Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02145 and IAI47_02150 are separated by 12 nucleotides IAI47_02150 and IAI47_02155 overlap by 1 nucleotides IAI47_02155 and IAI47_02160 overlap by 1 nucleotides IAI47_02160 and IAI47_02165 are separated by 388 nucleotides
IAI47_02145: IAI47_02145 - 30S ribosomal protein S3, at 457,559 to 458,257
_02145
IAI47_02150: IAI47_02150 - 50S ribosomal protein L16, at 458,270 to 458,680
_02150
IAI47_02155: IAI47_02155 - 50S ribosomal protein L29, at 458,680 to 458,871
_02155
IAI47_02160: IAI47_02160 - 30S ribosomal protein S17, at 458,871 to 459,125
_02160
IAI47_02165: IAI47_02165 - 8-oxoguanine deaminase, at 459,514 to 460,866
_02165
Position (kb) 458
459 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 459.184 kb on + strand at 459.215 kb on + strand at 459.216 kb on + strand at 459.216 kb on + strand at 459.216 kb on + strand at 459.216 kb on + strand at 459.216 kb on + strand at 459.216 kb on + strand at 459.216 kb on + strand at 459.216 kb on + strand at 459.217 kb on - strand at 459.217 kb on - strand at 459.217 kb on - strand at 459.315 kb on + strand at 459.316 kb on - strand at 459.316 kb on - strand at 459.406 kb on + strand at 459.406 kb on + strand at 459.407 kb on - strand at 459.407 kb on - strand at 459.407 kb on - strand at 459.407 kb on - strand at 459.443 kb on + strand at 459.443 kb on + strand at 459.443 kb on + strand at 459.443 kb on + strand at 459.443 kb on + strand at 459.443 kb on + strand at 459.443 kb on + strand at 459.444 kb on - strand at 459.444 kb on - strand at 459.444 kb on - strand at 459.444 kb on - strand at 459.469 kb on + strand at 459.470 kb on - strand at 459.473 kb on - strand at 459.486 kb on + strand at 459.486 kb on + strand at 459.486 kb on + strand at 459.486 kb on + strand at 459.487 kb on - strand at 459.514 kb on - strand at 459.531 kb on - strand at 459.547 kb on + strand at 459.547 kb on + strand at 459.547 kb on + strand at 459.547 kb on + strand at 459.548 kb on - strand at 459.548 kb on - strand at 459.548 kb on - strand at 459.581 kb on + strand at 459.581 kb on + strand at 459.581 kb on + strand at 459.582 kb on - strand at 459.582 kb on - strand at 459.595 kb on - strand at 459.602 kb on + strand at 459.603 kb on - strand at 459.603 kb on - strand at 459.644 kb on + strand at 459.644 kb on + strand at 459.644 kb on + strand at 459.644 kb on + strand at 459.645 kb on - strand at 459.645 kb on - strand at 459.645 kb on - strand at 459.645 kb on - strand at 459.645 kb on - strand at 459.645 kb on - strand at 459.651 kb on + strand, within IAI47_02165 at 459.690 kb on + strand, within IAI47_02165 at 459.690 kb on + strand, within IAI47_02165 at 459.691 kb on - strand, within IAI47_02165 at 459.708 kb on + strand, within IAI47_02165 at 459.708 kb on + strand, within IAI47_02165 at 459.709 kb on - strand, within IAI47_02165 at 459.709 kb on - strand, within IAI47_02165 at 459.720 kb on + strand, within IAI47_02165 at 459.720 kb on + strand, within IAI47_02165 at 459.720 kb on + strand, within IAI47_02165 at 459.720 kb on + strand, within IAI47_02165 at 459.720 kb on + strand, within IAI47_02165 at 459.720 kb on + strand, within IAI47_02165 at 459.720 kb on + strand, within IAI47_02165 at 459.720 kb on + strand, within IAI47_02165 at 459.720 kb on + strand, within IAI47_02165 at 459.720 kb on + strand, within IAI47_02165 at 459.720 kb on + strand, within IAI47_02165 at 459.720 kb on + strand, within IAI47_02165 at 459.721 kb on - strand, within IAI47_02165 at 459.721 kb on - strand, within IAI47_02165 at 459.721 kb on - strand, within IAI47_02165 at 459.721 kb on - strand, within IAI47_02165 at 459.721 kb on - strand, within IAI47_02165 at 459.721 kb on - strand, within IAI47_02165 at 459.721 kb on - strand, within IAI47_02165 at 459.721 kb on - strand, within IAI47_02165 at 459.721 kb on - strand, within IAI47_02165 at 459.721 kb on - strand, within IAI47_02165 at 459.721 kb on - strand, within IAI47_02165 at 459.724 kb on + strand, within IAI47_02165 at 459.724 kb on + strand, within IAI47_02165 at 459.724 kb on + strand, within IAI47_02165 at 459.724 kb on + strand, within IAI47_02165 at 459.725 kb on - strand, within IAI47_02165 at 459.725 kb on - strand, within IAI47_02165 at 459.725 kb on - strand, within IAI47_02165 at 459.725 kb on - strand, within IAI47_02165 at 459.725 kb on - strand, within IAI47_02165 at 459.725 kb on - strand, within IAI47_02165 at 459.725 kb on - strand, within IAI47_02165 at 459.725 kb on - strand, within IAI47_02165 at 459.725 kb on - strand, within IAI47_02165 at 459.745 kb on - strand, within IAI47_02165 at 459.794 kb on - strand, within IAI47_02165 at 459.813 kb on - strand, within IAI47_02165
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 459,184 + +2.0 459,215 + -2.3 459,216 + +1.4 459,216 + -1.6 459,216 + +0.8 459,216 + +0.1 459,216 + +0.5 459,216 + +1.4 459,216 + -0.4 459,216 + +1.1 459,217 - -0.0 459,217 - -0.8 459,217 - +0.5 459,315 + +0.5 459,316 - +1.3 459,316 - -1.4 459,406 + -2.3 459,406 + +0.2 459,407 - -0.3 459,407 - -1.0 459,407 - +0.1 459,407 - +0.8 459,443 + +1.0 459,443 + +0.2 459,443 + -0.7 459,443 + -2.2 459,443 + -1.6 459,443 + -0.5 459,443 + -0.4 459,444 - -1.3 459,444 - -1.3 459,444 - -1.9 459,444 - -1.8 459,469 + +1.0 459,470 - +0.1 459,473 - +0.1 459,486 + -0.6 459,486 + +3.0 459,486 + -0.7 459,486 + +1.2 459,487 - +0.7 459,514 - +2.3 459,531 - +0.7 459,547 + -1.0 459,547 + -0.3 459,547 + +2.0 459,547 + +0.5 459,548 - +1.0 459,548 - +0.4 459,548 - +0.3 459,581 + +0.9 459,581 + +1.7 459,581 + -0.2 459,582 - -1.9 459,582 - -0.3 459,595 - -0.4 459,602 + -1.6 459,603 - +0.3 459,603 - -0.4 459,644 + -2.1 459,644 + -0.6 459,644 + +1.9 459,644 + +0.7 459,645 - +1.5 459,645 - +0.6 459,645 - -1.1 459,645 - -0.8 459,645 - +1.5 459,645 - +0.6 459,651 + IAI47_02165 0.10 -1.1 459,690 + IAI47_02165 0.13 +0.4 459,690 + IAI47_02165 0.13 +0.7 459,691 - IAI47_02165 0.13 +0.6 459,708 + IAI47_02165 0.14 +2.1 459,708 + IAI47_02165 0.14 +0.5 459,709 - IAI47_02165 0.14 -0.6 459,709 - IAI47_02165 0.14 +0.1 459,720 + IAI47_02165 0.15 +0.3 459,720 + IAI47_02165 0.15 +0.9 459,720 + IAI47_02165 0.15 -0.7 459,720 + IAI47_02165 0.15 -0.3 459,720 + IAI47_02165 0.15 +0.1 459,720 + IAI47_02165 0.15 +1.6 459,720 + IAI47_02165 0.15 -0.9 459,720 + IAI47_02165 0.15 +2.4 459,720 + IAI47_02165 0.15 +0.4 459,720 + IAI47_02165 0.15 -0.3 459,720 + IAI47_02165 0.15 -0.1 459,720 + IAI47_02165 0.15 +1.2 459,721 - IAI47_02165 0.15 +3.9 459,721 - IAI47_02165 0.15 +0.1 459,721 - IAI47_02165 0.15 -1.1 459,721 - IAI47_02165 0.15 -1.2 459,721 - IAI47_02165 0.15 +1.3 459,721 - IAI47_02165 0.15 -1.9 459,721 - IAI47_02165 0.15 +0.0 459,721 - IAI47_02165 0.15 -1.2 459,721 - IAI47_02165 0.15 -0.1 459,721 - IAI47_02165 0.15 +2.7 459,721 - IAI47_02165 0.15 -0.0 459,724 + IAI47_02165 0.16 -2.8 459,724 + IAI47_02165 0.16 -0.2 459,724 + IAI47_02165 0.16 -0.8 459,724 + IAI47_02165 0.16 -3.2 459,725 - IAI47_02165 0.16 -1.9 459,725 - IAI47_02165 0.16 +1.2 459,725 - IAI47_02165 0.16 +2.0 459,725 - IAI47_02165 0.16 -0.7 459,725 - IAI47_02165 0.16 +1.1 459,725 - IAI47_02165 0.16 +1.3 459,725 - IAI47_02165 0.16 -0.4 459,725 - IAI47_02165 0.16 -0.1 459,725 - IAI47_02165 0.16 +0.4 459,745 - IAI47_02165 0.17 +0.0 459,794 - IAI47_02165 0.21 -0.8 459,813 - IAI47_02165 0.22 +0.9
Or see this region's nucleotide sequence