Strain Fitness in Pantoea sp. MT58 around IAI47_12000

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,541,730	+		IAI47_11995	0.23	-0.6
2,541,731	-		IAI47_11995	0.24	+0.1
2,541,731	-		IAI47_11995	0.24	-1.0
2,541,731	-		IAI47_11995	0.24	-0.1
2,541,731	-		IAI47_11995	0.24	-2.2
2,541,731	-		IAI47_11995	0.24	+2.0
2,541,826	+		IAI47_11995	0.33	-0.7
2,541,865	+		IAI47_11995	0.36	-0.6
2,541,865	+		IAI47_11995	0.36	-0.8
2,541,866	-		IAI47_11995	0.37	-0.1
2,541,866	-		IAI47_11995	0.37	+0.0
2,541,866	-		IAI47_11995	0.37	-1.3
2,541,866	-		IAI47_11995	0.37	+1.0
2,541,984	-		IAI47_11995	0.48	-0.9
2,542,025	+		IAI47_11995	0.52	-0.0
2,542,026	-		IAI47_11995	0.52	+0.5
2,542,065	-		IAI47_11995	0.56	-0.1
2,542,136	+		IAI47_11995	0.62	+0.5
2,542,136	+		IAI47_11995	0.62	+0.0
2,542,136	+		IAI47_11995	0.62	-2.6
2,542,136	+		IAI47_11995	0.62	-2.5
2,542,286	+		IAI47_11995	0.77	-0.1
2,542,287	-		IAI47_11995	0.77	+0.9
2,542,480	+				-0.4
2,542,481	-				+0.4
2,542,527	-				+0.3
2,542,527	-				+0.3
2,542,546	+				-1.3
2,542,546	+				-0.7
2,542,547	-				+1.0
2,542,547	-				+0.6
2,542,559	-				-0.1
2,542,568	-				-0.0
2,542,568	-				-0.6
2,542,602	+				-0.2
2,542,603	-				+1.2
2,542,603	-				-0.7
2,542,603	-				+0.1
2,542,603	-				-0.7
2,542,603	-				-0.4
2,542,729	+		IAI47_12000	0.21	-0.0
2,542,729	+		IAI47_12000	0.21	-0.4
2,542,729	+		IAI47_12000	0.21	-0.7
2,542,729	+		IAI47_12000	0.21	+1.5
2,542,730	-		IAI47_12000	0.21	+2.6
2,542,730	-		IAI47_12000	0.21	-0.0
2,542,814	-		IAI47_12000	0.32	+0.1
2,542,851	+		IAI47_12000	0.36	+0.9
2,542,851	+		IAI47_12000	0.36	+0.4
2,542,851	+		IAI47_12000	0.36	+1.9
2,542,851	+		IAI47_12000	0.36	+1.6
2,542,851	+		IAI47_12000	0.36	+1.0
2,542,851	+		IAI47_12000	0.36	+0.4
2,542,852	-		IAI47_12000	0.37	+1.5
2,542,852	-		IAI47_12000	0.37	+0.8
2,542,852	-		IAI47_12000	0.37	-0.0
2,542,852	-		IAI47_12000	0.37	-0.4
2,542,852	-		IAI47_12000	0.37	-0.2
2,542,852	-		IAI47_12000	0.37	+1.4
2,542,852	-		IAI47_12000	0.37	-1.4
2,542,852	-		IAI47_12000	0.37	+0.9
2,542,852	-		IAI47_12000	0.37	+0.1
2,542,967	+		IAI47_12000	0.51	+0.6
2,542,967	+		IAI47_12000	0.51	+0.6
2,542,967	+		IAI47_12000	0.51	+1.1
2,542,967	+		IAI47_12000	0.51	+1.0
2,542,967	+		IAI47_12000	0.51	-0.2
2,542,968	-		IAI47_12000	0.51	+2.6
2,542,968	-		IAI47_12000	0.51	+1.7
2,542,978	+		IAI47_12000	0.53	+0.3
2,542,989	+		IAI47_12000	0.54	+1.5
2,542,990	-		IAI47_12000	0.54	-0.8
2,542,990	-		IAI47_12000	0.54	+0.3
2,543,121	-		IAI47_12000	0.71	-0.8
2,543,121	-		IAI47_12000	0.71	+1.3
2,543,142	+		IAI47_12000	0.74	-0.2
2,543,142	+		IAI47_12000	0.74	-0.2
2,543,220	-		IAI47_12000	0.84	+0.3
2,543,220	-		IAI47_12000	0.84	+1.4
