Strain Fitness in Pantoea sp. MT58 around IAI47_12875

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,717,452	+		IAI47_12870	0.65	+1.5
2,717,452	+		IAI47_12870	0.65	-1.4
2,717,453	-		IAI47_12870	0.65	+1.1
2,717,453	-		IAI47_12870	0.65	-1.4
2,717,453	-		IAI47_12870	0.65	+0.7
2,717,487	+		IAI47_12870	0.67	-0.0
2,717,487	+		IAI47_12870	0.67	-0.9
2,717,487	+		IAI47_12870	0.67	+1.9
2,717,487	+		IAI47_12870	0.67	+2.9
2,717,487	+		IAI47_12870	0.67	+0.9
2,717,487	+		IAI47_12870	0.67	+1.4
2,717,488	-		IAI47_12870	0.67	-0.8
2,717,491	+		IAI47_12870	0.67	-0.8
2,717,491	+		IAI47_12870	0.67	+0.2
2,717,491	+		IAI47_12870	0.67	-1.1
2,717,491	+		IAI47_12870	0.67	+2.3
2,717,492	-		IAI47_12870	0.67	+0.8
2,717,492	-		IAI47_12870	0.67	+0.2
2,717,492	-		IAI47_12870	0.67	-1.2
2,717,507	-		IAI47_12870	0.68	-0.5
2,717,520	+		IAI47_12870	0.68	+0.2
2,717,520	+		IAI47_12870	0.68	-1.3
2,717,521	-		IAI47_12870	0.69	-0.4
2,717,521	-		IAI47_12870	0.69	+1.8
2,717,590	+		IAI47_12870	0.72	-0.7
2,717,590	+		IAI47_12870	0.72	-0.1
2,717,590	+		IAI47_12870	0.72	+1.8
2,717,591	-		IAI47_12870	0.73	+2.2
2,717,591	-		IAI47_12870	0.73	-1.5
2,717,591	-		IAI47_12870	0.73	-1.2
2,717,591	-		IAI47_12870	0.73	-0.1
2,717,591	-		IAI47_12870	0.73	+1.0
2,717,689	+		IAI47_12870	0.78	+1.1
2,717,689	+		IAI47_12870	0.78	-2.0
2,717,690	-		IAI47_12870	0.78	+0.9
2,717,690	-		IAI47_12870	0.78	+1.3
2,717,711	+		IAI47_12870	0.79	-1.6
2,717,711	+		IAI47_12870	0.79	-0.2
2,717,711	+		IAI47_12870	0.79	+0.1
2,717,712	-		IAI47_12870	0.79	-0.6
2,717,760	-		IAI47_12870	0.82	-1.2
2,717,785	-		IAI47_12870	0.84	-1.0
2,717,800	-		IAI47_12870	0.84	-0.7
2,717,815	-		IAI47_12870	0.85	+0.9
2,717,818	+		IAI47_12870	0.85	+1.1
2,717,818	+		IAI47_12870	0.85	+0.1
2,717,818	+		IAI47_12870	0.85	-3.4
2,717,818	+		IAI47_12870	0.85	-0.6
2,717,818	+		IAI47_12870	0.85	+2.7
2,717,818	+		IAI47_12870	0.85	+0.3
2,717,818	+		IAI47_12870	0.85	+1.6
2,717,818	+		IAI47_12870	0.85	+2.0
2,717,818	+		IAI47_12870	0.85	-0.8
2,717,818	+		IAI47_12870	0.85	-1.3
2,717,818	+		IAI47_12870	0.85	-0.1
2,717,818	+		IAI47_12870	0.85	-1.6
2,717,819	-		IAI47_12870	0.85	-1.0
2,717,819	-		IAI47_12870	0.85	+2.5
2,717,819	-		IAI47_12870	0.85	-1.2
2,717,819	-		IAI47_12870	0.85	-0.3
2,717,819	-		IAI47_12870	0.85	+0.9
2,717,821	+		IAI47_12870	0.86	-0.5
2,717,821	+		IAI47_12870	0.86	+1.4
2,717,821	+		IAI47_12870	0.86	-1.3
2,717,821	+		IAI47_12870	0.86	+1.1
2,717,881	+		IAI47_12870	0.89	+0.8
2,717,881	+		IAI47_12870	0.89	+0.0
2,717,881	+		IAI47_12870	0.89	-1.1
2,717,881	+		IAI47_12870	0.89	-1.6
2,717,882	-		IAI47_12870	0.89	-0.6
2,717,882	-		IAI47_12870	0.89	+0.5
2,717,882	-		IAI47_12870	0.89	+0.2
2,717,901	+				-0.3
2,717,901	+				+0.0
2,717,901	+				+1.0
2,717,901	+				+2.1
2,717,901	+				+1.1
2,717,901	+				-0.3
2,717,901	+				+1.2
