.0
3,808,908	+		IAI47_17940	0.85	+0.2
3,808,908	+		IAI47_17940	0.85	-0.5
3,808,909	-		IAI47_17940	0.85	-0.0
3,808,965	+				-0.5
3,809,029	+				-1.5
3,809,030	-				-2.7
3,809,030	-				-0.8
3,809,030	-				-0.8
3,809,036	+				-1.5
3,809,036	+				-1.9
3,809,036	+				+1.4
3,809,036	+				+0.1
3,809,036	+				-1.1
3,809,037	-				+1.3
3,809,037	-				+1.5
3,809,066	+				+0.1
3,809,067	-				-1.9
3,809,067	-				-0.5
3,809,067	-				+1.0
3,809,152	+		IAI47_17945	0.12	-0.7
3,809,152	+		IAI47_17945	0.12	-2.2
3,809,152	+		IAI47_17945	0.12	-0.2
3,809,153	-		IAI47_17945	0.12	-1.3
3,809,153	-		IAI47_17945	0.12	+2.7
3,809,153	-		IAI47_17945	0.12	-0.2
3,809,185	-		IAI47_17945	0.16	+1.4
3,809,227	+		IAI47_17945	0.20	-2.3
3,809,227	+		IAI47_17945	0.20	-0.6
3,809,228	-		IAI47_17945	0.20	+0.1
3,809,228	-		IAI47_17945	0.20	-0.6
3,809,228	-		IAI47_17945	0.20	+0.3
3,809,228	-		IAI47_17945	0.20	+1.5
3,809,228	-		IAI47_17945	0.20	-1.4
3,809,228	-		IAI47_17945	0.20	-2.0
3,809,228	-		IAI47_17945	0.20	+2.8
3,809,279	+		IAI47_17945	0.25	-0.7
3,809,279	+		IAI47_17945	0.25	-1.8
3,809,279	+		IAI47_17945	0.25	+0.8
3,809,279	+		IAI47_17945	0.25	-0.3
3,809,279	+		IAI47_17945	0.25	-2.8
3,809,280	-		IAI47_17945	0.25	+0.6
3,809,280	-		IAI47_17945	0.25	-1.8
3,809,280	-		IAI47_17945	0.25	-0.9
3,809,280	-		IAI47_17945	0.25	-1.8
3,809,280	-		IAI47_17945	0.25	+1.2
3,809,280	-		IAI47_17945	0.25	-1.7
3,809,405	+		IAI47_17945	0.38	-2.7
3,809,406	-		IAI47_17945	0.38	+1.5
3,809,406	-		IAI47_17945	0.38	+0.2
3,809,531	-		IAI47_17945	0.50	-0.1
3,809,693	+		IAI47_17945	0.67	-0.9
3,809,693	+		IAI47_17945	0.67	-1.8
3,809,693	+		IAI47_17945	0.67	+1.0
3,809,693	+		IAI47_17945	0.67	-1.5
3,809,693	+		IAI47_17945	0.67	-0.4
3,809,693	+		IAI47_17945	0.67	+0.5
3,809,693	+		IAI47_17945	0.67	+0.7
3,809,693	+		IAI47_17945	0.67	+2.0
3,809,693	+		IAI47_17945	0.67	-0.8
3,809,693	+		IAI47_17945	0.67	-1.0
3,809,694	-		IAI47_17945	0.67	-0.0
3,809,694	-		IAI47_17945	0.67	+0.8
3,809,694	-		IAI47_17945	0.67	+0.2
3,809,694	-		IAI47_17945	0.67	+0.8
3,809,694	-		IAI47_17945	0.67	+0.2
3,809,694	-		IAI47_17945	0.67	-1.1
3,809,694	-		IAI47_17945	0.67	-1.1
3,809,694	-		IAI47_17945	0.67	+1.5
3,809,694	-		IAI47_17945	0.67	-1.4
3,809,694	-		IAI47_17945	0.67	+0.2
