Strain Fitness in Pantoea sp. MT58 around IAI47_04590

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04580 and IAI47_04585 overlap by 8 nucleotidesIAI47_04585 and IAI47_04590 overlap by 11 nucleotidesIAI47_04590 and IAI47_04595 overlap by 4 nucleotides IAI47_04580: IAI47_04580 - ABC transporter ATP-binding protein, at 963,391 to 964,068 _04580 IAI47_04585: IAI47_04585 - ABC transporter ATP-binding protein, at 964,061 to 964,891 _04585 IAI47_04590: IAI47_04590 - ABC transporter permease, at 964,881 to 965,738 _04590 IAI47_04595: IAI47_04595 - ABC transporter permease, at 965,735 to 966,787 _04595 Position (kb) 964 965 966Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 963.996 kb on + strand, within IAI47_04580at 963.997 kb on - strand, within IAI47_04580at 963.997 kb on - strand, within IAI47_04580at 963.997 kb on - strand, within IAI47_04580at 964.025 kb on + strandat 964.026 kb on - strandat 964.026 kb on - strandat 964.026 kb on - strandat 964.057 kb on + strandat 964.057 kb on + strandat 964.057 kb on + strandat 964.058 kb on - strandat 964.058 kb on - strandat 964.069 kb on - strandat 964.069 kb on - strandat 964.103 kb on + strandat 964.104 kb on - strandat 964.104 kb on - strandat 964.158 kb on + strand, within IAI47_04585at 964.158 kb on + strand, within IAI47_04585at 964.158 kb on + strand, within IAI47_04585at 964.158 kb on + strand, within IAI47_04585at 964.158 kb on + strand, within IAI47_04585at 964.158 kb on + strand, within IAI47_04585at 964.158 kb on + strand, within IAI47_04585at 964.159 kb on - strand, within IAI47_04585at 964.159 kb on - strand, within IAI47_04585at 964.159 kb on - strand, within IAI47_04585at 964.159 kb on - strand, within IAI47_04585at 964.159 kb on - strand, within IAI47_04585at 964.198 kb on + strand, within IAI47_04585at 964.218 kb on + strand, within IAI47_04585at 964.218 kb on + strand, within IAI47_04585at 964.219 kb on - strand, within IAI47_04585at 964.219 kb on - strand, within IAI47_04585at 964.219 kb on - strand, within IAI47_04585at 964.219 kb on - strand, within IAI47_04585at 964.219 kb on - strand, within IAI47_04585at 964.219 kb on - strand, within IAI47_04585at 964.219 kb on - strand, within IAI47_04585at 964.219 kb on - strand, within IAI47_04585at 964.219 kb on - strand, within IAI47_04585at 964.219 kb on - strand, within IAI47_04585at 964.291 kb on + strand, within IAI47_04585at 964.291 kb on + strand, within IAI47_04585at 964.291 kb on + strand, within IAI47_04585at 964.291 kb on + strand, within IAI47_04585at 964.291 kb on + strand, within IAI47_04585at 964.594 kb on + strand, within IAI47_04585at 964.594 kb on + strand, within IAI47_04585at 964.595 kb on - strand, within IAI47_04585at 964.595 kb on - strand, within IAI47_04585at 964.602 kb on + strand, within IAI47_04585at 964.602 kb on + strand, within IAI47_04585at 964.603 kb on - strand, within IAI47_04585at 964.603 kb on - strand, within IAI47_04585at 964.603 kb on - strand, within IAI47_04585at 964.603 kb on - strand, within IAI47_04585at 964.603 kb on - strand, within IAI47_04585at 964.603 kb on - strand, within IAI47_04585at 964.603 kb on - strand, within IAI47_04585at 964.603 kb on - strand, within