2,717,901	+				-0.6
2,717,902	-				+1.2
2,717,902	-				+1.8
2,717,902	-				+0.2
2,717,902	-				+2.6
2,717,902	-				-0.6
2,717,902	-				+0.7
2,717,905	+				+0.7
2,717,905	+				+1.7
2,717,905	+				-0.1
2,717,905	+				+0.1
2,717,905	+				+1.5
2,717,905	+				-0.5
2,717,905	+				-0.7
2,717,906	-				+1.2
2,717,906	-				-1.0
2,717,906	-				+0.9
2,717,961	+				+0.9
2,718,028	+				+1.3
2,718,029	-				+0.7
2,718,059	-				+1.9
2,718,073	+				-1.1
2,718,073	+				-0.2
2,718,073	+				+1.3
2,718,074	-				-2.0
2,718,074	-				+1.5
2,718,078	+				-0.5
2,718,078	+				-0.5
2,718,078	+				+0.8
2,718,079	-				-1.4
2,718,079	-				-2.3
2,718,079	-				-2.4
2,718,079	-				+0.2
2,718,079	-				-2.5
2,718,079	-				+0.5
2,718,081	-				-1.2
2,718,107	-				-1.5
2,718,107	-				+2.0
2,718,107	-				+0.5
2,718,135	+				+0.9
2,718,135	+				-1.0
2,718,162	+				+2.1
2,718,162	+				+0.2
2,718,162	+				+1.8
2,718,162	+				+2.2
2,718,163	-				+1.2
2,718,163	-				+2.5
2,718,163	-				-0.1
2,718,168	+				+2.4
2,718,168	+				+0.3
2,718,169	-				+0.3
2,718,171	+				+1.3
2,718,202	-				+1.2
2,718,205	+				-1.2
2,718,210	+				-0.2
2,718,210	+				+0.3
2,718,211	-				+0.9
2,718,220	+				-0.9
2,718,221	-				+1.4
2,718,224	+				+0.9
2,718,224	+				-1.9
2,718,224	+				-0.1
2,718,224	+				+0.2
2,718,224	+				+0.3
2,718,225	-				-1.9
2,718,225	-				-1.0
2,718,252	+				-0.8
2,718,253	-				-0.7
2,718,351	-				-0.1
2,718,381	+				-0.6
2,718,396	+				-0.5
2,718,396	+				-3.0
2,718,396	+				-0.8
2,718,396	+				-0.4
2,718,396	+				-2.6
2,718,396	+				-2.7
2,718,396	+				-1.9
2,718,397	-				-0.3
2,718,397	-				-1.6
2,718,398	+				-2.5
2,718,399	-				-0.7
2,718,399	-				-0.4
2,718,409	+				-0.1
2,718,410	-				-0.6
2,718,436	+				-0.8
2,718,437	-				-0.1
2,718,441	+				-1.9
2,718,442	-				-0.3
2,718,513	+				+0.3
2,718,517	+				-3.1
2,718,517	+				-1.2
2,718,517	+				-0.1
2,718,517	+				-1.4
2,718,517	+				+0.2
2,718,518	-				-1.9
2,718,519	+				-1.1
2,718,520	-				-1.4
2,718,572	+		IAI47_12875	0.15	+0.6
2,718,572	+		IAI47_12875	0.15	-0.5
2,718,572	+		IAI47_12875	0.15	-0.2
2,718,573	-		IAI47_12875	0.15	-1.5
2,718,573	-		IAI47_12875	0.15	-3.6
2,718,576	+		IAI47_12875	0.15	+0.3
2,718,576	+		IAI47_12875	0.15	-0.2
2,718,577	-		IAI47_12875	0.15	-0.7
2,718,601	-		IAI47_12875	0.18	-0.5
2,718,603	+		IAI47_12875	0.18	+1.8
2,718,603	+		IAI47_12875	0.18	-0.7
2,718,603	+		IAI47_12875	0.18	-2.1
2,718,603	+		IAI47_12875	0.18	-1.0
2,718,635	-		IAI47_12875	0.22	-1.2
2,718,641	+		IAI47_12875	0.23	-2.4
2,718,642	-		IAI47_12875	0.23	-1.3
2,718,714	+		IAI47_12875	0.31	-0.9
2,718,714	+		IAI47_12875	0.31	+0.3
2,718,714	+		IAI47_12875	0.31	+1.3
2,718,714	+		IAI47_12875	0.31	-2.2
2,718,714	+		IAI47_12875	0.31	+0.2
2,718,714	+		IAI47_12875	0.31	-0.8
2,718,714	+		IAI47_12875	0.31	-0.7
2,718,720	+		IAI47_12875	0.32	+0.5