3,809,694	-		IAI47_17945	0.67	+1.2
3,809,694	-		IAI47_17945	0.67	+0.4
3,809,694	-		IAI47_17945	0.67	+0.4
3,809,694	-		IAI47_17945	0.67	-0.0
3,809,694	-		IAI47_17945	0.67	+0.3
3,809,694	-		IAI47_17945	0.67	-1.3
3,809,694	-		IAI47_17945	0.67	-0.5
3,809,696	-		IAI47_17945	0.67	+1.6
3,809,696	-		IAI47_17945	0.67	-0.1
3,809,729	-		IAI47_17945	0.70	-1.5
3,809,738	+		IAI47_17945	0.71	-0.7
3,809,738	+		IAI47_17945	0.71	-0.3
3,809,738	+		IAI47_17945	0.71	-1.6
3,809,738	+		IAI47_17945	0.71	-0.2
3,809,738	+		IAI47_17945	0.71	-0.4
3,809,738	+		IAI47_17945	0.71	-0.1
3,809,738	+		IAI47_17945	0.71	-0.0
3,809,738	+		IAI47_17945	0.71	-1.3
3,809,738	+		IAI47_17945	0.71	-3.0
3,809,739	-		IAI47_17945	0.71	+1.3
3,809,739	-		IAI47_17945	0.71	-1.3
3,809,739	-		IAI47_17945	0.71	+1.0
3,809,739	-		IAI47_17945	0.71	+1.5
3,809,739	-		IAI47_17945	0.71	+1.0
3,809,739	-		IAI47_17945	0.71	-0.1
3,809,739	-		IAI47_17945	0.71	+1.7
3,809,739	-		IAI47_17945	0.71	-0.8
3,809,739	-		IAI47_17945	0.71	+1.1
3,809,739	-		IAI47_17945	0.71	-0.7
3,809,788	+		IAI47_17945	0.76	-0.3
3,809,788	+		IAI47_17945	0.76	-1.8
3,809,789	-		IAI47_17945	0.76	-2.4
3,809,791	+		IAI47_17945	0.77	-0.6
3,809,791	+		IAI47_17945	0.77	+1.4
3,809,791	+		IAI47_17945	0.77	+1.2
3,809,937	+				+0.2
3,809,937	+				-1.2
3,809,937	+				+0.3
3,809,937	+				+0.4
3,809,985	+				+1.4
3,809,986	-				-0.6
3,809,986	-				+0.1
3,809,986	-				+0.1
3,809,991	+				+0.2
3,809,991	+				+2.0
3,809,991	+				-1.2
3,809,992	-				-1.7
3,809,992	-				+1.4
3,810,020	+				-0.8
3,810,020	+				+0.2
3,810,044	+				+0.8
3,810,044	+				-0.9
3,810,044	+				-0.6
3,810,044	+				-0.3
3,810,044	+				+1.0
3,810,044	+				-1.5
3,810,044	+				-1.4
3,810,045	-				-3.0
3,810,045	-				+1.9
3,810,045	-				+0.8
3,810,047	+				-1.4
3,810,047	+				+0.2
3,810,048	-				-1.6
3,810,048	-				+1.3
3,810,048	-				-1.2
3,810,137	-				+1.5
3,810,146	+				+0.7
3,810,146	+				+1.8
3,810,146	+				+0.5
3,810,146	+				+0.8
3,810,146	+				+0.1
3,810,147	-				+1.5
3,810,147	-				+1.1
3,810,147	-				-1.6
3,810,147	-				+2.1
3,810,151	+				-1.1
3,810,151	+				+0.8
3,810,151	+				-2.0
3,810,152	-				+0.5
3,810,152	-				-0.6
3,810,152	-				-0.1
3,810,152	-				+2.3
3,810,152	-				+0.7
3,810,152	-				-2.2
3,810,152	-				-0.2
3,810,152	-				-0.1
