Strain Fitness in Pantoea sp. MT58 around IAI47_14070

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,971,749	+		IAI47_14065	0.44	-1.2
2,971,749	+		IAI47_14065	0.44	+1.5
2,971,749	+		IAI47_14065	0.44	+0.5
2,971,749	+		IAI47_14065	0.44	+0.3
2,971,749	+		IAI47_14065	0.44	-2.1
2,971,749	+		IAI47_14065	0.44	-1.7
2,971,749	+		IAI47_14065	0.44	+0.7
2,971,749	+		IAI47_14065	0.44	+1.2
2,971,749	+		IAI47_14065	0.44	-0.9
2,971,749	+		IAI47_14065	0.44	+0.4
2,971,749	+		IAI47_14065	0.44	+1.0
2,971,750	-		IAI47_14065	0.44	-1.7
2,971,750	-		IAI47_14065	0.44	-1.0
2,971,750	-		IAI47_14065	0.44	-0.1
2,971,750	-		IAI47_14065	0.44	-0.1
2,971,750	-		IAI47_14065	0.44	+0.9
2,971,750	-		IAI47_14065	0.44	-1.5
2,971,750	-		IAI47_14065	0.44	+0.3
2,971,750	-		IAI47_14065	0.44	+1.7
2,971,750	-		IAI47_14065	0.44	-2.1
2,971,750	-		IAI47_14065	0.44	+1.3
2,971,760	+		IAI47_14065	0.45	-0.7
2,971,774	+		IAI47_14065	0.47	-1.7
2,971,774	+		IAI47_14065	0.47	+2.4
2,971,851	+		IAI47_14065	0.57	-1.0
2,971,851	+		IAI47_14065	0.57	+0.0
2,971,852	-		IAI47_14065	0.57	-0.4
2,971,852	-		IAI47_14065	0.57	-1.7
2,971,852	-		IAI47_14065	0.57	+0.7
2,971,869	+		IAI47_14065	0.59	-0.1
2,971,869	+		IAI47_14065	0.59	+1.2
2,971,869	+		IAI47_14065	0.59	-0.3
2,971,869	+		IAI47_14065	0.59	-1.9
2,971,870	-		IAI47_14065	0.59	+1.6
2,971,870	-		IAI47_14065	0.59	-0.0
2,971,879	+		IAI47_14065	0.60	+0.1
2,971,879	+		IAI47_14065	0.60	+1.6
2,971,879	+		IAI47_14065	0.60	-1.2
2,971,907	+		IAI47_14065	0.64	-1.7
2,971,907	+		IAI47_14065	0.64	+0.1
2,971,908	-		IAI47_14065	0.64	+1.9
2,971,908	-		IAI47_14065	0.64	+0.6
2,971,908	-		IAI47_14065	0.64	+0.6
2,971,921	+		IAI47_14065	0.66	+1.6
2,971,921	+		IAI47_14065	0.66	-0.7
2,971,921	+		IAI47_14065	0.66	-0.8
2,971,921	+		IAI47_14065	0.66	-0.8
2,971,921	+		IAI47_14065	0.66	+1.0
2,971,922	-		IAI47_14065	0.66	+0.7
2,971,952	+		IAI47_14065	0.70	-0.4
2,971,952	+		IAI47_14065	0.70	+1.2
2,971,952	+		IAI47_14065	0.70	+0.6
2,971,952	+		IAI47_14065	0.70	+0.3
2,971,953	-		IAI47_14065	0.70	-0.4
2,971,953	-		IAI47_14065	0.70	+0.2
2,971,954	+		IAI47_14065	0.70	+0.7
2,971,954	+		IAI47_14065	0.70	-0.7
2,971,954	+		IAI47_14065	0.70	+2.6
2,971,954	+		IAI47_14065	0.70	-1.0
2,971,969	+		IAI47_14065	0.72	+0.3
2,971,970	-		IAI47_14065	0.72	-0.1
2,971,970	-		IAI47_14065	0.72	-0.4
2,971,970	-		IAI47_14065	0.72	-2.2
2,971,999	+		IAI47_14065	0.76	+1.4
2,971,999	+		IAI47_14065	0.76	-0.1
2,971,999	+		IAI47_14065	0.76	-0.1
2,972,000	-		IAI47_14065	0.76	-0.6
2,972,000	-		IAI47_14065	0.76	+1.1
2,972,000	-		IAI47_14065	0.76	+0.6
2,972,050	+		IAI47_14065	0.82	-0.8
2,972,051	-		IAI47_14065	0.82	+1.4
2,972,051	-		IAI47_14065	0.82	-0.1
2,972,051	-		IAI47_14065	0.82	+0.8
2,972,053	+		IAI47_14065	0.82	-0.6
