Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02720 and IAI47_02725 are separated by 2 nucleotides IAI47_02725 and IAI47_02730 are separated by 59 nucleotides IAI47_02730 and IAI47_02735 are separated by 100 nucleotides
IAI47_02720: IAI47_02720 - translocation/assembly module TamB, at 562,794 to 566,561
_02720
IAI47_02725: IAI47_02725 - gamma-glutamylcyclotransferase, at 566,564 to 566,917
_02725
IAI47_02730: IAI47_02730 - inorganic diphosphatase, at 566,977 to 567,507
_02730
IAI47_02735: IAI47_02735 - DUF441 domain-containing protein, at 567,608 to 568,057
_02735
Position (kb) 566
567 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 565.605 kb on - strand, within IAI47_02720 at 565.605 kb on - strand, within IAI47_02720 at 565.694 kb on - strand, within IAI47_02720 at 565.694 kb on - strand, within IAI47_02720 at 565.718 kb on + strand, within IAI47_02720 at 565.757 kb on + strand, within IAI47_02720 at 565.757 kb on + strand, within IAI47_02720 at 565.758 kb on - strand, within IAI47_02720 at 565.758 kb on - strand, within IAI47_02720 at 565.817 kb on + strand, within IAI47_02720 at 565.818 kb on - strand, within IAI47_02720 at 565.862 kb on + strand, within IAI47_02720 at 565.863 kb on - strand, within IAI47_02720 at 565.868 kb on + strand, within IAI47_02720 at 565.868 kb on + strand, within IAI47_02720 at 565.868 kb on + strand, within IAI47_02720 at 565.869 kb on - strand, within IAI47_02720 at 565.869 kb on - strand, within IAI47_02720 at 565.869 kb on - strand, within IAI47_02720 at 565.958 kb on + strand, within IAI47_02720 at 565.958 kb on + strand, within IAI47_02720 at 565.958 kb on + strand, within IAI47_02720 at 565.959 kb on - strand, within IAI47_02720 at 565.959 kb on - strand, within IAI47_02720 at 565.975 kb on + strand, within IAI47_02720 at 565.975 kb on + strand, within IAI47_02720 at 565.976 kb on - strand, within IAI47_02720 at 565.976 kb on - strand, within IAI47_02720 at 565.976 kb on - strand, within IAI47_02720 at 566.017 kb on - strand, within IAI47_02720 at 566.017 kb on - strand, within IAI47_02720 at 566.017 kb on - strand, within IAI47_02720 at 566.017 kb on - strand, within IAI47_02720 at 566.079 kb on + strand, within IAI47_02720 at 566.079 kb on + strand, within IAI47_02720 at 566.079 kb on + strand, within IAI47_02720 at 566.079 kb on + strand, within IAI47_02720 at 566.079 kb on + strand, within IAI47_02720 at 566.079 kb on + strand, within IAI47_02720 at 566.079 kb on + strand, within IAI47_02720 at 566.079 kb on + strand, within IAI47_02720 at 566.080 kb on - strand, within IAI47_02720 at 566.080 kb on - strand, within IAI47_02720 at 566.080 kb on - strand, within IAI47_02720 at 566.080 kb on - strand, within IAI47_02720 at 566.080 kb on - strand, within IAI47_02720 at 566.102 kb on + strand, within IAI47_02720 at 566.168 kb on + strand, within IAI47_02720 at 566.169 kb on - strand, within IAI47_02720 at 566.169 kb on - strand, within IAI47_02720 at 566.221 kb on - strand at 566.242 kb on + strand at 566.261 kb on + strand at 566.269 kb on + strand at 566.269 kb on + strand at 566.270 kb on - strand at 566.321 kb on + strand at 566.363 kb on + strand at 566.363 kb on + strand at 566.363 