Strain Fitness in Pantoea sp. MT58 around IAI47_10275

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,169,941	+		IAI47_10270	0.34	-0.4
2,169,979	+		IAI47_10270	0.37	+1.3
2,169,980	-		IAI47_10270	0.38	-0.2
2,170,050	+		IAI47_10270	0.43	+0.2
2,170,050	+		IAI47_10270	0.43	-0.3
2,170,130	+		IAI47_10270	0.50	-0.9
2,170,130	+		IAI47_10270	0.50	-0.4
2,170,130	+		IAI47_10270	0.50	+1.7
2,170,131	-		IAI47_10270	0.50	-0.6
2,170,166	+		IAI47_10270	0.53	+1.8
2,170,167	-		IAI47_10270	0.53	+2.2
2,170,167	-		IAI47_10270	0.53	-0.6
2,170,167	-		IAI47_10270	0.53	-2.7
2,170,201	-		IAI47_10270	0.56	-0.9
2,170,249	+		IAI47_10270	0.60	-2.1
2,170,249	+		IAI47_10270	0.60	+0.9
2,170,250	-		IAI47_10270	0.61	-0.5
2,170,359	-		IAI47_10270	0.70	+2.1
2,170,435	+		IAI47_10270	0.76	-0.7
2,170,440	+		IAI47_10270	0.77	-0.7
2,170,441	-		IAI47_10270	0.77	-1.6
2,170,441	-		IAI47_10270	0.77	-1.8
2,170,598	-				+3.3
2,170,640	+				-0.9
2,170,673	+				+0.3
2,170,673	+				-0.8
2,170,721	+				+0.6
2,170,734	-				-2.2
2,170,776	+				-0.6
2,170,777	-				-0.7
2,170,826	+				+1.4
2,170,826	+				-0.9
2,170,826	+				-1.2
2,170,826	+				+2.2
2,170,827	-				+1.1
2,170,827	-				+1.3
2,170,827	-				+0.1
2,170,827	-				+1.7
2,170,836	+				-2.2
2,170,870	+				+1.9
2,170,933	+				+0.7
2,170,933	+				+0.7
2,170,933	+				+1.2
2,170,956	+				-1.0
2,170,956	+				-0.4
2,170,957	-				+1.3
2,171,027	+		IAI47_10275	0.10	-0.5
2,171,027	+		IAI47_10275	0.10	+2.3
2,171,028	-		IAI47_10275	0.10	+0.7
2,171,067	+		IAI47_10275	0.13	+1.7
2,171,068	-		IAI47_10275	0.13	+1.0
2,171,076	-		IAI47_10275	0.14	-1.6
2,171,076	-		IAI47_10275	0.14	-0.6
2,171,076	-		IAI47_10275	0.14	-1.7
2,171,178	-		IAI47_10275	0.21	+1.2
2,171,178	-		IAI47_10275	0.21	+1.4
2,171,178	-		IAI47_10275	0.21	+1.2
2,171,262	+		IAI47_10275	0.27	+2.1
2,171,262	+		IAI47_10275	0.27	-0.6
2,171,262	+		IAI47_10275	0.27	+0.4
2,171,262	+		IAI47_10275	0.27	+1.1
2,171,262	+		IAI47_10275	0.27	+0.4
2,171,262	+		IAI47_10275	0.27	+1.0
2,171,262	+		IAI47_10275	0.27	+1.3
2,171,263	-		IAI47_10275	0.27	+3.4
2,171,263	-		IAI47_10275	0.27	-1.7
2,171,263	-		IAI47_10275	0.27	+0.5
2,171,263	-		IAI47_10275	0.27	+0.1
2,171,263	-		IAI47_10275	0.27	+1.1
2,171,263	-		IAI47_10275	0.27	+0.8
2,171,268	+		IAI47_10275	0.28	-0.3
2,171,268	+		IAI47_10275	0.28	+2.8
2,171,268	+		IAI47_10275	0.28	+0.6
2,171,269	-		IAI47_10275	0.28	-0.2
2,171,269	-		IAI47_10275	0.28	-1.3
