Strain Fitness in Pantoea sp. MT58 around IAI47_05755

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,196,022	+		IAI47_05750	0.24	-2.3
1,196,022	+		IAI47_05750	0.24	-0.7
1,196,022	+		IAI47_05750	0.24	+0.6
1,196,022	+		IAI47_05750	0.24	+1.2
1,196,023	-		IAI47_05750	0.24	+0.8
1,196,023	-		IAI47_05750	0.24	-0.6
1,196,149	-		IAI47_05750	0.37	+1.0
1,196,509	+		IAI47_05750	0.74	-1.8
1,196,509	+		IAI47_05750	0.74	-0.4
1,196,510	-		IAI47_05750	0.74	-3.1
1,196,510	-		IAI47_05750	0.74	-0.9
1,196,510	-		IAI47_05750	0.74	-1.3
1,196,517	+		IAI47_05750	0.75	-0.2
1,196,517	+		IAI47_05750	0.75	+1.5
1,196,517	+		IAI47_05750	0.75	+2.0
1,196,517	+		IAI47_05750	0.75	-1.7
1,196,517	+		IAI47_05750	0.75	-0.1
1,196,517	+		IAI47_05750	0.75	-0.9
1,196,517	+		IAI47_05750	0.75	-1.3
1,196,517	+		IAI47_05750	0.75	-1.5
1,196,517	+		IAI47_05750	0.75	-0.2
1,196,518	-		IAI47_05750	0.75	+1.3
1,196,518	-		IAI47_05750	0.75	-1.4
1,196,518	-		IAI47_05750	0.75	-0.9
1,196,518	-		IAI47_05750	0.75	+0.3
1,196,518	-		IAI47_05750	0.75	-0.4
1,196,518	-		IAI47_05750	0.75	-0.3
1,196,518	-		IAI47_05750	0.75	+1.8
1,196,521	+		IAI47_05750	0.75	-3.4
1,196,522	-		IAI47_05750	0.75	+0.5
1,196,522	-		IAI47_05750	0.75	-1.8
1,196,522	-		IAI47_05750	0.75	+0.7
1,196,522	-		IAI47_05750	0.75	+0.5
1,196,569	+		IAI47_05750	0.80	+1.6
1,196,569	+		IAI47_05750	0.80	-0.5
1,196,569	+		IAI47_05750	0.80	-1.3
1,196,569	+		IAI47_05750	0.80	-0.8
1,196,569	+		IAI47_05750	0.80	-0.1
1,196,569	+		IAI47_05750	0.80	+1.7
1,196,569	+		IAI47_05750	0.80	+0.9
1,196,569	+		IAI47_05750	0.80	+0.2
1,196,569	+		IAI47_05750	0.80	+1.9
1,196,570	-		IAI47_05750	0.80	-0.1
1,196,570	-		IAI47_05750	0.80	-2.0
1,196,570	-		IAI47_05750	0.80	-0.3
1,196,570	-		IAI47_05750	0.80	-0.1
1,196,570	-		IAI47_05750	0.80	+1.1
1,196,570	-		IAI47_05750	0.80	-0.3
1,196,570	-		IAI47_05750	0.80	+0.3
1,196,584	+		IAI47_05750	0.82	+0.6
1,196,675	+				-0.5
1,196,676	-				-0.7
1,196,676	-				-1.5
1,196,676	-				-0.2
1,196,676	-				+1.0
1,196,676	-				+3.6
1,196,695	+				+2.7
1,196,699	+				+1.3
1,196,699	+				-1.2
1,196,699	+				-0.3
1,196,699	+				-1.8
1,196,699	+				+1.4
1,196,699	+				+0.2
1,196,699	+				+0.6
1,196,699	+				+0.2
1,196,700	-				-0.2
1,196,700	-				-3.2
1,196,700	-				-0.7
1,196,700	-				-0.3
1,196,700	-				+1.5
1,196,700	-				+1.5
1,196,700	-				-3.1
1,196,700	-				-1.1
1,196,700	-				+0.6
1,196,700	-				-1.4
1,196,700	-				-1.6
1,196,700	-				+2.2
1,196,700	-				+0.1
1,196,700	-				-1.7
1,196,700	-				-2.5
1,196,700	-				-0.0
1,196,740	+				-0.4
1,196,741	-				-0.3
1,196,828	+				+0.4
1,196,828	+				-1.5
1,196,829	-				-1.5
1,196,829	-				+0.4
1,196,831	-				-2.2
1,196,832	+				-1.5
1,196,832	+				+0.8
1,196,833	-				+0.1
1,196,861	+				+0.0
1,196,861	+				-1.8
1,196,861	+				-1.9
1,196,862	-				-1.9
1,196,862	-				-0.7
1,196,862	-				+1.2
1,196,862	-				-1.8
1,196,862	-				-0.3
1,196,862	-				+0.1
1,196,879	+				-0.8
1,196,880	-				-0.5
1,196,893	+				+0.8
1,196,893	+				+0.5
1,196,894	-				+3.3
1,196,894	-				-1.7
1,196,925	+				+2.4
1,196,925	+				-1.0
1,196,986	+		IAI47_05755	0.29	-2.1
1,196,986	+		IAI47_05755	0.29	-2.1
1,196,986	+		IAI47_05755	0.29	-1.0
1,197,043	+		IAI47_05755	0.48	+0.7
1,197,044	-		IAI47_05755	0.48	-1.5
1,197,044	-		IAI47_05755	0.48	-1.2
1,197,044	-		IAI47_05755	0.48	-1.5
1,197,070	+		IAI47_05755	0.57	-1.8
1,197,126	+		IAI47_05755	0.75	+1.7
