Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03395 and IAI47_03400 are separated by 248 nucleotides IAI47_03400 and IAI47_03405 are separated by 61 nucleotides
IAI47_03395: IAI47_03395 - metal-dependent hydrolase, at 707,854 to 708,651
_03395
IAI47_03400: IAI47_03400 - deoxyribose-phosphate aldolase, at 708,900 to 709,679
_03400
IAI47_03405: IAI47_03405 - thymidine phosphorylase, at 709,741 to 711,069
_03405
Position (kb) 708
709
710 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 708.025 kb on + strand, within IAI47_03395 at 708.025 kb on + strand, within IAI47_03395 at 708.026 kb on - strand, within IAI47_03395 at 708.098 kb on + strand, within IAI47_03395 at 708.099 kb on - strand, within IAI47_03395 at 708.155 kb on - strand, within IAI47_03395 at 708.155 kb on - strand, within IAI47_03395 at 708.177 kb on + strand, within IAI47_03395 at 708.207 kb on + strand, within IAI47_03395 at 708.207 kb on + strand, within IAI47_03395 at 708.207 kb on + strand, within IAI47_03395 at 708.207 kb on + strand, within IAI47_03395 at 708.207 kb on + strand, within IAI47_03395 at 708.207 kb on + strand, within IAI47_03395 at 708.207 kb on + strand, within IAI47_03395 at 708.208 kb on - strand, within IAI47_03395 at 708.208 kb on - strand, within IAI47_03395 at 708.208 kb on - strand, within IAI47_03395 at 708.208 kb on - strand, within IAI47_03395 at 708.208 kb on - strand, within IAI47_03395 at 708.208 kb on - strand, within IAI47_03395 at 708.223 kb on + strand, within IAI47_03395 at 708.354 kb on + strand, within IAI47_03395 at 708.355 kb on - strand, within IAI47_03395 at 708.357 kb on + strand, within IAI47_03395 at 708.357 kb on + strand, within IAI47_03395 at 708.357 kb on + strand, within IAI47_03395 at 708.357 kb on + strand, within IAI47_03395 at 708.357 kb on + strand, within IAI47_03395 at 708.357 kb on + strand, within IAI47_03395 at 708.358 kb on - strand, within IAI47_03395 at 708.358 kb on - strand, within IAI47_03395 at 708.358 kb on - strand, within IAI47_03395 at 708.358 kb on - strand, within IAI47_03395 at 708.393 kb on + strand, within IAI47_03395 at 708.393 kb on + strand, within IAI47_03395 at 708.393 kb on + strand, within IAI47_03395 at 708.393 kb on + strand, within IAI47_03395 at 708.394 kb on - strand, within IAI47_03395 at 708.394 kb on - strand, within IAI47_03395 at 708.394 kb on - strand, within IAI47_03395 at 708.397 kb on + strand, within IAI47_03395 at 708.397 kb on + strand, within IAI47_03395 at 708.397 kb on + strand, within IAI47_03395 at 708.398 kb on - strand, within IAI47_03395 at 708.398 kb on - strand, within IAI47_03395 at 708.398 kb on - strand, within IAI47_03395 at 708.398 kb on - strand, within IAI47_03395 at 708.398 kb on - strand, within IAI47_03395 at 708.398 kb on - strand, within