Strain Fitness in Pantoea sp. MT58 around IAI47_08900

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,879,717	-				+1.1
1,879,717	-				-0.2
1,879,769	-				-0.4
1,879,842	-		IAI47_08900	0.11	+2.1
1,879,876	+		IAI47_08900	0.13	+0.4
1,879,876	+		IAI47_08900	0.13	+1.1
1,879,876	+		IAI47_08900	0.13	-1.0
1,879,876	+		IAI47_08900	0.13	+0.0
1,879,877	-		IAI47_08900	0.14	+0.7
1,879,877	-		IAI47_08900	0.14	+3.2
1,879,932	+		IAI47_08900	0.18	-0.5
1,879,932	+		IAI47_08900	0.18	+1.7
1,879,932	+		IAI47_08900	0.18	+1.0
1,879,933	-		IAI47_08900	0.18	+0.1
1,879,933	-		IAI47_08900	0.18	-2.3
1,879,933	-		IAI47_08900	0.18	-0.6
1,879,950	-		IAI47_08900	0.20	-0.1
1,879,955	-		IAI47_08900	0.20	+1.2
1,879,955	-		IAI47_08900	0.20	+0.6
1,879,955	-		IAI47_08900	0.20	+1.2
1,879,995	+		IAI47_08900	0.23	-1.5
1,879,995	+		IAI47_08900	0.23	+1.5
1,879,995	+		IAI47_08900	0.23	-1.5
1,879,995	+		IAI47_08900	0.23	+1.0
1,879,995	+		IAI47_08900	0.23	+0.5
1,879,995	+		IAI47_08900	0.23	-0.8
1,879,995	+		IAI47_08900	0.23	-1.2
1,879,995	+		IAI47_08900	0.23	+0.0
1,879,995	+		IAI47_08900	0.23	-1.7
1,879,996	-		IAI47_08900	0.24	-0.0
1,879,996	-		IAI47_08900	0.24	+2.3
1,879,996	-		IAI47_08900	0.24	+0.4
1,879,996	-		IAI47_08900	0.24	+3.5
1,879,996	-		IAI47_08900	0.24	-0.6
1,879,996	-		IAI47_08900	0.24	-0.2
1,879,996	-		IAI47_08900	0.24	-0.7
1,879,996	-		IAI47_08900	0.24	-0.5
1,879,996	-		IAI47_08900	0.24	-1.2
1,880,030	+		IAI47_08900	0.26	-0.9
1,880,031	-		IAI47_08900	0.26	+2.5
1,880,051	+		IAI47_08900	0.28	+0.0
1,880,126	-		IAI47_08900	0.34	+1.6
1,880,126	-		IAI47_08900	0.34	-1.6
1,880,126	-		IAI47_08900	0.34	+1.0
1,880,149	+		IAI47_08900	0.36	-0.1
1,880,150	-		IAI47_08900	0.36	-1.7
1,880,150	-		IAI47_08900	0.36	-1.2
1,880,150	-		IAI47_08900	0.36	-0.4
1,880,150	-		IAI47_08900	0.36	+1.1
1,880,216	+		IAI47_08900	0.42	+1.6
1,880,216	+		IAI47_08900	0.42	+1.9
1,880,216	+		IAI47_08900	0.42	+0.3
1,880,217	-		IAI47_08900	0.42	-1.7
1,880,217	-		IAI47_08900	0.42	+0.7
1,880,217	-		IAI47_08900	0.42	-0.5
1,880,217	-		IAI47_08900	0.42	+0.7
1,880,217	-		IAI47_08900	0.42	+1.1
1,880,219	+		IAI47_08900	0.42	-0.3
1,880,219	+		IAI47_08900	0.42	+4.0
1,880,219	+		IAI47_08900	0.42	-1.4
1,880,219	+		IAI47_08900	0.42	+2.0
1,880,219	+		IAI47_08900	0.42	-0.3
1,880,219	+		IAI47_08900	0.42	-1.5
1,880,220	-		IAI47_08900	0.42	+1.8
1,880,220	-		IAI47_08900	0.42	+0.6