1,197,127	-		IAI47_05755	0.76	-1.6
1,197,127	-		IAI47_05755	0.76	+0.7
1,197,127	-		IAI47_05755	0.76	-0.6
1,197,127	-		IAI47_05755	0.76	-3.7
1,197,214	+				+0.9
1,197,214	+				-2.1
1,197,214	+				-0.8
1,197,214	+				-0.1
1,197,215	-				-0.4
1,197,215	-				-2.0
1,197,215	-				-0.3
1,197,215	-				+0.0
1,197,216	+				+0.7
1,197,216	+				+0.0
1,197,217	-				+0.2
1,197,217	-				-2.1
1,197,277	+				+3.3
1,197,277	+				+0.4
1,197,278	-				+0.8
1,197,295	+				+0.3
1,197,324	+				+0.7
1,197,324	+				-0.1
1,197,375	+		IAI47_05760	0.20	+0.3
1,197,375	+		IAI47_05760	0.20	+0.1
1,197,376	-		IAI47_05760	0.20	+0.1
1,197,439	+		IAI47_05760	0.40	+1.3
1,197,440	-		IAI47_05760	0.41	-1.2
1,197,440	-		IAI47_05760	0.41	+0.5
1,197,440	-		IAI47_05760	0.41	-2.6
1,197,462	-		IAI47_05760	0.48	+0.2
1,197,514	+		IAI47_05760	0.64	-0.8
1,197,514	+		IAI47_05760	0.64	-0.4
1,197,514	+		IAI47_05760	0.64	-0.2
1,197,514	+		IAI47_05760	0.64	+2.2
1,197,515	-		IAI47_05760	0.65	+0.1
1,197,515	-		IAI47_05760	0.65	+0.9
1,197,515	-		IAI47_05760	0.65	+0.2
1,197,515	-		IAI47_05760	0.65	-0.0
1,197,515	-		IAI47_05760	0.65	-0.6
1,197,515	-		IAI47_05760	0.65	-0.4
1,197,515	-		IAI47_05760	0.65	+1.1
1,197,515	-		IAI47_05760	0.65	+0.2
1,197,515	-		IAI47_05760	0.65	+0.8
1,197,600	+				-0.2
1,197,600	+				+2.0
1,197,600	+				-2.2
1,197,600	+				+0.7
1,197,600	+				-0.7
1,197,600	+				-1.6
1,197,601	-				+1.3
1,197,601	-				-0.7
1,197,601	-				-0.1
1,197,601	-				-1.1
1,197,601	-				+0.4
1,197,624	+				+1.4
1,197,624	+				+0.9
1,197,624	+				-1.5
1,197,624	+				-0.9
1,197,624	+				-1.0
1,197,625	-				-2.1
1,197,625	-				-2.4
1,197,625	-				+1.4
1,197,625	-				-1.0
1,197,625	-				-0.8
1,197,625	-				+0.6
1,197,642	+				-1.3
1,197,642	+				-3.1
1,197,685	-		IAI47_05765	0.24	+1.5
1,197,830	+		IAI47_05765	0.85	-1.3
1,197,831	-		IAI47_05765	0.86	+1.1
1,197,831	-		IAI47_05765	0.86	-1.4
1,197,831	-		IAI47_05765	0.86	+1.3
1,197,852	+				+1.6
1,197,852	+				-2.3
1,197,852	+				-1.6
1,197,852	+				+2.9
1,197,852	+				-1.2
1,197,852	+				-0.4
1,197,853	-				-0.6
1,197,853	-				+0.1
1,197,853	-				-1.7
1,197,853	-				+1.4
1,197,867	+				+0.4
1,197,867	+				+2.3
1,197,867	+				-1.1
1,197,867	+				-2.2
1,197,867	+				-2.1
1,197,877	-				+0.8
1,197,877	-				+0.5
1,197,885	+				+0.2
1,197,886	-				+2.4
1,197,886	-				-1.5
1,197,886	-				-0.8
1,197,886	-				-1.6
1,197,886	-				-0.3
1,197,918	+				+0.5
1,197,938	+				-1.1
1,197,938	+				+0.0
1,197,939	-				+0.8
1,197,946	-				-0.6
1,197,946	-				+0.8
1,197,946	-				+0.5
1,197,975	+				+1.9
1,197,975	+				-1.5
1,197,975	+				+0.0
1,197,976	-				+0.3
1,197,976	-				+0.5
1,197,976	-				-2.0
1,198,019	+				-0.4
1,198,020	-				+0.3
1,198,055	+				-1.1
1,198,055	+				+0.8
1,198,055	+				-1.4
1,198,055	+				-0.5
1,198,056	-				+0.2
1,198,056	-				+1.0
1,198,056	-				+0.4
1,198,056	-				+0.0
1,198,056	-				+0.6
1,198,056	-				-0.3
1,198,056	-				-2.3
1,198,056	-				+0.9
1,198,059	+				-1.3
1,198,059	+				+2.0
1,198,059	+				-1.8
1,198,060	-				-1.9
1,198,060	-				+2.0
1,198,060	-				+0.2
1,198,060	-				-0.5
1,198,068	+				+0.9
1,198,069	-				+0.1
1,198,090	+				+2.7
1,198,090	+				-2.0
1,198,091	-				-1.3
1,198,091	-				+2.4
1,198,091	-				+0.1
1,198,091	-				+0.0
1,198,145	+				-2.2
1,198,145	+				+1.9
1,198,146	-				+1.8
1,198,146	-				-0.2
1,198,146	-				-0.8
1,198,146	-				+1.0
1,198,146	-				+0.3
1,198,161	+				-0.6