kb on + strand at 566.364 kb on - strand at 566.406 kb on + strand at 566.407 kb on - strand at 566.407 kb on - strand at 566.428 kb on + strand at 566.429 kb on - strand at 566.433 kb on + strand at 566.433 kb on + strand at 566.433 kb on + strand at 566.434 kb on - strand at 566.434 kb on - strand at 566.446 kb on + strand at 566.447 kb on - strand at 566.447 kb on - strand at 566.492 kb on + strand at 566.493 kb on - strand at 566.493 kb on - strand at 566.493 kb on - strand at 566.493 kb on - strand at 566.493 kb on - strand at 566.499 kb on + strand at 566.499 kb on + strand at 566.500 kb on - strand at 566.500 kb on - strand at 566.545 kb on - strand at 566.545 kb on - strand at 566.545 kb on - strand at 566.545 kb on - strand at 566.560 kb on - strand at 566.571 kb on + strand at 566.572 kb on - strand at 566.572 kb on - strand at 566.580 kb on - strand at 566.589 kb on + strand at 566.590 kb on - strand at 566.669 kb on + strand, within IAI47_02725 at 566.669 kb on + strand, within IAI47_02725 at 566.669 kb on + strand, within IAI47_02725 at 566.669 kb on + strand, within IAI47_02725 at 566.669 kb on + strand, within IAI47_02725 at 566.669 kb on + strand, within IAI47_02725 at 566.670 kb on - strand, within IAI47_02725 at 566.670 kb on - strand, within IAI47_02725 at 566.671 kb on + strand, within IAI47_02725 at 566.671 kb on + strand, within IAI47_02725 at 566.672 kb on - strand, within IAI47_02725 at 566.672 kb on - strand, within IAI47_02725 at 566.672 kb on - strand, within IAI47_02725 at 566.672 kb on - strand, within IAI47_02725 at 566.695 kb on + strand, within IAI47_02725 at 566.696 kb on - strand, within IAI47_02725 at 566.697 kb on + strand, within IAI47_02725 at 566.697 kb on + strand, within IAI47_02725 at 566.698 kb on - strand, within IAI47_02725 at 566.715 kb on + strand, within IAI47_02725 at 566.715 kb on + strand, within IAI47_02725 at 566.715 kb on + strand, within IAI47_02725 at 566.716 kb on - strand, within IAI47_02725 at 566.716 kb on - strand, within IAI47_02725 at 566.716 kb on - strand, within IAI47_02725 at 566.729 kb on + strand, within IAI47_02725 at 566.729 kb on + strand, within IAI47_02725 at 566.730 kb on - strand, within IAI47_02725 at 566.730 kb on - strand, within IAI47_02725 at 566.790 kb on - strand, within IAI47_02725 at 566.835 kb on - strand, within IAI47_02725 at 566.840 kb on + strand, within IAI47_02725 at 566.840 kb on + strand, within IAI47_02725 at 566.841 kb on - strand, within IAI47_02725 at 566.872 kb on + strand, within IAI47_02725 at 566.872 kb on + strand, within IAI47_02725 at 566.872 kb on + strand, within IAI47_02725 at 566.872 kb on + strand, within IAI47_02725 at 566.872 kb on + strand, within IAI47_02725 at 566.889 kb on + strand at 566.890 kb on - strand at 566.890 kb on - strand at 566.959 kb on + strand at 566.960 kb on - strand at 566.979 kb on - strand at 567.546 kb on - strand at 567.546 kb on - strand at 567.546 kb on - strand at 567.549 kb on - strand at 567.549 kb on - strand at 567.549 kb on - strand at 567.549 kb on - strand at 567.549 kb on - strand at 567.549 kb on - strand at 567.551 kb on - strand at 567.551 kb on - strand at 567.570 kb on + strand at 