Strain Fitness in Pantoea sp. MT58 around IAI47_05220

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,103,051	+		IAI47_05210	0.67	+0.0
1,103,051	+		IAI47_05210	0.67	-2.3
1,103,052	-		IAI47_05210	0.67	+0.2
1,103,052	-		IAI47_05210	0.67	-1.4
1,103,084	-		IAI47_05210	0.73	-0.5
1,103,084	-		IAI47_05210	0.73	-1.1
1,103,084	-		IAI47_05210	0.73	-0.4
1,103,167	+		IAI47_05210	0.86	+1.8
1,103,167	+		IAI47_05210	0.86	-0.0
1,103,168	-		IAI47_05210	0.87	+1.9
1,103,168	-		IAI47_05210	0.87	-1.5
1,103,168	-		IAI47_05210	0.87	-1.8
1,103,178	+		IAI47_05210	0.88	-1.0
1,103,179	-		IAI47_05210	0.88	-2.0
1,103,179	-		IAI47_05210	0.88	-0.3
1,103,206	-				-1.4
1,103,228	+				-1.0
1,103,246	+				-2.1
1,103,247	-				+2.7
1,103,247	-				-0.4
1,103,247	-				+2.0
1,103,254	-				+2.2
1,103,254	-				-0.3
1,103,258	-				+1.5
1,103,258	-				-0.3
1,103,258	-				-0.0
1,103,262	-				+1.1
1,103,262	-				-0.8
1,103,276	+				+0.2
1,103,324	-				-0.3
1,103,324	-				-0.1
1,103,340	+		IAI47_05215	0.10	-0.6
1,103,355	+		IAI47_05215	0.12	-0.4
1,103,357	+		IAI47_05215	0.13	+1.4
1,103,357	+		IAI47_05215	0.13	+0.3
1,103,357	+		IAI47_05215	0.13	+0.9
1,103,358	-		IAI47_05215	0.13	-0.2
1,103,362	+		IAI47_05215	0.14	-0.4
1,103,387	-		IAI47_05215	0.18	-1.2
1,103,387	-		IAI47_05215	0.18	+2.1
1,103,416	+		IAI47_05215	0.22	-1.0
1,103,435	+		IAI47_05215	0.26	+1.1
1,103,445	+		IAI47_05215	0.27	+2.0
1,103,445	+		IAI47_05215	0.27	+1.4
1,103,446	-		IAI47_05215	0.27	-0.2
1,103,450	+		IAI47_05215	0.28	+0.4
1,103,450	+		IAI47_05215	0.28	+3.8
1,103,450	+		IAI47_05215	0.28	+0.4
1,103,450	+		IAI47_05215	0.28	+0.6
1,103,450	+		IAI47_05215	0.28	-0.6
1,103,451	-		IAI47_05215	0.28	+1.6
1,103,471	-		IAI47_05215	0.32	+0.6
1,103,501	-		IAI47_05215	0.36	+0.5
1,103,524	+		IAI47_05215	0.40	+0.7
1,103,569	-		IAI47_05215	0.48	+1.0
1,103,588	+		IAI47_05215	0.51	+0.7
1,103,588	+		IAI47_05215	0.51	-1.8
1,103,588	+		IAI47_05215	0.51	-0.5
1,103,589	-		IAI47_05215	0.51	-1.1
1,103,589	-		IAI47_05215	0.51	+0.7
1,103,589	-		IAI47_05215	0.51	+1.3
1,103,591	+		IAI47_05215	0.51	+0.8
1,103,591	+		IAI47_05215	0.51	-1.8
1,103,591	+		IAI47_05215	0.51	+1.4
1,103,592	-		IAI47_05215	0.51	-1.5
1,103,592	-		IAI47_05215	0.51	+1.2
1,103,668	+		IAI47_05215	0.64	+0.5
1,103,668	+		IAI47_05215	0.64	+0.0