IAI47_03395 at 708.398 kb on - strand, within IAI47_03395 at 708.398 kb on - strand, within IAI47_03395 at 708.477 kb on + strand, within IAI47_03395 at 708.646 kb on - strand at 708.646 kb on - strand at 708.697 kb on + strand at 708.697 kb on + strand at 708.703 kb on + strand at 708.703 kb on + strand at 708.723 kb on + strand at 708.723 kb on + strand at 708.723 kb on + strand at 708.724 kb on - strand at 708.724 kb on - strand at 708.724 kb on - strand at 708.724 kb on - strand at 708.724 kb on - strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.725 kb on + strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.726 kb on - strand at 708.745 kb on - strand at 708.745 kb on - strand at 708.745 kb on - strand at 708.818 kb on + strand at 708.818 kb on + strand at 708.818 kb on + strand at 708.819 kb on - strand at 708.819 kb on - strand at 708.819 kb on - strand at 708.843 kb on - strand at 709.007 kb on + strand, within IAI47_03400 at 709.007 kb on + strand, within IAI47_03400 at 709.040 kb on + strand, within IAI47_03400 at 709.040 kb on + strand, within IAI47_03400 at 709.040 kb on + strand, within IAI47_03400 at 709.040 kb on + strand, within IAI47_03400 at 709.040 kb on + strand, within IAI47_03400 at 709.041 kb on - strand, within IAI47_03400 at 709.041 kb on - strand, within IAI47_03400 at 709.041 kb on - strand, within IAI47_03400 at 709.041 kb on - strand, within IAI47_03400 at 709.041 kb on - strand, within IAI47_03400 at 709.041 kb on - strand, within IAI47_03400 at 709.044 kb on + strand, within IAI47_03400 at 709.045 kb on - strand, within IAI47_03400 at 709.056 kb on - strand, within IAI47_03400 at 709.071 kb on - strand, within IAI47_03400 at 709.185 kb on + strand, within IAI47_03400 at 709.185 kb on + strand, within IAI47_03400 at 709.274 kb on + strand, within IAI47_03400 at 709.412 kb on + strand, within IAI47_03400 at 709.431 kb on - strand, within IAI47_03400 at 709.516 kb on + strand, within IAI47_03400 at 709.516 kb on + strand, within IAI47_03400 at 709.517 kb on - strand, within IAI47_03400 at 709.520 kb on + strand, within IAI47_03400 at 709.520 kb on + strand, within IAI47_03400 at 709.542 kb on + strand, within IAI47_03400 at 709.542 kb on + strand, within IAI47_03400 at 709.543 kb on - strand, within IAI47_03400 at 709.543 kb on - strand, within IAI47_03400 at 709.562 kb on + strand, within IAI47_03400 at 709.562 kb on + strand, within IAI47_03400 at 709.562 kb on + strand, within IAI47_03400 at 709.562 kb on + strand, within IAI47_03400 at 709.562 kb on + strand, within IAI47_03400 at 709.563 kb on - strand, within IAI47_03400 at 709.563 kb on - strand, within IAI47_03400 at 709.563 kb on - strand, within IAI47_03400 at 709.634 kb on + strand at 709.634 kb on + strand at 709.634 kb