Strain Fitness in Pantoea sp. MT58 around IAI47_13050

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,758,166	+		IAI47_13045	0.45	+1.5
2,758,205	+		IAI47_13045	0.48	+0.8
2,758,205	+		IAI47_13045	0.48	+1.4
2,758,206	-		IAI47_13045	0.48	+0.2
2,758,206	-		IAI47_13045	0.48	-1.0
2,758,206	-		IAI47_13045	0.48	+2.3
2,758,206	-		IAI47_13045	0.48	-0.5
2,758,342	-		IAI47_13045	0.61	+0.2
2,758,342	-		IAI47_13045	0.61	-0.6
2,758,347	+		IAI47_13045	0.61	+0.6
2,758,347	+		IAI47_13045	0.61	+0.4
2,758,347	+		IAI47_13045	0.61	+0.4
2,758,357	-		IAI47_13045	0.62	-0.4
2,758,357	-		IAI47_13045	0.62	-1.2
2,758,357	-		IAI47_13045	0.62	-1.1
2,758,357	-		IAI47_13045	0.62	+1.6
2,758,358	+		IAI47_13045	0.62	+0.8
2,758,359	-		IAI47_13045	0.62	-1.7
2,758,359	-		IAI47_13045	0.62	+2.4
2,758,359	-		IAI47_13045	0.62	+1.1
2,758,359	-		IAI47_13045	0.62	-0.0
2,758,385	+		IAI47_13045	0.64	+0.5
2,758,385	+		IAI47_13045	0.64	+0.9
2,758,385	+		IAI47_13045	0.64	+0.9
2,758,385	+		IAI47_13045	0.64	-0.2
2,758,385	+		IAI47_13045	0.64	+1.9
2,758,386	-		IAI47_13045	0.65	-0.0
2,758,386	-		IAI47_13045	0.65	-1.0
2,758,397	+		IAI47_13045	0.65	-1.0
2,758,397	+		IAI47_13045	0.65	-2.0
2,758,398	-		IAI47_13045	0.66	-0.1
2,758,398	-		IAI47_13045	0.66	+1.3
2,758,398	-		IAI47_13045	0.66	+2.4
2,758,455	+		IAI47_13045	0.71	-1.2
2,758,456	-		IAI47_13045	0.71	-0.2
2,758,456	-		IAI47_13045	0.71	-0.0
2,758,456	-		IAI47_13045	0.71	-0.3
2,758,456	-		IAI47_13045	0.71	+0.2
2,758,456	-		IAI47_13045	0.71	+1.0
2,758,457	+		IAI47_13045	0.71	+0.6
2,758,458	-		IAI47_13045	0.71	+0.3
2,758,458	-		IAI47_13045	0.71	-0.3
2,758,461	+		IAI47_13045	0.71	+2.1
2,758,461	+		IAI47_13045	0.71	+1.0
2,758,462	-		IAI47_13045	0.71	-2.8
2,758,548	-		IAI47_13045	0.79	+0.2
2,758,607	+		IAI47_13045	0.84	-1.0
2,758,607	+		IAI47_13045	0.84	+0.8
2,758,607	+		IAI47_13045	0.84	+0.7
2,758,607	+		IAI47_13045	0.84	+2.4
2,758,607	+		IAI47_13045	0.84	-0.8
2,758,608	-		IAI47_13045	0.85	-0.3
2,758,608	-		IAI47_13045	0.85	-2.6
2,758,649	+		IAI47_13045	0.88	-1.8
2,758,650	+		IAI47_13045	0.88	+2.7
2,758,650	+		IAI47_13045	0.88	+1.5
2,758,650	+		IAI47_13045	0.88	+1.5
2,758,662	+		IAI47_13045	0.89	-0.2
2,758,662	+		IAI47_13045	0.89	-1.6
2,758,662	+		IAI47_13045	0.89	-1.9
2,758,662	+		IAI47_13045	0.89	-0.3
2,758,662	+		IAI47_13045	0.89	+0.2
2,758,663	-		IAI47_13045	0.89	-1.1
2,758,679	+				-1.7