1,880,220	-		IAI47_08900	0.42	-0.3
1,880,241	+		IAI47_08900	0.44	+1.5
1,880,241	+		IAI47_08900	0.44	-0.3
1,880,241	+		IAI47_08900	0.44	+1.4
1,880,242	-		IAI47_08900	0.44	-0.4
1,880,242	-		IAI47_08900	0.44	-0.6
1,880,242	-		IAI47_08900	0.44	-0.4
1,880,242	-		IAI47_08900	0.44	+0.9
1,880,320	-		IAI47_08900	0.51	+2.3
1,880,320	-		IAI47_08900	0.51	-0.7
1,880,354	-		IAI47_08900	0.54	-0.4
1,880,354	-		IAI47_08900	0.54	+0.4
1,880,383	+		IAI47_08900	0.56	-1.1
1,880,383	+		IAI47_08900	0.56	-0.4
1,880,383	+		IAI47_08900	0.56	-2.4
1,880,384	-		IAI47_08900	0.56	+1.2
1,880,384	-		IAI47_08900	0.56	+0.8
1,880,399	-		IAI47_08900	0.57	-2.0
1,880,413	-		IAI47_08900	0.58	+0.0
1,880,474	+		IAI47_08900	0.64	-0.1
1,880,523	+		IAI47_08900	0.68	+2.2
1,880,570	-		IAI47_08900	0.72	-0.0
1,880,587	+		IAI47_08900	0.73	+2.1
1,880,587	+		IAI47_08900	0.73	-0.4
1,880,588	-		IAI47_08900	0.73	+2.0
1,880,588	-		IAI47_08900	0.73	+1.0
1,880,660	-		IAI47_08900	0.79	-0.5
1,880,660	-		IAI47_08900	0.79	-0.4
1,880,677	-		IAI47_08900	0.81	-0.7
1,880,677	-		IAI47_08900	0.81	-0.5
1,880,677	-		IAI47_08900	0.81	+0.3
1,880,715	+		IAI47_08900	0.84	+0.9
1,880,715	+		IAI47_08900	0.84	-1.0
1,880,715	+		IAI47_08900	0.84	+0.4
1,880,715	+		IAI47_08900	0.84	+1.3
1,880,715	+		IAI47_08900	0.84	-1.6
1,880,715	+		IAI47_08900	0.84	+0.5
1,880,715	+		IAI47_08900	0.84	+0.9
1,880,716	-		IAI47_08900	0.84	+3.2
1,880,716	-		IAI47_08900	0.84	+2.3
1,880,716	-		IAI47_08900	0.84	+0.1
1,880,806	+				-0.7
1,880,845	-				-0.9
1,880,845	-				+1.8
1,880,882	+				+1.8
1,880,882	+				+0.8
1,880,882	+				+0.9
1,880,882	+				-1.3
1,880,883	-				-1.5
1,880,883	-				-0.3
1,880,885	+				+0.9
1,880,885	+				-1.4
1,880,886	-				-0.9
1,880,886	-				+2.2
1,880,896	+				+0.5
1,880,909	-				-1.0
1,880,977	-				+1.1
1,880,977	-				-0.9
1,881,011	+				-1.2
1,881,011	+				-2.0
1,881,012	-				+0.2
1,881,027	+				+1.0
1,881,028	-				-0.3
1,881,035	+				-1.0
1,881,035	+				+1.8
1,881,035	+				-0.9
1,881,035	+				+2.3
1,881,036	-				+0.8
1,881,036	-				+0.4
1,881,036	-				+1.6
1,881,036	-				-0.1
1,881,038	+				+1.3
1,881,038	+				+2.5
1,881,038	+				+1.9
1,881,039	-				-0.9
1,881,059	-				+1.5
1,881,059	-				-0.3
1,881,059	-				+0.8
1,881,059	-				+2.1
1,881,059	-				-1.4
1,881,059	-				-0.4
1,881,059	-				-1.3
1,881,059	-				-0.4
1,881,059	-				+1.3
1,881,059	-				-1.0