2,718,721	-		IAI47_12875	0.32	+0.1
2,718,721	-		IAI47_12875	0.32	-2.5
2,718,858	+		IAI47_12875	0.48	+1.1
2,718,858	+		IAI47_12875	0.48	+1.2
2,718,858	+		IAI47_12875	0.48	-0.3
2,718,858	+		IAI47_12875	0.48	+1.2
2,718,858	+		IAI47_12875	0.48	-1.6
2,718,858	+		IAI47_12875	0.48	-1.2
2,718,858	+		IAI47_12875	0.48	+0.4
2,718,859	-		IAI47_12875	0.48	-1.7
2,718,859	-		IAI47_12875	0.48	-1.4
2,718,859	-		IAI47_12875	0.48	-2.6
2,718,859	-		IAI47_12875	0.48	-1.8
2,718,859	-		IAI47_12875	0.48	-2.2
2,718,859	-		IAI47_12875	0.48	-1.2
2,718,859	-		IAI47_12875	0.48	-1.4
2,718,859	-		IAI47_12875	0.48	-1.9
2,718,859	-		IAI47_12875	0.48	-0.1
2,718,859	-		IAI47_12875	0.48	-0.7
2,718,949	-		IAI47_12875	0.59	-1.9
2,718,991	+		IAI47_12875	0.63	-0.3
2,718,991	+		IAI47_12875	0.63	-1.2
2,718,992	-		IAI47_12875	0.64	-0.3
2,718,992	-		IAI47_12875	0.64	-1.1
2,719,083	+		IAI47_12875	0.74	-0.0
2,719,083	+		IAI47_12875	0.74	+0.2
2,719,083	+		IAI47_12875	0.74	-0.8
2,719,083	+		IAI47_12875	0.74	-0.3
2,719,084	-		IAI47_12875	0.74	-1.1
2,719,084	-		IAI47_12875	0.74	-1.3
2,719,084	-		IAI47_12875	0.74	-2.6
2,719,100	-		IAI47_12875	0.76	-2.2
2,719,100	-		IAI47_12875	0.76	-2.3
2,719,100	-		IAI47_12875	0.76	-0.5
2,719,194	+		IAI47_12875	0.87	-2.2
2,719,194	+		IAI47_12875	0.87	-1.6
2,719,264	+				-1.6
2,719,265	-				-2.2
2,719,265	-				-2.3
2,719,265	-				-1.6
2,719,272	+				+2.5
2,719,272	+				+0.6
2,719,272	+				-0.9
2,719,272	+				+0.1
2,719,273	-				-2.4
2,719,276	+				+0.6
2,719,276	+				+1.5
2,719,276	+				+2.7
2,719,276	+				-0.3
2,719,277	-				-2.1
2,719,303	+				-1.1
2,719,304	-				-1.1
2,719,304	-				-1.4
2,719,347	-				-0.5
2,719,359	+				-1.1
2,719,359	+				-1.6
2,719,359	+				-0.3
2,719,360	-				-1.5
2,719,360	-				-1.3
2,719,360	-				-3.7
2,719,360	-				-3.2
2,719,361	+				-1.8
2,719,361	+				-3.2
2,719,361	+				-1.5
2,719,361	+				-1.8
2,719,361	+				-2.3
2,719,362	-				-2.8
2,719,362	-				-0.5
2,719,362	-				-0.5
2,719,362	-				-2.2
2,719,370	+				-2.2
2,719,370	+				-2.1
2,719,370	+				-2.2
2,719,370	+				-1.4
2,719,370	+				-0.1
2,719,370	+				-1.5
2,719,370	+				-2.8
2,719,370	+				-1.8
2,719,371	-				-0.3
2,719,371	-				-2.3
2,719,371	-				-3.3
2,719,371	-				-1.5
2,719,371	-				-2.5
2,719,372	+				-0.5
2,719,372	+				-1.8
2,719,372	+				-3.4
2,719,372	+				-3.4
2,719,373	-				-3.5
2,719,375	+				-0.8
2,719,375	+				-0.3
2,719,375	+				-3.6
2,719,376	-				-1.7
2,719,376	-				-3.4
2,719,376	-				-4.5
2,719,387	+				-2.4
2,719,387	+				+0.3
2,719,387	+				-1.9
2,719,388	-				-2.2
2,719,442	-				-1.9
2,719,484	+				-0.7
2,719,484	+				+0.0
2,719,485	-				+0.3
2,719,485	-				-3.0
2,719,485	-				-3.0
2,719,485	-				-0.8
2,719,531	+				-1.5
2,719,531	+				-1.4
2,719,532	-				-0.9
2,719,621	+		IAI47_12880	0.11	-1.1
2,719,621	+		IAI47_12880	0.11	-2.3