2,758,679	+				-1.1
2,758,679	+				-0.3
2,758,680	-				-1.2
2,758,696	-				+0.0
2,758,741	+				+0.9
2,758,741	+				-1.5
2,758,741	+				+0.1
2,758,742	-				+0.6
2,758,779	+				+1.5
2,758,807	+				+0.5
2,758,807	+				-0.7
2,758,807	+				+1.2
2,758,808	-				-1.3
2,758,808	-				-1.1
2,758,808	-				+0.6
2,758,808	-				+0.4
2,758,808	-				-1.1
2,758,808	-				-0.6
2,758,876	-				+0.4
2,758,890	+				-0.4
2,758,906	+				+0.9
2,758,968	+				-0.4
2,758,969	-				+0.7
2,758,969	-				+0.2
2,758,969	-				+0.4
2,758,983	+				+0.6
2,759,008	+				+0.8
2,759,008	+				-0.4
2,759,009	-				+1.4
2,759,009	-				+2.4
2,759,019	-				-0.4
2,759,019	-				+1.5
2,759,023	+				+0.9
2,759,024	-				+0.9
2,759,046	+				+0.8
2,759,046	+				-0.4
2,759,047	-				-1.1
2,759,060	+				-1.6
2,759,060	+				-1.1
2,759,061	-				+2.1
2,759,061	-				+1.0
2,759,061	-				+0.6
2,759,061	-				-0.3
2,759,061	-				-0.6
2,759,061	-				+1.6
2,759,070	+				-0.4
2,759,143	+				+1.0
2,759,143	+				+2.6
2,759,143	+				+0.1
2,759,143	+				-1.6
2,759,144	-				+1.6
2,759,165	+				-0.6
2,759,166	-				-2.4
2,759,286	+		IAI47_13050	0.25	-2.3
2,759,286	+		IAI47_13050	0.25	+0.8
2,759,287	-		IAI47_13050	0.26	-0.5
2,759,312	-		IAI47_13050	0.31	-2.3
2,759,361	+		IAI47_13050	0.41	-1.1
2,759,362	-		IAI47_13050	0.41	-1.3
2,759,362	-		IAI47_13050	0.41	-1.7
2,759,379	+		IAI47_13050	0.45	-2.4
2,759,380	-		IAI47_13050	0.45	-2.6
2,759,380	-		IAI47_13050	0.45	-0.5
2,759,583	+		IAI47_13050	0.87	-1.6
2,759,583	+		IAI47_13050	0.87	-0.5
2,759,584	-		IAI47_13050	0.88	-2.8
2,759,646	+				+0.5
2,759,646	+				+2.4
2,759,646	+				-2.0
2,759,647	-				+0.4
2,759,647	-				+1.1
2,759,666	-				-1.3
2,759,678	+				-1.8
2,759,679	-				-2.1
2,759,679	-				-0.8
2,759,679	-				+0.8
2,759,679	-				+0.0
2,759,679	-				-1.1
2,759,679	-				-1.9
2,759,684	-				-0.4
2,759,746	-				-1.3
2,759,806	-				+0.4
2,759,806	-				-0.5
2,759,806	-				+1.2
2,759,851	-		IAI47_13055	0.13	-0.9
2,759,889	+		IAI47_13055	0.17	-1.3
2,759,890	-		IAI47_13055	0.18	+0.8
2,759,972	+		IAI47_13055	0.27	+0.9
2,759,973	-		IAI47_13055	0.27	-1.0
2,760,094	-		IAI47_13055	0.40	-1.3
2,760,096	+		IAI47_13055	0.40	-0.4
2,760,096	+		IAI47_13055	0.40	-0.2
2,760,096	+		IAI47_13055	0.40	-2.1
2,760,096	+		IAI47_13055	0.40	-1.5
2,760,097	-		IAI47_13055	0.41	-0.5
2,760,114	+		IAI47_13055	0.42	+3.6
2,760,114	+		IAI47_13055	0.42	+0.2
