Strain Fitness in Pantoea sp. MT58 around IAI47_11590

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,457,065	-				-0.6
2,457,157	+		IAI47_11585	0.16	-0.9
2,457,157	+		IAI47_11585	0.16	+1.0
2,457,158	-		IAI47_11585	0.17	+0.1
2,457,158	-		IAI47_11585	0.17	-1.3
2,457,158	-		IAI47_11585	0.17	+1.3
2,457,158	-		IAI47_11585	0.17	+0.1
2,457,158	-		IAI47_11585	0.17	-0.5
2,457,217	+		IAI47_11585	0.22	-2.5
2,457,218	-		IAI47_11585	0.22	-0.3
2,457,218	-		IAI47_11585	0.22	+0.8
2,457,274	-		IAI47_11585	0.28	-2.1
2,457,274	-		IAI47_11585	0.28	+1.2
2,457,274	-		IAI47_11585	0.28	-1.2
2,457,406	+		IAI47_11585	0.40	+3.2
2,457,407	-		IAI47_11585	0.40	+0.4
2,457,407	-		IAI47_11585	0.40	+0.3
2,457,548	-		IAI47_11585	0.54	+0.2
2,457,548	-		IAI47_11585	0.54	-0.1
2,457,548	-		IAI47_11585	0.54	+0.1
2,457,548	-		IAI47_11585	0.54	-2.3
2,457,548	-		IAI47_11585	0.54	-0.7
2,457,616	+		IAI47_11585	0.60	-2.4
2,457,616	+		IAI47_11585	0.60	-1.6
2,457,617	-		IAI47_11585	0.60	+0.2
2,457,617	-		IAI47_11585	0.60	-1.6
2,457,617	-		IAI47_11585	0.60	+0.8
2,457,703	+		IAI47_11585	0.69	-0.5
2,457,703	+		IAI47_11585	0.69	-2.7
2,457,703	+		IAI47_11585	0.69	+2.2
2,457,703	+		IAI47_11585	0.69	-1.1
2,457,704	-		IAI47_11585	0.69	+0.2
2,457,757	+		IAI47_11585	0.74	+0.6
2,457,757	+		IAI47_11585	0.74	+1.3
2,457,758	-		IAI47_11585	0.74	+0.2
2,457,758	-		IAI47_11585	0.74	-0.1
2,457,852	+		IAI47_11585	0.83	+1.0
2,457,944	-				-0.1
2,458,010	+				-1.3
2,458,010	+				+0.2
2,458,011	-				+0.6
2,458,031	+				+1.7
2,458,031	+				+0.9
2,458,031	+				-1.7
2,458,031	+				-1.0
2,458,031	+				-1.1
2,458,032	-				+3.0
2,458,032	-				+2.5
2,458,032	-				-1.2
2,458,117	+				+1.1
2,458,117	+				+0.7
2,458,117	+				+1.6
2,458,118	-				+1.3
2,458,118	-				+0.1
2,458,118	-				-0.5
2,458,118	-				-0.6
2,458,151	+				-1.1
2,458,152	-				+2.3
2,458,279	+		IAI47_11590	0.13	-1.9
2,458,280	-		IAI47_11590	0.13	+1.3
2,458,331	-		IAI47_11590	0.16	-1.7
2,458,335	+		IAI47_11590	0.16	-2.4
2,458,335	+		IAI47_11590	0.16	-0.1
2,458,401	+		IAI47_11590	0.20	+0.2
2,458,401	+		IAI47_11590	0.20	+0.9
2,458,401	+		IAI47_11590	0.20	+0.1
2,458,401	+		IAI47_11590	0.20	-2.4
2,458,401	+		IAI47_11590	0.20	+0.5
2,458,402	-		IAI47_11590	0.20	-1.7
2,458,402	-		IAI47_11590	0.20	+0.8
2,458,402	-		IAI47_11590	0.20	-1.9
2,458,570	+		IAI47_11590	0.29	+1.0
2,458,570	+		IAI47_11590	0.29	+0.6
2,458,571	-		IAI47_11590	0.29	-0.7
2,458,571	-		IAI47_11590	0.29	+1.3
2,458,571	-		IAI47_11590	0.29	+1.3
2,458,571	-		IAI47_11590	0.29	-0.6
2,458,571	-		IAI47_11590	0.29	-0.3
2,458,593	+		IAI47_11590	0.30	-0.7
2,458,593	+		IAI47_11590	0.30	+2.4
2,458,594	-		IAI47_11590	0.30	-0.8
2,458,594	-		IAI47_11590	0.30	+0.0
2,458,663	-		IAI47_11590	0.34	+0.7
2,458,731	+		IAI47_11590	0.38	+0.5
2,458,731	+		IAI47_11590	0.38	-1.6
2,458,731	+		IAI47_11590	0.38	-2.7
2,458,731	+		IAI47_11590	0.38	+2.8
2,458,732	-		IAI47_11590	0.38	+2.9
2,458,741	-		IAI47_11590	0.38	-1.9
2,458,741	-		IAI47_11590	0.38	-1.7
2,458,741	-		IAI47_11590	0.38	+0.6
2,458,784	+		IAI47_11590	0.40	-2.3
2,458,809	-		IAI47_11590	0.42	+0.5
2,458,809	-		IAI47_11590	0.42	+0.1
2,458,845	+		IAI47_11590	0.44	+1.2
2,458,845	+		IAI47_11590	0.44	-1.4
2,458,865	-		IAI47_11590	0.45	-0.8
2,458,881	+		IAI47_11590	0.46	+0.9