1,103,668	+		IAI47_05215	0.64	-0.7
1,103,669	-		IAI47_05215	0.64	+0.5
1,103,690	+		IAI47_05215	0.67	+1.5
1,103,755	+		IAI47_05215	0.78	+0.9
1,103,755	+		IAI47_05215	0.78	-2.7
1,103,755	+		IAI47_05215	0.78	+2.5
1,103,755	+		IAI47_05215	0.78	-0.5
1,103,755	+		IAI47_05215	0.78	-2.6
1,103,755	+		IAI47_05215	0.78	+2.2
1,103,755	+		IAI47_05215	0.78	+3.8
1,103,755	+		IAI47_05215	0.78	-2.3
1,103,756	-		IAI47_05215	0.78	+1.2
1,103,756	-		IAI47_05215	0.78	+0.1
1,103,756	-		IAI47_05215	0.78	+0.6
1,103,756	-		IAI47_05215	0.78	+1.1
1,103,756	-		IAI47_05215	0.78	-2.1
1,103,756	-		IAI47_05215	0.78	+0.5
1,103,756	-		IAI47_05215	0.78	-0.4
1,103,756	-		IAI47_05215	0.78	-1.0
1,103,756	-		IAI47_05215	0.78	+0.7
1,103,756	-		IAI47_05215	0.78	+1.6
1,103,821	+		IAI47_05215	0.89	-0.4
1,103,821	+		IAI47_05215	0.89	+1.1
1,103,821	+		IAI47_05215	0.89	-3.1
1,103,821	+		IAI47_05215	0.89	-2.9
1,103,821	+		IAI47_05215	0.89	-1.3
1,103,821	+		IAI47_05215	0.89	-0.6
1,103,821	+		IAI47_05215	0.89	-1.1
1,103,822	-		IAI47_05215	0.89	+0.3
1,103,822	-		IAI47_05215	0.89	-1.9
1,103,822	-		IAI47_05215	0.89	-1.2
1,103,822	-		IAI47_05215	0.89	-0.9
1,103,822	-		IAI47_05215	0.89	-0.1
1,103,822	-		IAI47_05215	0.89	+4.9
1,103,822	-		IAI47_05215	0.89	-0.3
1,103,822	-		IAI47_05215	0.89	-1.0
1,103,823	-		IAI47_05215	0.89	-1.3
1,103,867	+				-1.1
1,103,885	+				-2.2
1,103,885	+				+1.4
1,103,886	-				+0.4
1,103,886	-				-0.9
1,103,886	-				-0.3
1,103,886	-				+0.4
1,103,886	-				+0.8
1,103,886	-				+0.7
1,103,941	+				-0.9
1,103,941	+				+0.3
1,103,942	-				-1.0
1,103,942	-				-1.0
1,103,946	-				+1.6
1,103,952	+				-1.3
1,103,952	+				-0.3
1,103,952	+				+1.3
1,103,952	+				-0.4
1,103,952	+				+1.6
1,103,952	+				-1.6
1,103,952	+				+1.0
1,103,953	-				+1.3
1,103,953	-				-2.2
1,103,953	-				-1.1
1,103,953	-				+0.4
1,103,954	+				-0.8
1,103,954	+				+0.0
1,103,954	+				+0.6
1,103,954	+				-0.1
1,103,954	+				+0.9
1,103,954	+				+1.0
1,103,954	+				-1.8
1,103,955	-				+0.7
1,103,964	-				-1.4
1,103,968	+				+0.1
1,103,969	-				+1.7
1,103,969	-				-0.1
1,104,023	+				+1.0
1,104,032	+				-1.7
1,104,140	+		IAI47_05220	0.12	+0.9
1,104,140	+		IAI47_05220	0.12	-2.4
1,104,141	-		IAI47_05220	0.13	-0.2
1,104,157	+		IAI47_05220	0.14	-0.4
1,104,157	+		IAI47_05220	0.14	-1.1
1,104,157	+		IAI47_05220	0.14	-0.1