2,171,269	-		IAI47_10275	0.28	+1.5
2,171,282	+		IAI47_10275	0.29	+1.2
2,171,385	-		IAI47_10275	0.36	+2.0
2,171,385	-		IAI47_10275	0.36	+0.9
2,171,530	+		IAI47_10275	0.47	+0.6
2,171,531	-		IAI47_10275	0.47	+0.9
2,171,559	+		IAI47_10275	0.49	+1.6
2,171,559	+		IAI47_10275	0.49	+2.1
2,171,566	+		IAI47_10275	0.49	+0.9
2,171,615	+		IAI47_10275	0.53	+0.8
2,171,615	+		IAI47_10275	0.53	-0.3
2,171,616	-		IAI47_10275	0.53	-0.4
2,171,633	+		IAI47_10275	0.54	+1.6
2,171,634	-		IAI47_10275	0.54	+1.1
2,171,634	-		IAI47_10275	0.54	-0.0
2,171,634	-		IAI47_10275	0.54	+0.1
2,171,672	+		IAI47_10275	0.57	+1.3
2,171,689	+		IAI47_10275	0.58	+1.5
2,171,689	+		IAI47_10275	0.58	-0.2
2,171,690	-		IAI47_10275	0.58	+0.0
2,171,690	-		IAI47_10275	0.58	-0.5
2,171,694	-		IAI47_10275	0.58	+2.9
2,171,768	-		IAI47_10275	0.64	+0.6
2,171,853	-		IAI47_10275	0.70	+2.0
2,171,870	-		IAI47_10275	0.71	+0.3
2,171,888	+		IAI47_10275	0.72	+2.4
2,171,888	+		IAI47_10275	0.72	-0.3
2,171,888	+		IAI47_10275	0.72	+1.3
2,171,889	-		IAI47_10275	0.73	+1.6
2,171,889	-		IAI47_10275	0.73	+1.6
2,171,889	-		IAI47_10275	0.73	-0.5
2,171,889	-		IAI47_10275	0.73	+3.0
2,171,938	+		IAI47_10275	0.76	+1.0
2,171,938	+		IAI47_10275	0.76	+0.2
2,171,939	-		IAI47_10275	0.76	+0.5
2,171,939	-		IAI47_10275	0.76	+0.8
2,171,969	+		IAI47_10275	0.78	+1.3
2,171,997	-		IAI47_10275	0.80	+0.8
2,172,059	+		IAI47_10275	0.85	-0.5
2,172,059	+		IAI47_10275	0.85	+2.0
2,172,059	+		IAI47_10275	0.85	-0.4
2,172,060	-		IAI47_10275	0.85	-0.6
2,172,062	+		IAI47_10275	0.85	+0.2
2,172,062	+		IAI47_10275	0.85	+0.7
2,172,062	+		IAI47_10275	0.85	+1.2
2,172,063	-		IAI47_10275	0.85	+1.4
2,172,063	-		IAI47_10275	0.85	-1.1
2,172,063	-		IAI47_10275	0.85	+0.8
2,172,071	+		IAI47_10275	0.86	+1.8
2,172,071	+		IAI47_10275	0.86	-0.9
2,172,072	-		IAI47_10275	0.86	+2.9
2,172,072	-		IAI47_10275	0.86	-0.8
2,172,107	+		IAI47_10275	0.88	+1.6
2,172,116	+		IAI47_10275	0.89	+2.4
2,172,117	-		IAI47_10275	0.89	+3.1
2,172,129	+		IAI47_10275	0.90	-0.8
2,172,131	+				-0.3
2,172,132	-				+0.1
2,172,132	-				+1.0
2,172,132	-				+0.3
2,172,132	-				+1.2
2,172,137	+				+2.2
2,172,138	-				+1.2
2,172,138	-				+0.6
2,172,138	-				+0.4
2,172,164	+				+2.1
2,172,164	+				+0.4
2,172,164	+				+3.1
2,172,164	+				+2.0
2,172,165	-				+1.1
2,172,165	-				+1.7
2,172,191	+				+1.7
2,172,192	-				+1.5
2,172,192	-				+0.1
2,172,192	-				+0.1
2,172,193	+				+1.8
2,172,193	+				+1.3