2,972,054	-		IAI47_14065	0.83	-2.4
2,972,054	-		IAI47_14065	0.83	-1.1
2,972,134	+				+0.0
2,972,134	+				-0.0
2,972,134	+				+0.0
2,972,134	+				-2.7
2,972,134	+				+1.6
2,972,135	-				+0.2
2,972,135	-				-0.9
2,972,135	-				-2.7
2,972,135	-				-1.1
2,972,250	+				+0.4
2,972,250	+				+0.4
2,972,251	-				-0.2
2,972,251	-				+0.9
2,972,251	-				-1.0
2,972,306	+				+0.2
2,972,329	-				+0.4
2,972,355	-				+0.6
2,972,355	-				+2.1
2,972,387	-				-0.7
2,972,387	-				+0.3
2,972,387	-				-1.4
2,972,387	-				-1.0
2,972,389	-				-0.0
2,972,389	-				+1.1
2,972,389	-				+0.7
2,972,396	+				+0.5
2,972,396	+				+0.5
2,972,396	+				+1.0
2,972,403	+				+2.0
2,972,411	-				-0.2
2,972,426	+				+1.1
2,972,427	-				+2.0
2,972,427	-				-0.3
2,972,429	+				+2.0
2,972,429	+				-0.3
2,972,430	-				+1.1
2,972,436	-				+0.6
2,972,479	+				+0.3
2,972,479	+				-0.4
2,972,480	-				-1.1
2,972,480	-				-0.3
2,972,508	+				-2.4
2,972,509	-				+0.5
2,972,540	+				-1.0
2,972,540	+				+0.6
2,972,540	+				-0.4
2,972,540	+				+0.4
2,972,541	-				-0.4
2,972,541	-				+1.4
2,972,541	-				+0.1
2,972,541	-				+1.9
2,972,560	+				+3.9
2,972,560	+				+1.5
2,972,560	+				+0.9
2,972,560	+				+1.8
2,972,561	-				-0.8
2,972,561	-				+1.6
2,972,561	-				-0.7
2,972,561	-				+0.5
2,972,599	+				+4.4
2,972,600	-				-0.6
2,972,613	+				-1.5
2,972,613	+				-1.0
2,972,613	+				-1.1
2,972,613	+				+1.6
2,972,613	+				-1.0
2,972,614	-				-1.6
2,972,614	-				-0.0
2,972,680	-				-1.5
2,972,680	-				-2.6
2,972,680	-				-0.1
2,972,712	-				-1.1
2,972,719	+				-2.4
2,972,719	+				-0.1
2,972,720	-				-2.6
2,972,720	-				-1.9
2,972,720	-				+1.1
2,972,720	-				+0.5
2,972,737	+		IAI47_14070	0.11	+1.0
2,972,737	+		IAI47_14070	0.11	+1.5
2,972,737	+		IAI47_14070	0.11	+0.9
2,972,737	+		IAI47_14070	0.11	+1.6
2,972,737	+		IAI47_14070	0.11	-2.4
2,972,738	-		IAI47_14070	0.11	-1.1
2,972,752	+		IAI47_14070	0.14	-2.1
2,972,798	+		IAI47_14070	0.25	-0.1
2,972,798	+		IAI47_14070	0.25	+1.0
2,972,798	+		IAI47_14070	0.25	-1.0
2,972,799	-		IAI47_14070	0.25	+3.0
2,972,799	-		IAI47_14070	0.25	+1.6
2,972,799	-		IAI47_14070	0.25	+1.5
2,972,837	-		IAI47_14070	0.34	+0.6
2,972,837	-		IAI47_14070	0.34	-0.7
2,972,893	+		IAI47_14070	0.47	-0.7
2,972,893	+		IAI47_14070	0.47	-2.0
2,972,894	-		IAI47_14070	0.47	+0.3
2,972,894	-		IAI47_14070	0.47	-2.0
2,972,985	+		IAI47_14070	0.68	-0.3
2,972,986	-		IAI47_14070	0.68	-0.2
2,973,012	+		IAI47_14070	0.74	+1.5
2,973,012	+		IAI47_14070	0.74	-3.1
2,973,013	-		IAI47_14070	0.75	+0.8
2,973,056	-		IAI47_14070	0.84	+0.4
2,973,060	+		IAI47_14070	0.85	+1.0
2,973,061	-		IAI47_14070	0.86	+0.7
2,973,061	-		IAI47_14070	0.86	-1.8
2,973,061	-		IAI47_14070	0.86	+1.3
2,973,061	-		IAI47_14070	0.86	+1.9