2,458,881	+		IAI47_11590	0.46	+0.8
2,458,881	+		IAI47_11590	0.46	-1.6
2,458,882	-		IAI47_11590	0.46	-0.1
2,458,882	-		IAI47_11590	0.46	-2.9
2,458,936	+		IAI47_11590	0.49	-0.3
2,458,937	-		IAI47_11590	0.49	-0.5
2,459,020	+		IAI47_11590	0.53	-0.5
2,459,020	+		IAI47_11590	0.53	-1.3
2,459,020	+		IAI47_11590	0.53	+2.4
2,459,020	+		IAI47_11590	0.53	+0.4
2,459,021	-		IAI47_11590	0.53	+0.9
2,459,083	+		IAI47_11590	0.56	+1.4
2,459,113	-		IAI47_11590	0.58	-1.7
2,459,113	-		IAI47_11590	0.58	-0.4
2,459,130	+		IAI47_11590	0.59	-0.6
2,459,254	+		IAI47_11590	0.65	+0.1
2,459,254	+		IAI47_11590	0.65	+0.1
2,459,254	+		IAI47_11590	0.65	-0.4
2,459,255	-		IAI47_11590	0.66	-0.0
2,459,258	+		IAI47_11590	0.66	+0.7
2,459,303	-		IAI47_11590	0.68	+0.4
2,459,511	+		IAI47_11590	0.79	-2.5
2,459,512	-		IAI47_11590	0.79	+0.7
2,459,512	-		IAI47_11590	0.79	+1.4
2,459,512	-		IAI47_11590	0.79	-0.4
2,459,512	-		IAI47_11590	0.79	+1.3
2,459,591	-		IAI47_11590	0.83	-1.5
2,459,652	+		IAI47_11590	0.87	+0.3
2,459,652	+		IAI47_11590	0.87	-1.5
2,459,652	+		IAI47_11590	0.87	-0.3
2,459,652	+		IAI47_11590	0.87	-1.6
2,459,652	+		IAI47_11590	0.87	+0.4
2,459,653	-		IAI47_11590	0.87	+0.3
2,459,653	-		IAI47_11590	0.87	-0.7
2,459,653	-		IAI47_11590	0.87	-1.9
2,459,653	-		IAI47_11590	0.87	+0.5
2,459,653	-		IAI47_11590	0.87	-1.4
2,459,653	-		IAI47_11590	0.87	-1.1
2,459,653	-		IAI47_11590	0.87	-0.7
2,459,653	-		IAI47_11590	0.87	+0.4
2,459,767	-				-1.3
2,459,767	-				+0.6
2,459,767	-				-0.4
2,459,767	-				-0.7
2,459,785	+				+0.5
2,459,786	-				+0.0
2,459,786	-				+1.9
2,459,786	-				+0.7
2,459,786	-				-0.1
2,459,786	-				-0.2
2,459,874	+				+0.5
2,459,874	+				+1.4
2,459,874	+				+1.9
2,459,874	+				-0.7
2,459,874	+				-1.1
2,459,875	-				+0.1
2,459,875	-				+1.6
2,459,875	-				-2.1
2,459,875	-				+0.9
2,459,875	-				+2.1
2,459,875	-				+1.3
2,459,875	-				-0.0
2,459,875	-				+1.3
2,459,877	+				+0.9
2,459,878	-				+1.1
2,459,976	-		IAI47_11595	0.13	+0.9
2,459,976	-		IAI47_11595	0.13	+2.3
2,460,081	+		IAI47_11595	0.31	+0.4
2,460,127	-		IAI47_11595	0.39	-0.9
2,460,238	-		IAI47_11595	0.58	-0.8
2,460,240	+		IAI47_11595	0.59	-0.7
2,460,240	+		IAI47_11595	0.59	-0.8
2,460,240	+		IAI47_11595	0.59	-0.1
2,460,240	+		IAI47_11595	0.59	+1.5
2,460,241	-		IAI47_11595	0.59	+1.7
2,460,241	-		IAI47_11595	0.59	-3.4
2,460,241	-		IAI47_11595	0.59	+1.0
2,460,241	-		IAI47_11595	0.59	-3.3
2,460,241	-		IAI47_11595	0.59	-0.9
2,460,241	-		IAI47_11595	0.59	+1.6
2,460,241	-		IAI47_11595	0.59	+0.1
2,460,243	+		IAI47_11595	0.59	-1.8
2,460,243	+		IAI47_11595	0.59	+0.8
2,460,243	+		IAI47_11595	0.59	+0.5
2,460,243	+		IAI47_11595	0.59	+2.2
2,460,243	+		IAI47_11595	0.59	-1.3
2,460,243	+		IAI47_11595	0.59	+0.5
2,460,244	-		IAI47_11595	0.59	-1.5
2,460,244	-		IAI47_11595	0.59	-0.2
2,460,244	-		IAI47_11595	0.59	+0.0
2,460,444	-				+2.1
2,460,444	-				+1.5
2,460,490	+				+2.4
2,460,491	-				-0.4
2,460,491	-				-0.9
2,460,491	-				+1.2
2,460,583	+		IAI47_11600	0.14	-1.3
2,460,583	+		IAI47_11600	0.14	+0.0
2,460,584	-		IAI47_11600	0.14	+4.9
2,460,658	-		IAI47_11600	0.23	+3.7
2,460,789	+		IAI47_11600	0.39	+0.7
2,460,790	-		IAI47_11600	0.39	-0.5
2,460,792	+		IAI47_11600	0.39	-1.7
2,460,793	-		IAI47_11600	0.39	+1.8