1,104,157	+		IAI47_05220	0.14	+0.6
1,104,157	+		IAI47_05220	0.14	+0.4
1,104,158	-				-0.4
1,104,203	+		IAI47_05220	0.19	-0.2
1,104,203	+		IAI47_05220	0.19	-1.5
1,104,204	-		IAI47_05220	0.19	+0.7
1,104,204	-		IAI47_05220	0.19	+0.0
1,104,204	-		IAI47_05220	0.19	+0.3
1,104,281	-		IAI47_05220	0.26	+0.7
1,104,307	+		IAI47_05220	0.29	+2.1
1,104,308	-		IAI47_05220	0.29	+0.5
1,104,308	-		IAI47_05220	0.29	+0.7
1,104,308	-		IAI47_05220	0.29	+0.2
1,104,342	+		IAI47_05220	0.32	-1.0
1,104,342	+		IAI47_05220	0.32	-0.3
1,104,342	+		IAI47_05220	0.32	+0.1
1,104,342	+		IAI47_05220	0.32	-0.4
1,104,342	+		IAI47_05220	0.32	+1.1
1,104,342	+		IAI47_05220	0.32	+1.9
1,104,342	+		IAI47_05220	0.32	+0.0
1,104,342	+		IAI47_05220	0.32	+0.3
1,104,342	+		IAI47_05220	0.32	-1.1
1,104,342	+		IAI47_05220	0.32	-2.9
1,104,342	+		IAI47_05220	0.32	+0.1
1,104,343	-		IAI47_05220	0.32	+0.0
1,104,343	-		IAI47_05220	0.32	+2.1
1,104,343	-		IAI47_05220	0.32	+0.1
1,104,343	-		IAI47_05220	0.32	-0.6
1,104,343	-		IAI47_05220	0.32	+0.1
1,104,343	-		IAI47_05220	0.32	-0.4
1,104,343	-		IAI47_05220	0.32	+0.6
1,104,343	-		IAI47_05220	0.32	+0.9
1,104,440	+		IAI47_05220	0.42	+2.0
1,104,440	+		IAI47_05220	0.42	-2.3
1,104,441	-		IAI47_05220	0.42	+0.3
1,104,441	-		IAI47_05220	0.42	-0.2
1,104,610	+		IAI47_05220	0.58	-0.6
1,104,672	+		IAI47_05220	0.64	-0.3
1,104,673	-		IAI47_05220	0.65	-1.1
1,104,745	-		IAI47_05220	0.72	+0.0
1,104,759	+		IAI47_05220	0.73	+2.6
1,104,759	+		IAI47_05220	0.73	+1.4
1,104,760	-		IAI47_05220	0.73	+2.0
1,104,962	+				+1.8
1,104,962	+				+0.8
1,104,962	+				+1.2
1,104,962	+				+0.2
1,104,994	+				+0.6
1,104,994	+				-2.4
1,104,994	+				+0.9
1,104,995	-				+2.4
1,104,995	-				-0.0
1,105,033	+				+0.6
1,105,043	+				+2.7
1,105,043	+				+0.2
1,105,043	+				-0.4
1,105,043	+				-0.4
1,105,043	+				+0.0
1,105,043	+				+0.5
1,105,043	+				+1.3
1,105,043	+				-1.5
1,105,043	+				-2.2
1,105,044	-				+0.6
1,105,044	-				+1.3
1,105,044	-				+0.8
1,105,044	-				+2.1
1,105,044	-				+2.8
1,105,044	-				-1.2
1,105,045	+				+0.5
1,105,045	+				+1.0
1,105,045	+				+0.3
1,105,045	+				+0.1
1,105,046	-				+1.1
1,105,046	-				+2.0
1,105,046	-				+0.3
1,105,046	-				+0.2
1,105,046	-				-1.3
1,105,046	-				+0.7
1,105,121	+				-1.4
1,105,121	+				-0.1
1,105,121	+				-2.1