3,810,152	-				+2.4
3,810,152	-				+0.1
3,810,188	+				+1.1
3,810,188	+				+0.0
3,810,188	+				-0.6
3,810,188	+				+0.1
3,810,189	-				-0.2
3,810,189	-				+0.9
3,810,189	-				-0.5
3,810,189	-				+0.6
3,810,189	-				-1.4
3,810,189	-				-0.3
3,810,189	-				-0.8
3,810,189	-				+0.4
3,810,216	+				+1.6
3,810,216	+				-0.6
3,810,216	+				-2.4
3,810,216	+				+0.6
3,810,216	+				+1.5
3,810,217	-				+1.1
3,810,217	-				+1.7
3,810,217	-				+0.2
3,810,217	-				+1.6
3,810,217	-				+1.1
3,810,253	+				+0.2
3,810,254	-				+0.4
3,810,254	-				+2.6
3,810,254	-				+0.6
3,810,254	-				+0.5
3,810,383	-		IAI47_17950	0.15	+1.0
3,810,383	-		IAI47_17950	0.15	+0.1
3,810,408	-		IAI47_17950	0.17	+2.3
3,810,426	-		IAI47_17950	0.18	+1.2
3,810,520	+		IAI47_17950	0.24	+1.6
3,810,520	+		IAI47_17950	0.24	-0.2
3,810,593	+		IAI47_17950	0.28	+1.3
3,810,681	-		IAI47_17950	0.34	-1.7
3,810,682	+		IAI47_17950	0.34	+1.3
3,810,687	+		IAI47_17950	0.34	-1.0
3,810,687	+		IAI47_17950	0.34	-0.7
3,810,688	-		IAI47_17950	0.34	+1.2
3,810,688	-		IAI47_17950	0.34	+0.7
3,810,862	+		IAI47_17950	0.45	+0.4
3,810,862	+		IAI47_17950	0.45	-1.2
3,810,862	+		IAI47_17950	0.45	+1.3
3,810,862	+		IAI47_17950	0.45	-1.3
3,810,863	-		IAI47_17950	0.45	-0.9
3,810,863	-		IAI47_17950	0.45	-2.0
3,810,863	-		IAI47_17950	0.45	+1.6
3,810,863	-		IAI47_17950	0.45	+1.0
3,810,866	+		IAI47_17950	0.45	-0.0
3,810,867	-		IAI47_17950	0.45	-0.6
3,810,867	-		IAI47_17950	0.45	-2.3
3,810,867	-		IAI47_17950	0.45	+1.4
3,810,867	-		IAI47_17950	0.45	+0.4
3,810,867	-		IAI47_17950	0.45	-0.4
3,810,867	-		IAI47_17950	0.45	+2.2
3,810,886	+		IAI47_17950	0.46	+0.8
3,810,886	+		IAI47_17950	0.46	+0.9
3,810,887	-		IAI47_17950	0.46	-0.5
3,810,887	-		IAI47_17950	0.46	-0.3
3,810,887	-		IAI47_17950	0.46	+2.0
3,810,887	-		IAI47_17950	0.46	-1.4
3,810,906	-		IAI47_17950	0.48	+0.3
3,810,906	-		IAI47_17950	0.48	-0.5
3,810,914	+		IAI47_17950	0.48	-1.7
3,810,926	+		IAI47_17950	0.49	+0.9
3,810,926	+		IAI47_17950	0.49	+2.2
3,810,926	+		IAI47_17950	0.49	+1.8
3,810,927	-		IAI47_17950	0.49	+0.3
3,810,927	-		IAI47_17950	0.49	-0.3
3,810,927	-		IAI47_17950	0.49	+1.2
3,810,927	-		IAI47_17950	0.49	+1.7
3,810,975	+		IAI47_17950	0.52	+1.2
3,810,975	+		IAI47_17950	0.52	+0.8
3,810,976	-		IAI47_17950	0.52	-1.6