IAI47_04585at 964.882 kb on + strandat 964.883 kb on - strandat 964.934 kb on + strandat 965.093 kb on + strand, within IAI47_04590at 965.154 kb on - strand, within IAI47_04590at 965.154 kb on - strand, within IAI47_04590at 965.165 kb on + strand, within IAI47_04590at 965.166 kb on - strand, within IAI47_04590at 965.166 kb on - strand, within IAI47_04590at 965.166 kb on - strand, within IAI47_04590at 965.166 kb on - strand, within IAI47_04590at 965.180 kb on + strand, within IAI47_04590at 965.180 kb on + strand, within IAI47_04590at 965.180 kb on + strand, within IAI47_04590at 965.210 kb on - strand, within IAI47_04590at 965.469 kb on + strand, within IAI47_04590at 965.470 kb on - strand, within IAI47_04590at 965.707 kb on - strandat 965.765 kb on + strandat 965.765 kb on + strandat 965.785 kb on + strandat 965.786 kb on - strandat 965.866 kb on + strand, within IAI47_04595at 965.866 kb on + strand, within IAI47_04595at 965.867 kb on - strand, within IAI47_04595at 965.867 kb on - strand, within IAI47_04595at 965.867 kb on - strand, within IAI47_04595at 965.867 kb on - strand, within IAI47_04595at 965.867 kb on - strand, within IAI47_04595at 965.867 kb on - strand, within IAI47_04595at 965.867 kb on - strand, within IAI47_04595at 965.867 kb on - strand, within IAI47_04595at 965.868 kb on + strand, within IAI47_04595at 965.868 kb on + strand, within IAI47_04595at 965.868 kb on + strand, within IAI47_04595at 965.868 kb on + strand, within IAI47_04595at 965.868 kb on + strand, within IAI47_04595at 965.868 kb on + strand, within IAI47_04595at 965.868 kb on + strand, within IAI47_04595at 965.868 kb on + strand, within IAI47_04595at 965.868 kb on + strand, within IAI47_04595at 965.868 kb on + strand, within IAI47_04595at 965.869 kb on - strand, within IAI47_04595at 965.869 kb on - strand, within IAI47_04595at 965.869 kb on - strand, within IAI47_04595at 965.934 kb on + strand, within IAI47_04595at 965.981 kb on + strand, within IAI47_04595at 965.981 kb on + strand, within IAI47_04595at 965.981 kb on + strand, within IAI47_04595at 965.981 kb on + strand, within IAI47_04595at 965.981 kb on + strand, within IAI47_04595at 965.981 kb on + strand, within IAI47_04595at 965.981 kb on + strand, within IAI47_04595at 965.981 kb on + strand, within IAI47_04595at 965.981 kb on + strand, within IAI47_04595at 965.981 kb on + strand, within IAI47_04595at 965.981 kb on + strand, within IAI47_04595at 965.981 kb on + strand, within IAI47_04595at 965.982 kb on - strand, within IAI47_04595at 965.982 kb on - strand, within IAI47_04595at 965.982 kb on - strand, within IAI47_04595at 965.982 kb on - strand, within IAI47_04595at 965.982 kb on - strand, within IAI47_04595at 965.982 kb on - strand, within IAI47_04595at 965.982 kb on - strand, within IAI47_04595at 965.983 kb on + strand, within IAI47_04595at 965.983 kb on + strand, within IAI47_04595at 965.983 kb on + strand, within IAI47_04595at 965.983 kb on + strand, within IAI47_04595at 965.983 kb on + strand, within IAI47_04595at 965.984 kb on - strand, within IAI47_04595at 965.984 kb on - strand, within IAI47_04595at 965.984 kb on - strand, within IAI47_04595at 965.984 kb on - strand, within