2,760,115	-		IAI47_13055	0.43	-1.2
2,760,115	-		IAI47_13055	0.43	+0.5
2,760,144	+		IAI47_13055	0.46	+1.0
2,760,144	+		IAI47_13055	0.46	-0.2
2,760,144	+		IAI47_13055	0.46	-0.7
2,760,144	+		IAI47_13055	0.46	+0.4
2,760,144	+		IAI47_13055	0.46	-3.0
2,760,145	-		IAI47_13055	0.46	-0.2
2,760,145	-		IAI47_13055	0.46	-2.0
2,760,145	-		IAI47_13055	0.46	+0.4
2,760,145	-		IAI47_13055	0.46	-1.4
2,760,145	-		IAI47_13055	0.46	+3.1
2,760,145	-		IAI47_13055	0.46	+0.2
2,760,205	+		IAI47_13055	0.52	-2.1
2,760,206	-		IAI47_13055	0.53	+0.2
2,760,258	+		IAI47_13055	0.58	+1.4
2,760,259	-		IAI47_13055	0.58	-2.2
2,760,259	-		IAI47_13055	0.58	-1.7
2,760,378	-		IAI47_13055	0.72	-0.3
2,760,512	-				+2.4
2,760,513	+		IAI47_13055	0.87	+1.0
2,760,513	+		IAI47_13055	0.87	-0.3
2,760,513	+		IAI47_13055	0.87	+1.2
2,760,513	+		IAI47_13055	0.87	-0.9
2,760,514	-		IAI47_13055	0.87	-1.3
2,760,514	-		IAI47_13055	0.87	-1.2
2,760,514	-		IAI47_13055	0.87	+0.2
2,760,519	+		IAI47_13055	0.87	+0.2
2,760,519	+		IAI47_13055	0.87	-0.1
2,760,519	+		IAI47_13055	0.87	+1.0
2,760,519	+		IAI47_13055	0.87	+1.6
2,760,519	+		IAI47_13055	0.87	+1.5
2,760,519	+		IAI47_13055	0.87	+2.3
2,760,519	+		IAI47_13055	0.87	-0.3
2,760,519	+		IAI47_13055	0.87	-1.3
2,760,519	+		IAI47_13055	0.87	-0.8
2,760,519	+		IAI47_13055	0.87	-1.1
2,760,520	-		IAI47_13055	0.87	-0.1
2,760,520	-		IAI47_13055	0.87	+2.2
2,760,520	-		IAI47_13055	0.87	-1.0
2,760,520	-		IAI47_13055	0.87	-0.8
2,760,520	-		IAI47_13055	0.87	+0.7
2,760,520	-		IAI47_13055	0.87	-0.6
2,760,520	-		IAI47_13055	0.87	+1.4
2,760,520	-		IAI47_13055	0.87	-1.3
2,760,520	-		IAI47_13055	0.87	-1.0
2,760,520	-		IAI47_13055	0.87	+0.8
2,760,520	-		IAI47_13055	0.87	+1.2
2,760,520	-		IAI47_13055	0.87	+1.5
2,760,520	-		IAI47_13055	0.87	-1.5
2,760,520	-		IAI47_13055	0.87	+1.0
2,760,520	-		IAI47_13055	0.87	-1.6
2,760,520	-		IAI47_13055	0.87	+0.3
2,760,521	+		IAI47_13055	0.87	+1.3
2,760,521	+		IAI47_13055	0.87	-0.4
2,760,521	+		IAI47_13055	0.87	+1.3
2,760,521	+		IAI47_13055	0.87	+2.7
2,760,521	+		IAI47_13055	0.87	-0.4
2,760,521	+		IAI47_13055	0.87	+0.5
2,760,521	+		IAI47_13055	0.87	+1.4
2,760,521	+		IAI47_13055	0.87	-0.1
2,760,522	-		IAI47_13055	0.88	+0.0
2,760,522	-		IAI47_13055	0.88	+1.8
2,760,547	+				-1.5
2,760,597	-				-0.6
2,760,597	-				-0.0
2,760,625	+				+0.3
2,760,625	+				+2.8
2,760,625	+				-1.8
2,760,626	-				+0.0
2,760,630	-				+0.8