567.570 kb on + strand at 567.570 kb on + strand at 567.570 kb on + strand at 567.570 kb on + strand at 567.570 kb on + strand at 567.570 kb on + strand at 567.570 kb on + strand at 567.571 kb on - strand at 567.571 kb on - strand at 567.571 kb on - strand at 567.571 kb on - strand at 567.571 kb on - strand at 567.571 kb on - strand at 567.571 kb on - strand at 567.571 kb on - strand at 567.613 kb on + strand at 567.613 kb on + strand at 567.613 kb on + strand at 567.613 kb on + strand at 567.613 kb on + strand at 567.613 kb on + strand at 567.613 kb on + strand at 567.613 kb on + strand at 567.613 kb on + strand at 567.613 kb on + strand at 567.614 kb on - strand at 567.614 kb on - strand at 567.614 kb on - strand at 567.614 kb on - strand at 567.614 kb on - strand at 567.614 kb on - strand at 567.614 kb on - strand at 567.614 kb on - strand at 567.614 kb on - strand at 567.614 kb on - strand at 567.614 kb on - strand at 567.614 kb on - strand at 567.614 kb on - strand at 567.659 kb on + strand, within IAI47_02735 at 567.690 kb on - strand, within IAI47_02735 at 567.690 kb on - strand, within IAI47_02735 at 567.720 kb on - strand, within IAI47_02735 at 567.720 kb on - strand, within IAI47_02735 at 567.731 kb on + strand, within IAI47_02735 at 567.731 kb on + strand, within IAI47_02735 at 567.731 kb on + strand, within IAI47_02735 at 567.731 kb on + strand, within IAI47_02735 at 567.731 kb on + strand, within IAI47_02735 at 567.731 kb on + strand, within IAI47_02735 at 567.731 kb on + strand, within IAI47_02735 at 567.731 kb on + strand, within IAI47_02735 at 567.731 kb on + strand, within IAI47_02735 at 567.731 kb on + strand, within IAI47_02735 at 567.731 kb on + strand, within IAI47_02735 at 567.732 kb on - strand, within IAI47_02735 at 567.732 kb on - strand, within IAI47_02735 at 567.732 kb on - strand, within IAI47_02735 at 567.732 kb on - strand, within IAI47_02735 at 567.732 kb on - strand, within IAI47_02735 at 567.732 kb on - strand, within IAI47_02735 at 567.732 kb on - strand, within IAI47_02735 at 567.732 kb on - strand, within IAI47_02735 at 567.732 kb on - strand, within IAI47_02735 at 567.732 kb on - strand, within IAI47_02735 at 567.880 kb on + strand, within IAI47_02735 at 567.880 kb on + strand, within IAI47_02735 at 567.881 kb on - strand, within IAI47_02735 at 567.886 kb on + strand, within IAI47_02735 at 567.886 kb on + strand, within IAI47_02735 at 567.886 kb on + strand, within IAI47_02735 at 567.886 kb on + strand, within IAI47_02735 at 567.886 kb on + strand, within IAI47_02735 at 567.887 kb on - strand, within IAI47_02735 at 567.887 kb on - strand, within IAI47_02735 at 567.887 kb on - strand, within IAI47_02735 at 567.896 kb on + strand, within IAI47_02735 at 567.896 kb on + strand, within IAI47_02735 at 567.896 kb on + strand, within IAI47_02735 at 567.896 kb on + strand, within IAI47_02735 at 567.897 kb on - strand, within IAI47_02735 at 567.897 kb on - strand, within IAI47_02735 at 567.901 kb on + strand, within IAI47_02735 at 567.901 kb on + strand, within IAI47_02735 at 567.901 kb on + strand, within IAI47_02735 at 567.902 kb on - strand, within IAI47_02735 at 567.902 kb on - strand, within IAI47_02735 at 567.902 kb on - strand, within IAI47_02735 at 567.902 kb on - strand, within IAI47_02735 at 567.902 kb on - strand, within IAI47_02735 at 567.902 kb on - strand, within IAI47_02735 at 567.902 kb on - strand, within IAI47_02735