IAI47_04595at 965.984 kb on - strand, within IAI47_04595at 965.984 kb on - strand, within IAI47_04595at 966.039 kb on + strand, within IAI47_04595at 966.039 kb on + strand, within IAI47_04595at 966.039 kb on + strand, within IAI47_04595at 966.039 kb on + strand, within IAI47_04595at 966.039 kb on + strand, within IAI47_04595at 966.039 kb on + strand, within IAI47_04595at 966.039 kb on + strand, within IAI47_04595at 966.040 kb on - strand, within IAI47_04595at 966.040 kb on - strand, within IAI47_04595at 966.040 kb on - strand, within IAI47_04595at 966.040 kb on - strand, within IAI47_04595at 966.040 kb on - strand, within IAI47_04595at 966.040 kb on - strand, within IAI47_04595at 966.040 kb on - strand, within IAI47_04595at 966.040 kb on - strand, within IAI47_04595at 966.040 kb on - strand, within IAI47_04595at 966.040 kb on - strand, within IAI47_04595at 966.047 kb on - strand, within IAI47_04595at 966.047 kb on - strand, within IAI47_04595at 966.047 kb on - strand, within IAI47_04595at 966.047 kb on - strand, within IAI47_04595at 966.217 kb on + strand, within IAI47_04595at 966.217 kb on + strand, within IAI47_04595at 966.219 kb on + strand, within IAI47_04595at 966.219 kb on + strand, within IAI47_04595at 966.219 kb on + strand, within IAI47_04595at 966.219 kb on + strand, within IAI47_04595at 966.220 kb on - strand, within IAI47_04595at 966.220 kb on - strand, within IAI47_04595at 966.220 kb on - strand, within IAI47_04595at 966.220 kb on - strand, within IAI47_04595at 966.229 kb on + strand, within IAI47_04595at 966.229 kb on + strand, within IAI47_04595at 966.229 kb on + strand, within IAI47_04595at 966.230 kb on - strand, within IAI47_04595at 966.230 kb on - strand, within IAI47_04595at 966.230 kb on - strandat 966.230 kb on - strand, within IAI47_04595at 966.273 kb on + strand, within IAI47_04595at 966.273 kb on + strand, within IAI47_04595at 966.274 kb on - strand, within IAI47_04595at 966.274 kb on - strand, within IAI47_04595at 966.274 kb on - strand, within IAI47_04595at 966.337 kb on + strand, within IAI47_04595at 966.337 kb on + strand, within IAI47_04595at 966.338 kb on - strand, within IAI47_04595at 966.338 kb on - strand, within IAI47_04595at 966.353 kb on - strand, within IAI47_04595at 966.408 kb on - strand, within IAI47_04595at 966.408 kb on - strand, within IAI47_04595at 966.537 kb on + strand, within IAI47_04595at 966.537 kb on + strand, within IAI47_04595at 966.538 kb on - strand, within IAI47_04595at 966.538 kb on - strand, within IAI47_04595at 966.597 kb on + strand, within IAI47_04595at 966.598 kb on - strand, within IAI47_04595at 966.667 kb on + strand, within IAI47_04595at 966.668 kb on - strand, within IAI47_04595at 966.668 kb on - strand, within IAI47_04595at 966.668 kb on - strand, within IAI47_04595at 966.668 kb on - strand, within IAI47_04595at 966.668 kb on - strand, within IAI47_04595at 966.668 kb on - strand, within IAI47_04595at 966.668 kb on - strand, within IAI47_04595at 966.713 kb on + strandat 966.713 kb on + strandat 966.713 kb on + strandat 966.713 kb on + strandat 966.714 kb on - strandat 966.714 kb on - strandat 966.714 kb on - strandat 966.714 kb on - strandat 966.714 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