2,172,194	-				+1.6
2,172,219	+				+0.9
2,172,219	+				+0.5
2,172,219	+				-2.8
2,172,220	-				+0.6
2,172,220	-				+0.9
2,172,220	-				-2.3
2,172,220	-				+2.2
2,172,251	+				-1.1
2,172,251	+				+1.1
2,172,252	-				+1.0
2,172,252	-				+0.8
2,172,264	-				-0.9
2,172,264	-				+3.4
2,172,267	+				-0.8
2,172,267	+				+2.2
2,172,268	-				+1.0
2,172,268	-				-0.9
2,172,268	-				+0.9
2,172,268	-				+0.6
2,172,268	-				+0.4
2,172,323	-				+1.2
2,172,323	-				-0.2
2,172,323	-				+0.8
2,172,443	-				+1.2
2,172,586	+		IAI47_10280	0.11	+2.0
2,172,587	-		IAI47_10280	0.11	+0.6
2,172,587	-		IAI47_10280	0.11	-1.3
2,172,656	-		IAI47_10280	0.13	+1.0
2,172,656	-		IAI47_10280	0.13	+1.6
2,172,656	-		IAI47_10280	0.13	+0.2
2,172,656	-		IAI47_10280	0.13	-0.3
2,172,779	+		IAI47_10280	0.17	+0.6
2,172,779	+		IAI47_10280	0.17	+1.1
2,172,779	+		IAI47_10280	0.17	+0.9
2,172,779	+		IAI47_10280	0.17	-1.3
2,172,779	+		IAI47_10280	0.17	+2.1
2,172,779	+		IAI47_10280	0.17	+0.7
2,172,780	-		IAI47_10280	0.17	+3.0
2,172,780	-		IAI47_10280	0.17	+1.2
2,172,780	-		IAI47_10280	0.17	+0.8
2,172,875	-		IAI47_10280	0.20	-0.4
2,172,875	-		IAI47_10280	0.20	+0.1
2,172,899	+		IAI47_10280	0.21	+1.0
2,172,899	+		IAI47_10280	0.21	+0.4
2,172,911	+		IAI47_10280	0.22	+1.2
2,172,912	-		IAI47_10280	0.22	+0.7
2,172,912	-		IAI47_10280	0.22	-0.9
2,172,977	-		IAI47_10280	0.24	+0.1
2,172,977	-		IAI47_10280	0.24	-0.4
2,173,033	+		IAI47_10280	0.26	-0.2
2,173,034	-		IAI47_10280	0.26	+0.7
2,173,034	-		IAI47_10280	0.26	-0.7
2,173,091	+		IAI47_10280	0.28	+1.7
2,173,091	+		IAI47_10280	0.28	+0.9
2,173,091	+		IAI47_10280	0.28	-0.1
2,173,092	-		IAI47_10280	0.28	+1.2
2,173,092	-		IAI47_10280	0.28	-2.2
2,173,092	-		IAI47_10280	0.28	+1.0
2,173,092	-		IAI47_10280	0.28	+1.9
2,173,092	-		IAI47_10280	0.28	+1.2
2,173,092	-		IAI47_10280	0.28	+1.4
2,173,092	-		IAI47_10280	0.28	-0.8
2,173,092	-		IAI47_10280	0.28	+0.8
2,173,092	-		IAI47_10280	0.28	+0.3
2,173,133	+		IAI47_10280	0.29	+1.4
2,173,134	-		IAI47_10280	0.29	+1.2
2,173,134	-		IAI47_10280	0.29	+0.4
2,173,135	+		IAI47_10280	0.29	-0.9
2,173,184	-		IAI47_10280	0.31	-1.1
2,173,184	-		IAI47_10280	0.31	+1.3
2,173,225	+		IAI47_10280	0.32	+1.3
2,173,225	+		IAI47_10280	0.32	+0.6
2,173,225	+		IAI47_10280	0.32	+0.3
2,173,225	+		IAI47_10280	0.32	-0.2
2,173,226	-		IAI47_10280	0.32	+2.9
2,173,226	-		IAI47_10280	0.32	-1.3
2,173,226	-		IAI47_10280	0.32	-1.9
2,173,226	-		IAI47_10280	0.32	+2.0