on + strand at 709.634 kb on + strand at 709.635 kb on - strand at 709.674 kb on + strand at 709.674 kb on + strand at 709.738 kb on - strand at 709.738 kb on - strand at 709.761 kb on + strand at 709.819 kb on - strand at 709.833 kb on + strand at 709.833 kb on + strand at 709.834 kb on - strand at 709.879 kb on + strand, within IAI47_03405 at 709.879 kb on + strand, within IAI47_03405 at 709.879 kb on + strand, within IAI47_03405 at 709.880 kb on - strand, within IAI47_03405 at 709.880 kb on - strand, within IAI47_03405 at 709.880 kb on - strand, within IAI47_03405 at 709.880 kb on - strand, within IAI47_03405 at 709.890 kb on + strand, within IAI47_03405 at 709.890 kb on + strand, within IAI47_03405 at 709.891 kb on - strand, within IAI47_03405 at 709.950 kb on + strand, within IAI47_03405 at 709.989 kb on + strand, within IAI47_03405 at 710.018 kb on + strand, within IAI47_03405 at 710.018 kb on + strand, within IAI47_03405 at 710.018 kb on + strand, within IAI47_03405 at 710.018 kb on + strand, within IAI47_03405 at 710.018 kb on + strand, within IAI47_03405 at 710.019 kb on - strand, within IAI47_03405 at 710.019 kb on - strand, within IAI47_03405 at 710.033 kb on + strand, within IAI47_03405 at 710.033 kb on + strand, within IAI47_03405 at 710.033 kb on + strand, within IAI47_03405 at 710.033 kb on + strand, within IAI47_03405 at 710.034 kb on - strand, within IAI47_03405 at 710.034 kb on - strand, within IAI47_03405 at 710.062 kb on + strand, within IAI47_03405 at 710.062 kb on + strand, within IAI47_03405 at 710.063 kb on - strand, within IAI47_03405 at 710.142 kb on + strand, within IAI47_03405 at 710.142 kb on + strand, within IAI47_03405 at 710.143 kb on - strand, within IAI47_03405 at 710.143 kb on - strand, within IAI47_03405 at 710.179 kb on - strand, within IAI47_03405 at 710.242 kb on + strand, within IAI47_03405 at 710.242 kb on + strand, within IAI47_03405 at 710.243 kb on - strand, within IAI47_03405 at 710.370 kb on + strand, within IAI47_03405 at 710.371 kb on - strand, within IAI47_03405 at 710.380 kb on + strand, within IAI47_03405 at 710.380 kb on + strand, within IAI47_03405 at 710.380 kb on + strand, within IAI47_03405 at 710.380 kb on + strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405 at 710.381 kb on - strand, within IAI47_03405
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 708,025 + IAI47_03395 0.21 +0.0 708,025 + IAI47_03395 0.21 +0.4 708,026 - IAI47_03395 0.22 +1.1 708,098 + IAI47_03395 0.31 +1.3 708,099 - IAI47_03395 0.31 -2.7 708,155 - IAI47_03395 0.38 +0.4 708,155 - IAI47_03395 0.38 -2.1 708,177 + IAI47_03395 0.40 +0.7 708,207 + IAI47_03395 0.44 +0.7 708,207 + IAI47_03395 0.44 +1.1 708,207 + IAI47_03395 0.44 -1.0 708,207 + IAI47_03395 0.44 -2.0 708,207 + IAI47_03395 0.44 -1.3 