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963,996 + IAI47_04580 0.89 -2.0
963,997 - IAI47_04580 0.89 +0.1
963,997 - IAI47_04580 0.89 -2.2
963,997 - IAI47_04580 0.89 +0.2
964,025 + +0.7
964,026 - +1.5
964,026 - -1.6
964,026 - +0.9
964,057 + -2.6
964,057 + +0.9
964,057 + +0.7
964,058 - +0.9
964,058 - +2.5
964,069 - +0.6
964,069 - +1.4
964,103 + +2.2
964,104 - -1.2
964,104 - -0.5
964,158 + IAI47_04585 0.12 +0.2
964,158 + IAI47_04585 0.12 +0.2
964,158 + IAI47_04585 0.12 -2.4
964,158 + IAI47_04585 0.12 -2.5
964,158 + IAI47_04585 0.12 +0.9
964,158 + IAI47_04585 0.12 -0.1
964,158 + IAI47_04585 0.12 -0.5
964,159 - IAI47_04585 0.12 +0.0
964,159 - IAI47_04585 0.12 +0.2
964,159 - IAI47_04585 0.12 -0.4
964,159 - IAI47_04585 0.12 +1.4
964,159 - IAI47_04585 0.12 -3.0
964,198 + IAI47_04585 0.16 -0.3
964,218 + IAI47_04585 0.19 +1.6
964,218 + IAI47_04585 0.19 -0.0
964,219 - IAI47_04585 0.19 +3.1
964,219 - IAI47_04585 0.19 -0.4
964,219 - IAI47_04585 0.19 +1.3
964,219 - IAI47_04585 0.19 +0.3
964,219 - IAI47_04585 0.19 +0.3
964,219 - IAI47_04585 0.19 +1.1
964,219 - IAI47_04585 0.19 -2.6
964,219 - IAI47_04585 0.19 -0.9
964,219 - IAI47_04585 0.19 -1.9
964,219 - IAI47_04585 0.19 +2.2
964,291 + IAI47_04585 0.28 -0.7
964,291 + IAI47_04585 0.28 +0.1
964,291 + IAI47_04585 0.28 -2.2
964,291 + IAI47_04585 0.28 +0.4
964,291 + IAI47_04585 0.28 +0.1
964,594 + IAI47_04585 0.64 -0.5
964,594 + IAI47_04585 0.64 +0.5
964,595 - IAI47_04585 0.64 +1.2
964,595 - IAI47_04585 0.64 +0.2
964,602 + IAI47_04585 0.65 +0.6
964,602 + IAI47_04585 0.65 -0.7
964,603 - IAI47_04585 0.65 +0.4
964,603 - IAI47_04585 0.65 +0.2
964,603 - IAI47_04585 0.65 +1.3
964,603 - IAI47_04585 0.65 -0.1
964,603 - IAI47_04585 0.65 +1.5
964,603 - IAI47_04585 0.65 +1.1
964,603 - IAI47_04585 0.65 +2.0
964,603 - IAI47_04585 0.65 -0.0
964,882 + -2.1
964,883 - -0.1
964,934 + +1.0
965,093 + IAI47_04590 0.25 +1.7
965,154 - IAI47_04590 0.32 -0.7
965,154 - IAI47_04590 0.32 -0.0
965,165 + IAI47_04590 0.33 +0.4
965,166 - IAI47_04590 0.33 -2.5
965,166 - IAI47_04590 0.33 -3.2
965,166 - IAI47_04590 0.33 +0.7
965,166 - IAI47_04590 0.33 -2.2
965,180 + IAI47_04590 0.35 -1.7
965,180 + IAI47_04590 0.35 -3.0
965,180 + IAI47_04590 0.35 +0.2
965,210 - IAI47_04590 0.38 -0.3
965,469 + IAI47_04590 0.69 -0.3
965,470 - IAI47_04590 0.69 +0.4
965,707 - -0.2
965,765 + -0.2
965,765 + +1.2
965,785 + -1.1
965,786 - +1.3
965,866 + IAI47_04595 0.12 +0.1
965,866 + IAI47_04595 0.12 +0.5
965,867 - IAI47_04595 0.13 -1.8
965,867 - IAI47_04595 0.13 +1.2
965,867 - IAI47_04595 0.13 +1.8
965,867 - IAI47_04595 0.13 +1.5
965,867 - IAI47_04595 0.13 +2.0
965,867 - IAI47_04595 0.13 +1.2
965,867 - IAI47_04595 0.13 -1.9
965,867 - IAI47_04595 0.13 -0.6
965,868 + IAI47_04595 0.13 -1.3
965,868 + IAI47_04595 0.13 +1.4
965,868 + IAI47_04595 0.13 -0.1
965,868 + IAI47_04595 0.13 +1.0
965,868 + IAI47_04595 0.13 -1.6
965,868 + IAI47_04595 0.13 +2.0
965,868 + IAI47_04595 0.13 +0.4
965,868 + IAI47_04595 0.13 +0.5
965,868 + IAI47_04595 0.13 -0.9
965,868 + IAI47_04595 0.13 +1.1
965,869 - IAI47_04595 0.13 -0.8
965,869 - IAI47_04595 0.13 +1.3
965,869 - IAI47_04595 0.13 +0.2
965,934 + IAI47_04595 0.19 +1.1