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 565,605 - IAI47_02720 0.75 +1.4 565,605 - IAI47_02720 0.75 -1.7 565,694 - IAI47_02720 0.77 +1.2 565,694 - IAI47_02720 0.77 +0.1 565,718 + IAI47_02720 0.78 -0.2 565,757 + IAI47_02720 0.79 +1.2 565,757 + IAI47_02720 0.79 -0.6 565,758 - IAI47_02720 0.79 +0.3 565,758 - IAI47_02720 0.79 +0.9 565,817 + IAI47_02720 0.80 +2.2 565,818 - IAI47_02720 0.80 +2.2 565,862 + IAI47_02720 0.81 -0.6 565,863 - IAI47_02720 0.81 -0.8 565,868 + IAI47_02720 0.82 +1.8 565,868 + IAI47_02720 0.82 -0.3 565,868 + IAI47_02720 0.82 -0.3 565,869 - IAI47_02720 0.82 -0.5 565,869 - IAI47_02720 0.82 -1.5 565,869 - IAI47_02720 0.82 -2.1 565,958 + IAI47_02720 0.84 +0.7 565,958 + IAI47_02720 0.84 +1.3 565,958 + IAI47_02720 0.84 -2.4 565,959 - IAI47_02720 0.84 +1.4 565,959 - IAI47_02720 0.84 -0.8 565,975 + IAI47_02720 0.84 +1.1 565,975 + IAI47_02720 0.84 -1.6 565,976 - IAI47_02720 0.84 +1.0 565,976 - IAI47_02720 0.84 -1.8 565,976 - IAI47_02720 0.84 -1.0 566,017 - IAI47_02720 0.86 +0.3 566,017 - IAI47_02720 0.86 -0.7 566,017 - IAI47_02720 0.86 +0.4 566,017 - IAI47_02720 0.86 +1.6 566,079 + IAI47_02720 0.87 +2.4 566,079 + IAI47_02720 0.87 -1.3 566,079 + IAI47_02720 0.87 +1.4 566,079 + IAI47_02720 0.87 +1.4 566,079 + IAI47_02720 0.87 -0.3 566,079 + IAI47_02720 0.87 -0.6 566,079 + IAI47_02720 0.87 +1.5 566,079 + IAI47_02720 0.87 -0.0 566,080 - IAI47_02720 0.87 +0.8 566,080 - IAI47_02720 0.87 -2.4 566,080 - IAI47_02720 0.87 +1.2 566,080 - IAI47_02720 0.87 +1.6 566,080 - IAI47_02720 0.87 +1.7 566,102 + IAI47_02720 0.88 +1.3 566,168 + IAI47_02720 0.90 +1.7 566,169 - IAI47_02720 0.90 +1.5 566,169 - IAI47_02720 0.90 +0.4 566,221 - -0.1 566,242 + +0.1 566,261 + -1.0 566,269 + +0.9 566,269 + +1.0 566,270 - -0.5 566,321 + +1.0 566,363 + +1.1 566,363 + +3.1 566,363 + +2.4 566,364 - +0.7 566,406 + +2.2 566,407 - +2.9 566,407 - +0.9 566,428 + +2.7 566,429 - +2.5 566,433 + +1.4 566,433 + +0.7 566,433 + +0.4 566,434 - -2.0 566,434 - +1.7 566,446 + +1.3 566,447 - -1.8 566,447 - +1.0 566,492 + +0.2 566,493 - +2.3 566,493 - +1.8 566,493 - +2.0 566,493 - +2.4 566,493 - +2.3 566,499 + +0.2 566,499 + -2.2 566,500 - +2.4 566,500 - +0.7 566,545 - +1.2 566,545 - +2.7 566,545 - -0.8 566,545 - +1.4 566,560 - +1.8 566,571 + +2.8 566,572 - -0.0 566,572 - +2.3 566,580 - +1.1 566,589 + -1.0 566,590 - +2.3 566,669 + IAI47_02725 0.30 +1.3 566,669 + IAI47_02725 0.30 +2.2 566,669 + IAI47_02725 0.30 +0.8 566,669 + IAI47_02725 0.30 +2.0 566,669 + IAI47_02725 0.30 +0.4 566,669 + IAI47_02725 0.30 +1.4 566,670 - IAI47_02725 0.30 +1.9 566,670 - IAI47_02725 0.30 +1.3 566,671 + IAI47_02725 0.30 +1.3 566,671 + IAI47_02725 0.30 -0.5 566,672 - IAI47_02725 0.31 +0.0 566,672 - IAI47_02725 0.31 +2.1 566,672 - IAI47_02725 0.31 +1.0 566,672 - IAI47_02725 0.31 +2.5 566,695 + IAI47_02725 0.37 +2.4 566,696 - IAI47_02725 0.37 +1.6 566,697 + IAI47_02725 0.38 +1.6 566,697 + IAI47_02725 0.38 +1.9 566,698 - IAI47_02725 0.38 +1.6 566,715 + IAI47_02725 