708,207 + IAI47_03395 0.44 -2.0 708,207 + IAI47_03395 0.44 -1.2 708,208 - IAI47_03395 0.44 +1.4 708,208 - IAI47_03395 0.44 +0.6 708,208 - IAI47_03395 0.44 +1.1 708,208 - IAI47_03395 0.44 +1.2 708,208 - IAI47_03395 0.44 +0.8 708,208 - IAI47_03395 0.44 +1.1 708,223 + IAI47_03395 0.46 -2.9 708,354 + IAI47_03395 0.63 -0.2 708,355 - IAI47_03395 0.63 +1.6 708,357 + IAI47_03395 0.63 +2.6 708,357 + IAI47_03395 0.63 -2.8 708,357 + IAI47_03395 0.63 -0.1 708,357 + IAI47_03395 0.63 +0.7 708,357 + IAI47_03395 0.63 +0.6 708,357 + IAI47_03395 0.63 -1.4 708,358 - IAI47_03395 0.63 +0.3 708,358 - IAI47_03395 0.63 -0.7 708,358 - IAI47_03395 0.63 -0.2 708,358 - IAI47_03395 0.63 -2.6 708,393 + IAI47_03395 0.68 +1.0 708,393 + IAI47_03395 0.68 +0.3 708,393 + IAI47_03395 0.68 -0.0 708,393 + IAI47_03395 0.68 +0.6 708,394 - IAI47_03395 0.68 +0.1 708,394 - IAI47_03395 0.68 -1.9 708,394 - IAI47_03395 0.68 +1.3 708,397 + IAI47_03395 0.68 -0.6 708,397 + IAI47_03395 0.68 -0.3 708,397 + IAI47_03395 0.68 +3.0 708,398 - IAI47_03395 0.68 -0.0 708,398 - IAI47_03395 0.68 -1.7 708,398 - IAI47_03395 0.68 +2.1 708,398 - IAI47_03395 0.68 +0.3 708,398 - IAI47_03395 0.68 +0.7 708,398 - IAI47_03395 0.68 -1.4 708,398 - IAI47_03395 0.68 +1.9 708,398 - IAI47_03395 0.68 +0.4 708,477 + IAI47_03395 0.78 +0.5 708,646 - +0.1 708,646 - -1.9 708,697 + +0.1 708,697 + -0.6 708,703 + +1.5 708,703 + -0.2 708,723 + -0.7 708,723 + -0.6 708,723 + -2.2 708,724 - -1.5 708,724 - -1.7 708,724 - -2.3 708,724 - -1.7 708,724 - +0.6 708,725 + -1.6 708,725 + -1.7 708,725 + +1.8 708,725 + -0.8 708,725 + -1.6 708,725 + +0.6 708,725 + +0.3 708,725 + -0.6 708,725 + +0.8 708,725 + -0.8 708,725 + -1.9 708,725 + +0.1 708,725 + -0.9 708,725 + -3.1 708,725 + -0.8 708,725 + -2.3 708,725 + +0.9 708,725 + +0.2 708,725 + -0.6 708,725 + -1.8 708,725 + -2.7 708,725 + +0.3 708,725 + -0.9 708,725 + +0.2 708,725 + +1.8 708,725 + -0.9 708,725 + -1.6 708,725 + +0.3 708,725 + -0.1 708,726 - +1.1 708,726 - -0.5 708,726 - -2.9 708,726 - -0.5 708,726 - +1.9 708,726 - -1.8 708,726 - +0.4 708,726 - +0.9 708,726 - +0.1 708,726 - -0.7 708,726 - +0.8 708,726 - -0.0 708,726 - -0.3 708,726 - -2.0 708,726 - -2.2 708,745 - -1.2 708,745 - +0.2 708,745 - -0.2 708,818 + -1.8 708,818 + +0.7 708,818 + +0.6 708,819 - -0.7 708,819 - +0.6 708,819 - +4.6 708,843 - +0.3 709,007 + IAI47_03400 0.14 -1.5 709,007 + IAI47_03400 0.14 -1.5 709,040 + IAI47_03400 0.18 -3.4 709,040 + IAI47_03400 0.18 -0.5 709,040 + IAI47_03400 0.18 +2.5 709,040 + IAI47_03400 0.18 -0.3 709,040 + IAI47_03400 0.18 -1.7 709,041 - IAI47_03400 0.18 -1.4 709,041 - IAI47_03400 0.18 -1.3 709,041 - IAI47_03400 0.18 -2.1 709,041 - IAI47_03400 0.18 -0.5 709,041 - IAI47_03400 0.18 -1.1 709,041 - IAI47_03400 0.18 +1.3 709,044 + IAI47_03400 0.18 -1.2 709,045 - IAI47_03400 0.19 +3.5 