965,981 + IAI47_04595 0.23 -0.4
965,981 + IAI47_04595 0.23 +0.0
965,981 + IAI47_04595 0.23 +1.2
965,981 + IAI47_04595 0.23 +1.7
965,981 + IAI47_04595 0.23 -0.7
965,981 + IAI47_04595 0.23 -0.2
965,981 + IAI47_04595 0.23 -0.8
965,981 + IAI47_04595 0.23 +1.0
965,981 + IAI47_04595 0.23 -1.2
965,981 + IAI47_04595 0.23 +0.1
965,981 + IAI47_04595 0.23 -0.0
965,981 + IAI47_04595 0.23 +2.8
965,982 - IAI47_04595 0.23 -1.4
965,982 - IAI47_04595 0.23 +1.5
965,982 - IAI47_04595 0.23 +0.4
965,982 - IAI47_04595 0.23 -1.1
965,982 - IAI47_04595 0.23 +1.2
965,982 - IAI47_04595 0.23 -1.7
965,982 - IAI47_04595 0.23 +2.9
965,983 + IAI47_04595 0.24 -1.3
965,983 + IAI47_04595 0.24 -0.3
965,983 + IAI47_04595 0.24 -1.0
965,983 + IAI47_04595 0.24 -1.3
965,983 + IAI47_04595 0.24 -0.3
965,984 - IAI47_04595 0.24 +0.8
965,984 - IAI47_04595 0.24 +0.2
965,984 - IAI47_04595 0.24 +0.4
965,984 - IAI47_04595 0.24 -0.7
965,984 - IAI47_04595 0.24 +0.3
965,984 - IAI47_04595 0.24 +0.7
966,039 + IAI47_04595 0.29 +0.4
966,039 + IAI47_04595 0.29 +1.4
966,039 + IAI47_04595 0.29 -1.5
966,039 + IAI47_04595 0.29 +0.7
966,039 + IAI47_04595 0.29 +1.0
966,039 + IAI47_04595 0.29 +0.2
966,039 + IAI47_04595 0.29 +1.2
966,040 - IAI47_04595 0.29 +0.3
966,040 - IAI47_04595 0.29 -0.9
966,040 - IAI47_04595 0.29 +0.7
966,040 - IAI47_04595 0.29 +1.3
966,040 - IAI47_04595 0.29 +1.2
966,040 - IAI47_04595 0.29 -0.1
966,040 - IAI47_04595 0.29 -0.5
966,040 - IAI47_04595 0.29 -1.3
966,040 - IAI47_04595 0.29 -2.6
966,040 - IAI47_04595 0.29 -1.1
966,047 - IAI47_04595 0.30 +0.6
966,047 - IAI47_04595 0.30 -0.4
966,047 - IAI47_04595 0.30 -0.7
966,047 - IAI47_04595 0.30 +2.0
966,217 + IAI47_04595 0.46 -0.5
966,217 + IAI47_04595 0.46 +0.5
966,219 + IAI47_04595 0.46 -0.9
966,219 + IAI47_04595 0.46 -0.9
966,219 + IAI47_04595 0.46 +0.8
966,219 + IAI47_04595 0.46 +1.5
966,220 - IAI47_04595 0.46 +0.8
966,220 - IAI47_04595 0.46 -0.8
966,220 - IAI47_04595 0.46 -1.8
966,220 - IAI47_04595 0.46 +0.9
966,229 + IAI47_04595 0.47 +0.5
966,229 + IAI47_04595 0.47 +0.8
966,229 + IAI47_04595 0.47 -1.7
966,230 - IAI47_04595 0.47 -2.9
966,230 - IAI47_04595 0.47 -2.7
966,230 - -0.2
966,230 - IAI47_04595 0.47 +0.3
966,273 + IAI47_04595 0.51 -0.7
966,273 + IAI47_04595 0.51 -1.2
966,274 - IAI47_04595 0.51 +3.2
966,274 - IAI47_04595 0.51 -0.1
966,274 - IAI47_04595 0.51 +1.3
966,337 + IAI47_04595 0.57 +2.7
966,337 + IAI47_04595 0.57 -2.1
966,338 - IAI47_04595 0.57 -2.0
966,338 - IAI47_04595 0.57 -1.2
966,353 - IAI47_04595 0.59 -0.8
966,408 - IAI47_04595 0.64 +1.0
966,408 - IAI47_04595 0.64 +0.7
966,537 + IAI47_04595 0.76 -1.6
966,537 + IAI47_04595 0.76 -0.8
966,538 - IAI47_04595 0.76 +1.7
966,538 - IAI47_04595 0.76 +0.7
966,597 + IAI47_04595 0.82 +2.6
966,598 - IAI47_04595 0.82 -1.8
966,667 + IAI47_04595 0.89 -0.2
966,668 - IAI47_04595 0.89 +0.4
966,668 - IAI47_04595 0.89 +1.7
966,668 - IAI47_04595 0.89 -2.2
966,668 - IAI47_04595 0.89 +1.6
966,668 - IAI47_04595 0.89 +2.8
966,668 - IAI47_04595 0.89 -1.0
966,668 - IAI47_04595 0.89 +0.5
966,713 + -0.2
966,713 + -0.1
966,713 + +0.1
966,713 + -0.4
966,714 - +1.9
966,714 - -2.4
966,714 - -0.9
966,714 - -1.2
966,714 - -1.9

Or see this region's nucleotide sequence