2,719,621	+		IAI47_12880	0.11	-3.9
2,719,621	+		IAI47_12880	0.11	-2.0
2,719,622	-		IAI47_12880	0.11	-3.0
2,719,640	+		IAI47_12880	0.12	-1.6
2,719,640	+		IAI47_12880	0.12	-3.3
2,719,641	-		IAI47_12880	0.12	-1.3
2,719,641	-		IAI47_12880	0.12	-2.0
2,719,641	-		IAI47_12880	0.12	-1.7
2,719,641	-		IAI47_12880	0.12	-1.1
2,719,641	-		IAI47_12880	0.12	-2.7
2,719,641	-		IAI47_12880	0.12	-1.5
2,719,641	-		IAI47_12880	0.12	-0.4
2,719,648	+		IAI47_12880	0.12	-2.8
2,719,648	+		IAI47_12880	0.12	-1.7
2,719,649	-		IAI47_12880	0.12	-1.8
2,719,649	-		IAI47_12880	0.12	-1.6
2,719,693	-		IAI47_12880	0.14	-3.0
2,719,693	-		IAI47_12880	0.14	-0.8
2,719,751	+		IAI47_12880	0.16	-1.2
2,719,751	+		IAI47_12880	0.16	+1.1
2,719,752	-		IAI47_12880	0.16	-2.3
2,719,752	-		IAI47_12880	0.16	-2.0
2,719,796	+		IAI47_12880	0.18	-1.8
2,719,801	+		IAI47_12880	0.19	-2.1
2,719,802	-		IAI47_12880	0.19	+0.1
2,719,811	-		IAI47_12880	0.19	-0.1
2,719,832	+		IAI47_12880	0.20	-0.7
2,719,832	+		IAI47_12880	0.20	-4.8
2,719,832	+		IAI47_12880	0.20	-1.2
2,719,832	+		IAI47_12880	0.20	-3.0
2,719,833	-		IAI47_12880	0.20	-3.4
2,719,867	+		IAI47_12880	0.22	-2.1
2,719,868	-		IAI47_12880	0.22	-0.5
2,719,892	+		IAI47_12880	0.23	-0.9
2,719,892	+		IAI47_12880	0.23	-0.1
2,719,893	-		IAI47_12880	0.23	-2.3
2,719,920	-		IAI47_12880	0.24	-1.5
2,719,937	+		IAI47_12880	0.25	-2.0
2,719,938	-		IAI47_12880	0.25	-0.5
2,719,964	-		IAI47_12880	0.26	-0.7
2,719,964	-		IAI47_12880	0.26	-3.1
2,719,998	+		IAI47_12880	0.27	-1.4
2,720,078	-		IAI47_12880	0.31	-4.3
2,720,096	+		IAI47_12880	0.32	-2.5
2,720,097	-		IAI47_12880	0.32	+1.1
2,720,142	+		IAI47_12880	0.34	-2.0
2,720,153	+		IAI47_12880	0.34	-0.5
2,720,153	+		IAI47_12880	0.34	-2.8
2,720,153	+		IAI47_12880	0.34	-0.1
2,720,153	+		IAI47_12880	0.34	-1.6
2,720,153	+		IAI47_12880	0.34	-3.3
2,720,153	+		IAI47_12880	0.34	-1.3
2,720,154	-		IAI47_12880	0.34	-1.7
2,720,154	-		IAI47_12880	0.34	-2.6
2,720,154	-		IAI47_12880	0.34	-1.9
2,720,154	-		IAI47_12880	0.34	+0.0
2,720,154	-		IAI47_12880	0.34	-1.4
2,720,154	-		IAI47_12880	0.34	-0.3
2,720,154	-		IAI47_12880	0.34	-3.7
2,720,154	-		IAI47_12880	0.34	+0.1
2,720,154	-		IAI47_12880	0.34	-1.2
2,720,154	-		IAI47_12880	0.34	-2.3
2,720,156	+		IAI47_12880	0.34	-1.0
2,720,156	+		IAI47_12880	0.34	-1.1
2,720,156	+		IAI47_12880	0.34	-2.2
2,720,156	+		IAI47_12880	0.34	-2.9
2,720,157	-		IAI47_12880	0.34	-3.5
2,720,157	-		IAI47_12880	0.34	-1.1
2,720,157	-		IAI47_12880	0.34	-0.1
2,720,157	-		IAI47_12880	0.34	-2.2
2,720,162	+		IAI47_12880	0.34	-2.5
2,720,177	-		IAI47_12880	0.35	-4.1
2,720,234	+		IAI47_12880	0.38	-2.1
2,720,234	+		IAI47_12880	0.38	-2.5
2,720,234	+		IAI47_12880	0.38	-1.6
2,720,234	+		IAI47_12880	0.38	-2.5
2,720,235	-		IAI47_12880	0.38	-1.4
2,720,251	+		IAI47_12880	0.38	-2.6
2,720,252	-		IAI47_12880	0.38	-2.6