709,056 - IAI47_03400 0.20 -0.8 709,071 - IAI47_03400 0.22 -2.5 709,185 + IAI47_03400 0.37 +0.5 709,185 + IAI47_03400 0.37 -1.6 709,274 + IAI47_03400 0.48 +0.2 709,412 + IAI47_03400 0.66 -1.1 709,431 - IAI47_03400 0.68 -1.5 709,516 + IAI47_03400 0.79 -0.3 709,516 + IAI47_03400 0.79 -1.1 709,517 - IAI47_03400 0.79 -2.0 709,520 + IAI47_03400 0.79 -1.9 709,520 + IAI47_03400 0.79 +1.9 709,542 + IAI47_03400 0.82 +0.0 709,542 + IAI47_03400 0.82 +0.8 709,543 - IAI47_03400 0.82 +0.4 709,543 - IAI47_03400 0.82 -0.8 709,562 + IAI47_03400 0.85 -0.4 709,562 + IAI47_03400 0.85 +1.4 709,562 + IAI47_03400 0.85 -1.2 709,562 + IAI47_03400 0.85 +0.2 709,562 + IAI47_03400 0.85 -1.6 709,563 - IAI47_03400 0.85 +0.5 709,563 - IAI47_03400 0.85 -1.4 709,563 - IAI47_03400 0.85 -2.6 709,634 + -0.3 709,634 + -1.8 709,634 + +0.1 709,634 + +2.1 709,635 - -0.9 709,674 + -0.9 709,674 + -2.8 709,738 - -0.2 709,738 - -1.2 709,761 + +1.4 709,819 - -2.0 709,833 + -1.7 709,833 + +0.6 709,834 - +1.4 709,879 + IAI47_03405 0.10 -2.5 709,879 + IAI47_03405 0.10 -0.6 709,879 + IAI47_03405 0.10 +1.5 709,880 - IAI47_03405 0.10 -0.2 709,880 - IAI47_03405 0.10 -1.0 709,880 - IAI47_03405 0.10 +1.9 709,880 - IAI47_03405 0.10 +1.3 709,890 + IAI47_03405 0.11 -0.7 709,890 + IAI47_03405 0.11 -1.1 709,891 - IAI47_03405 0.11 +0.5 709,950 + IAI47_03405 0.16 +0.1 709,989 + IAI47_03405 0.19 +0.2 710,018 + IAI47_03405 0.21 +0.0 710,018 + IAI47_03405 0.21 +0.0 710,018 + IAI47_03405 0.21 -0.6 710,018 + IAI47_03405 0.21 -1.4 710,018 + IAI47_03405 0.21 +2.1 710,019 - IAI47_03405 0.21 -1.8 710,019 - IAI47_03405 0.21 -2.0 710,033 + IAI47_03405 0.22 +2.2 710,033 + IAI47_03405 0.22 -0.7 710,033 + IAI47_03405 0.22 -1.8 710,033 + IAI47_03405 0.22 -1.4 710,034 - IAI47_03405 0.22 -1.3 710,034 - IAI47_03405 0.22 -0.4 710,062 + IAI47_03405 0.24 -0.4 710,062 + IAI47_03405 0.24 +2.7 710,063 - IAI47_03405 0.24 -1.1 710,142 + IAI47_03405 0.30 +0.7 710,142 + IAI47_03405 0.30 -1.0 710,143 - IAI47_03405 0.30 +0.2 710,143 - IAI47_03405 0.30 -0.5 710,179 - IAI47_03405 0.33 +1.8 710,242 + IAI47_03405 0.38 +0.7 710,242 + IAI47_03405 0.38 -1.3 710,243 - IAI47_03405 0.38 +0.4 710,370 + IAI47_03405 0.47 -0.0 710,371 - IAI47_03405 0.47 +0.1 710,380 + IAI47_03405 0.48 -0.1 710,380 + IAI47_03405 0.48 -2.0 710,380 + IAI47_03405 0.48 +0.1 710,380 + IAI47_03405 0.48 +1.3 710,381 - IAI47_03405 0.48 +1.7 710,381 - IAI47_03405 0.48 +0.1 710,381 - IAI47_03405 0.48 +0.6 710,381 - IAI47_03405 0.48 +1.1 710,381 - IAI47_03405 0.48 -2.3 710,381 - IAI47_03405 0.48 +2.3 710,381 - IAI47_03405 0.48 +2.8 710,381 - IAI47_03405 0.48 +0.7 710,381 - IAI47_03405 0.48 +0.3 710,381 - IAI47_03405 0.48 -0.4 710,381 - IAI47_03405 0.48 -1.2 710,381 - IAI47_03405 0.48 -1.0 710,381 - IAI47_03405 0.48 +0.1
Or see this region's nucleotide sequence