2,973,114	+				+1.1
2,973,114	+				-0.2
2,973,114	+				-0.6
2,973,114	+				+0.8
2,973,114	+				-1.6
2,973,114	+				-0.1
2,973,115	-				+0.5
2,973,149	+				-0.7
2,973,149	+				-1.0
2,973,150	-				-2.5
2,973,150	-				+2.8
2,973,158	+				+0.8
2,973,158	+				-1.4
2,973,158	+				+0.9
2,973,158	+				+0.9
2,973,158	+				-0.3
2,973,158	+				-1.0
2,973,158	+				-0.6
2,973,158	+				-1.6
2,973,159	-				-0.7
2,973,159	-				-1.3
2,973,159	-				-1.3
2,973,159	-				-2.5
2,973,159	-				+3.0
2,973,159	-				-1.4
2,973,159	-				-0.6
2,973,159	-				+0.4
2,973,160	+				+0.7
2,973,160	+				+0.7
2,973,160	+				+1.8
2,973,160	+				+1.2
2,973,160	+				-0.0
2,973,160	+				+1.4
2,973,160	+				-1.6
2,973,160	+				+2.4
2,973,161	-				-1.7
2,973,161	-				-0.4
2,973,161	-				+1.2
2,973,161	-				-1.1
2,973,161	-				-1.4
2,973,161	-				-1.8
2,973,161	-				-1.0
2,973,161	-				-1.7
2,973,161	-				-1.3
2,973,161	-				+0.7
2,973,162	+				+0.2
2,973,163	-				-0.4
2,973,163	-				-1.6
2,973,198	+				+0.7
2,973,204	+				-1.8
2,973,205	-				-0.9
2,973,219	+				+1.7
2,973,271	-				-0.1
2,973,271	-				+0.2
2,973,296	+				-1.6
2,973,296	+				-1.0
2,973,296	+				+1.6
2,973,297	-				-0.2
2,973,333	-				-1.4
2,973,353	-				-2.5
2,973,412	-		IAI47_14075	0.29	-0.6
2,973,412	-		IAI47_14075	0.29	-1.4
2,973,469	-		IAI47_14075	0.56	-1.1
2,973,475	-		IAI47_14075	0.59	-1.6
2,973,528	-		IAI47_14075	0.84	-2.1
2,973,537	-		IAI47_14075	0.89	-1.5
2,973,537	-		IAI47_14075	0.89	-0.1
2,973,543	-				+0.1
2,973,555	-				-1.6
2,973,562	+				+0.4
2,973,562	+				-1.4
2,973,562	+				-0.1
2,973,562	+				-0.9
2,973,563	-				-0.9
2,973,563	-				+0.9
2,973,563	-				-1.4
2,973,563	-				-1.1
2,973,563	-				-2.6
2,973,563	-				-1.1
2,973,563	-				-1.4
2,973,563	-				-1.6
2,973,563	-				-1.6
2,973,564	+				-2.7
2,973,565	-				-2.1
2,973,568	-				+0.4
2,973,568	-				-0.9
2,973,568	-				-2.1
2,973,568	-				-0.6
2,973,573	+				-0.6
2,973,574	-				-4.2
2,973,574	-				-1.9
2,973,574	-				+0.9
2,973,611	+				-0.1
2,973,612	-				-1.9
2,973,612	-				-2.8
2,973,612	-				-2.1
2,973,664	+				+1.1
2,973,678	-				+1.3
2,973,738	+				+0.2
2,973,738	+				+1.4
2,973,738	+				+0.3
2,973,738	+				-1.0
2,973,738	+				+0.8
2,973,739	-				-1.9
2,973,739	-				-1.1
2,973,739	-				-1.5
2,973,739	-				+1.6
2,973,739	-				-0.5
2,973,739	-				+1.1
2,973,757	+				+3.0
2,973,813	-				-1.5
2,973,831	-				+1.3
2,973,838	-				+1.2
2,973,847	-				+1.4
2,973,847	-				-1.1
2,973,850	-				+0.3
2,973,900	+				-1.6
2,973,900	+				+1.0
2,973,900	+				-1.7
2,973,901	-				-0.9
2,973,901	-				+0.1
2,973,961	-				-0.1
2,973,964	+				+1.6
2,974,019	+				-1.3
2,974,019	+				-1.0
2,974,019	+				+0.4
2,974,020	-				+1.3
2,974,020	-				+1.0
2,974,020	-				+1.1