1,881,119	+				+0.0
1,881,119	+				-2.0
1,881,119	+				-1.6
1,881,120	-				-0.4
1,881,120	-				+0.1
1,881,120	-				+1.8
1,881,135	-				+1.5
1,881,135	-				-0.3
1,881,149	+				+1.2
1,881,157	-				-2.1
1,881,162	+				-0.4
1,881,163	-				-0.1
1,881,163	-				+2.0
1,881,212	+		IAI47_08905	0.12	+0.7
1,881,213	-		IAI47_08905	0.12	+1.4
1,881,216	-		IAI47_08905	0.12	-2.0
1,881,216	-		IAI47_08905	0.12	-0.8
1,881,216	-		IAI47_08905	0.12	+1.5
1,881,233	+		IAI47_08905	0.14	-0.1
1,881,304	+		IAI47_08905	0.18	+0.6
1,881,304	+		IAI47_08905	0.18	-0.5
1,881,305	-		IAI47_08905	0.18	+1.0
1,881,313	+		IAI47_08905	0.19	+0.1
1,881,345	+		IAI47_08905	0.21	+2.0
1,881,346	-		IAI47_08905	0.21	+1.3
1,881,346	-		IAI47_08905	0.21	+0.1
1,881,346	-		IAI47_08905	0.21	-0.0
1,881,351	+		IAI47_08905	0.22	-0.5
1,881,352	-		IAI47_08905	0.22	-1.4
1,881,427	+		IAI47_08905	0.27	+0.4
1,881,428	-		IAI47_08905	0.27	+1.6
1,881,521	+		IAI47_08905	0.33	+2.0
1,881,521	+		IAI47_08905	0.33	+0.7
1,881,521	+		IAI47_08905	0.33	-1.3
1,881,522	-		IAI47_08905	0.33	+0.1
1,881,522	-		IAI47_08905	0.33	+0.0
1,881,554	+		IAI47_08905	0.35	+0.2
1,881,554	+		IAI47_08905	0.35	-1.3
1,881,554	+		IAI47_08905	0.35	-0.3
1,881,554	+		IAI47_08905	0.35	+0.9
1,881,554	+		IAI47_08905	0.35	+2.5
1,881,555	-		IAI47_08905	0.36	-1.3
1,881,555	-		IAI47_08905	0.36	-0.7
1,881,555	-		IAI47_08905	0.36	+0.8
1,881,691	-		IAI47_08905	0.45	-1.6
1,881,697	-		IAI47_08905	0.45	+0.1
1,881,697	-		IAI47_08905	0.45	-1.2
1,881,697	-		IAI47_08905	0.45	+2.6
1,881,711	+		IAI47_08905	0.46	-1.2
1,881,716	+		IAI47_08905	0.46	+0.3
1,881,716	+		IAI47_08905	0.46	-0.3
1,881,717	-		IAI47_08905	0.47	-0.4
1,881,717	-		IAI47_08905	0.47	+0.5
1,881,717	-		IAI47_08905	0.47	+0.1
1,881,738	+		IAI47_08905	0.48	-1.1
1,881,739	-		IAI47_08905	0.48	+1.5
1,881,739	-		IAI47_08905	0.48	+0.1
1,881,739	-		IAI47_08905	0.48	-0.3
1,881,815	+		IAI47_08905	0.53	-0.8
1,881,815	+		IAI47_08905	0.53	+1.1
1,881,816	-		IAI47_08905	0.53	+0.2
1,881,816	-		IAI47_08905	0.53	-0.7
1,881,816	-		IAI47_08905	0.53	+0.7
1,881,816	-		IAI47_08905	0.53	+0.7
1,881,816	-		IAI47_08905	0.53	-1.8
1,881,816	-		IAI47_08905	0.53	-0.4
1,881,831	+		IAI47_08905	0.54	+0.9
1,881,832	-		IAI47_08905	0.54	+0.5
1,881,832	-		IAI47_08905	0.54	+1.3
1,881,868	-		IAI47_08905	0.57	-0.2
1,881,868	-		IAI47_08905	0.57	+1.9
1,881,868	-		IAI47_08905	0.57	+1.4