0.43 +0.7 566,715 + IAI47_02725 0.43 +3.2 566,715 + IAI47_02725 0.43 +2.1 566,716 - IAI47_02725 0.43 +2.6 566,716 - IAI47_02725 0.43 +2.0 566,716 - IAI47_02725 0.43 +0.1 566,729 + IAI47_02725 0.47 +0.2 566,729 + IAI47_02725 0.47 +2.1 566,730 - IAI47_02725 0.47 -1.3 566,730 - IAI47_02725 0.47 +0.7 566,790 - IAI47_02725 0.64 +2.2 566,835 - IAI47_02725 0.77 +2.0 566,840 + IAI47_02725 0.78 +2.7 566,840 + IAI47_02725 0.78 +2.0 566,841 - IAI47_02725 0.78 +2.7 566,872 + IAI47_02725 0.87 -0.9 566,872 + IAI47_02725 0.87 +1.7 566,872 + IAI47_02725 0.87 +1.5 566,872 + IAI47_02725 0.87 +0.5 566,872 + IAI47_02725 0.87 +1.5 566,889 + +0.2 566,890 - +1.0 566,890 - +1.5 566,959 + -0.1 566,960 - +0.8 566,979 - +1.8 567,546 - +2.1 567,546 - -0.0 567,546 - -0.9 567,549 - +0.5 567,549 - +0.8 567,549 - +0.2 567,549 - +0.9 567,549 - -0.0 567,549 - +1.0 567,551 - +0.2 567,551 - +2.1 567,570 + +1.5 567,570 + -0.6 567,570 + -0.3 567,570 + +4.3 567,570 + -2.3 567,570 + -0.1 567,570 + -1.5 567,570 + +0.6 567,571 - +0.9 567,571 - -1.2 567,571 - -0.4 567,571 - +0.8 567,571 - +1.1 567,571 - -0.9 567,571 - +1.2 567,571 - +0.1 567,613 + +2.0 567,613 + -2.9 567,613 + +1.1 567,613 + -0.3 567,613 + +0.4 567,613 + -0.2 567,613 + -1.3 567,613 + -0.8 567,613 + +1.2 567,613 + +0.6 567,614 - -0.8 567,614 - -0.2 567,614 - -1.2 567,614 - +1.0 567,614 - +1.7 567,614 - -0.1 567,614 - -0.5 567,614 - +0.9 567,614 - -0.1 567,614 - -0.9 567,614 - +0.7 567,614 - -0.6 567,614 - -1.3 567,659 + IAI47_02735 0.11 +0.4 567,690 - IAI47_02735 0.18 +0.1 567,690 - IAI47_02735 0.18 +0.8 567,720 - IAI47_02735 0.25 +0.0 567,720 - IAI47_02735 0.25 -0.4 567,731 + IAI47_02735 0.27 +1.3 567,731 + IAI47_02735 0.27 -2.7 567,731 + IAI47_02735 0.27 +1.0 567,731 + IAI47_02735 0.27 -0.7 567,731 + IAI47_02735 0.27 -1.5 567,731 + IAI47_02735 0.27 +0.5 567,731 + IAI47_02735 0.27 -0.4 567,731 + IAI47_02735 0.27 -0.5 567,731 + IAI47_02735 0.27 -0.4 567,731 + IAI47_02735 0.27 -2.6 567,731 + IAI47_02735 0.27 +0.5 567,732 - IAI47_02735 0.28 -2.6 567,732 - IAI47_02735 0.28 -0.4 567,732 - IAI47_02735 0.28 -0.1 567,732 - IAI47_02735 0.28 -1.1 567,732 - IAI47_02735 0.28 +1.7 567,732 - IAI47_02735 0.28 +0.7 567,732 - IAI47_02735 0.28 -0.1 567,732 - IAI47_02735 0.28 +0.7 567,732 - IAI47_02735 0.28 +0.7 567,732 - IAI47_02735 0.28 -3.0 567,880 + IAI47_02735 0.60 -2.7 567,880 + IAI47_02735 0.60 -1.8 567,881 - IAI47_02735 0.61 -0.1 567,886 + IAI47_02735 0.62 -0.9 567,886 + IAI47_02735 0.62 -2.5 567,886 + IAI47_02735 0.62 +0.1 567,886 + IAI47_02735 0.62 +1.3 567,886 + IAI47_02735 0.62 +1.9 567,887 - IAI47_02735 0.62 -1.4 567,887 - IAI47_02735 0.62 -1.8 567,887 - IAI47_02735 0.62 +0.5 567,896 + IAI47_02735 0.64 -0.7 567,896 + IAI47_02735 0.64 +0.7 567,896 + IAI47_02735 0.64 +1.4 567,896 + IAI47_02735 0.64 +0.5 567,897 - IAI47_02735 0.64 +0.6 567,897 - IAI47_02735 0.64 -0.1 567,901 + IAI47_02735 0.65 +4.5 567,901 + IAI47_02735 0.65 -0.4 567,901 + IAI47_02735 0.65 +0.2 567,902 - IAI47_02735 0.65 +1.7 567,902 - IAI47_02735 0.65 +0.8 567,902 - IAI47_02735 0.65 -0.1 567,902 - IAI47_02735 0.65 -1.5 567,902 - IAI47_02735 0.65 +0.1 567,902 - IAI47_02735 0.65 +0.8 567,902 - IAI47_02735 0.65 +0.5
Or see this region's nucleotide sequence