1,105,121	+				+0.8
1,105,122	-		IAI47_05225	0.10	-1.0
1,105,122	-		IAI47_05225	0.10	-0.3
1,105,207	+		IAI47_05225	0.18	-1.6
1,105,207	+		IAI47_05225	0.18	-2.5
1,105,207	+		IAI47_05225	0.18	-0.5
1,105,208	-		IAI47_05225	0.18	-0.3
1,105,208	-		IAI47_05225	0.18	+0.8
1,105,274	+		IAI47_05225	0.25	-1.2
1,105,274	+		IAI47_05225	0.25	+2.1
1,105,274	+		IAI47_05225	0.25	-1.5
1,105,275	-		IAI47_05225	0.25	+0.9
1,105,275	-		IAI47_05225	0.25	+0.3
1,105,277	+		IAI47_05225	0.25	+0.0
1,105,277	+		IAI47_05225	0.25	+1.4
1,105,278	-		IAI47_05225	0.25	-2.5
1,105,328	+		IAI47_05225	0.30	-0.4
1,105,328	+		IAI47_05225	0.30	+0.0
1,105,328	+		IAI47_05225	0.30	-0.8
1,105,329	-		IAI47_05225	0.30	-0.6
1,105,329	-		IAI47_05225	0.30	+0.7
1,105,331	-		IAI47_05225	0.30	-1.3
1,105,331	-		IAI47_05225	0.30	+2.0
1,105,331	-		IAI47_05225	0.30	-0.9
1,105,363	+		IAI47_05225	0.34	-2.5
1,105,418	-		IAI47_05225	0.39	+0.2
1,105,418	-		IAI47_05225	0.39	+2.2
1,105,418	-		IAI47_05225	0.39	+0.6
1,105,488	-		IAI47_05225	0.46	+0.7
1,105,488	-		IAI47_05225	0.46	-0.7
1,105,488	-		IAI47_05225	0.46	-0.7
1,105,488	-		IAI47_05225	0.46	-1.1
1,105,489	+		IAI47_05225	0.46	+0.8
1,105,490	-		IAI47_05225	0.46	-0.6
1,105,490	-		IAI47_05225	0.46	-0.1
1,105,490	-		IAI47_05225	0.46	-0.6
1,105,490	-		IAI47_05225	0.46	+2.2
1,105,505	+		IAI47_05225	0.48	-0.3
1,105,506	-		IAI47_05225	0.48	-1.6
1,105,506	-		IAI47_05225	0.48	+1.2
1,105,535	+		IAI47_05225	0.50	-2.6
1,105,535	+		IAI47_05225	0.50	-1.9
1,105,535	+		IAI47_05225	0.50	-0.1
1,105,536	-		IAI47_05225	0.51	+0.8
1,105,536	-		IAI47_05225	0.51	-0.9
1,105,536	-		IAI47_05225	0.51	+0.4
1,105,536	-		IAI47_05225	0.51	-1.0
1,105,642	+		IAI47_05225	0.61	+2.4
1,105,642	+		IAI47_05225	0.61	-1.1
1,105,643	-		IAI47_05225	0.61	-1.4
1,105,655	+		IAI47_05225	0.62	+1.6
1,105,655	+		IAI47_05225	0.62	-0.0
1,105,656	-		IAI47_05225	0.62	+1.0
1,105,656	-		IAI47_05225	0.62	-1.2
1,105,698	-		IAI47_05225	0.66	-2.8
1,105,698	-		IAI47_05225	0.66	-1.4
1,105,712	+		IAI47_05225	0.68	+2.0
1,105,713	-		IAI47_05225	0.68	-2.1
1,105,784	+		IAI47_05225	0.75	-1.3
1,105,785	-		IAI47_05225	0.75	-1.0
1,105,785	-		IAI47_05225	0.75	-0.5
1,105,785	-		IAI47_05225	0.75	-1.0
1,105,789	+		IAI47_05225	0.75	+1.9
1,105,955	+				-2.1
1,105,955	+				+0.9
1,105,956	-				-1.4
1,106,021	+				-1.4