2,543,247	-		IAI47_12000	0.87	+1.5
2,543,307	-				-0.1
2,543,307	-				+2.6
2,543,366	+				+0.3
2,543,366	+				+0.7
2,543,366	+				+0.2
2,543,367	-				-0.5
2,543,448	+		IAI47_12005	0.14	+0.7
2,543,449	-		IAI47_12005	0.14	+0.3
2,543,467	-		IAI47_12005	0.17	-0.1
2,543,471	+		IAI47_12005	0.18	+0.3
2,543,471	+		IAI47_12005	0.18	+0.0
2,543,472	-		IAI47_12005	0.18	+0.2
2,543,472	-		IAI47_12005	0.18	+0.1
2,543,472	-		IAI47_12005	0.18	-2.4
2,543,472	-		IAI47_12005	0.18	-0.2
2,543,472	-		IAI47_12005	0.18	-0.8
2,543,480	+		IAI47_12005	0.19	+1.4
2,543,480	+		IAI47_12005	0.19	+0.9
2,543,480	+		IAI47_12005	0.19	-0.2
2,543,480	+		IAI47_12005	0.19	+1.7
2,543,480	+		IAI47_12005	0.19	+0.7
2,543,480	+		IAI47_12005	0.19	+1.9
2,543,480	+		IAI47_12005	0.19	+1.1
2,543,481	-		IAI47_12005	0.19	-0.9
2,543,481	-		IAI47_12005	0.19	-1.4
2,543,481	-		IAI47_12005	0.19	-0.9
2,543,481	-		IAI47_12005	0.19	-1.4
2,543,481	-		IAI47_12005	0.19	-0.6
2,543,481	-		IAI47_12005	0.19	-0.4
2,543,481	-		IAI47_12005	0.19	-0.5
2,543,481	-		IAI47_12005	0.19	-0.0
2,543,481	-		IAI47_12005	0.19	-1.5
2,543,518	-		IAI47_12005	0.26	-0.7
2,543,604	+		IAI47_12005	0.40	+1.3
2,543,611	-		IAI47_12005	0.41	+0.4
2,543,613	+		IAI47_12005	0.42	-0.4
2,543,613	+		IAI47_12005	0.42	+1.3
2,543,613	+		IAI47_12005	0.42	+0.1
2,543,613	+		IAI47_12005	0.42	+1.9
2,543,613	+		IAI47_12005	0.42	+1.4
2,543,614	-		IAI47_12005	0.42	-0.2
2,543,728	+		IAI47_12005	0.61	-1.7
2,543,728	+		IAI47_12005	0.61	-1.2
2,543,729	-		IAI47_12005	0.61	+0.7
2,543,729	-		IAI47_12005	0.61	+1.4
2,543,772	+		IAI47_12005	0.68	-0.7
2,543,772	+		IAI47_12005	0.68	-0.6
2,543,772	+		IAI47_12005	0.68	+2.0
2,543,772	+		IAI47_12005	0.68	+0.2
2,543,772	+		IAI47_12005	0.68	+0.6
2,543,941	-				+1.4
2,543,947	-				+0.9
2,543,947	-				-0.9
2,543,956	+				+0.2
2,543,957	-				-2.0
2,543,974	+				+1.1
2,543,980	+				-0.3
2,543,980	+				+0.3
2,543,980	+				+2.6
2,543,980	+				+0.1
2,543,981	-				-2.1
2,543,981	-				+0.4
2,543,986	+				-0.1
2,543,986	+				+1.0
2,543,999	+				+0.8
2,543,999	+				+0.7
2,544,000	-				-1.3
2,544,036	+		IAI47_12010	0.17	+0.7
2,544,036	+		IAI47_12010	0.17	+1.6
2,544,037	-		IAI47_12010	0.17	-0.7
2,544,109	+		IAI47_12010	0.37	+0.1
2,544,110	-		IAI47_12010	0.37	-0.3
2,544,115	+		IAI47_12010	0.38	-0.9
2,544,115	+		IAI47_12010	0.38	+0.2
2,544,118	+		IAI47_12010	0.39	-2.4
2,544,119	-		IAI47_12010	0.40	+1.4
2,544,124	+		IAI47_12010	0.41	+1.8
2,544,124	+		IAI47_12010	0.41	+0.3
2,544,155	+		IAI47_12010	0.49	+2.8
2,544,155	+		IAI47_12010	0.49	+1.8
2,544,156	-		IAI47_12010	0.50	+0.2
2,544,156	-		IAI47_12010	0.50	+0.3
2,544,157	+		IAI47_12010	0.50	-1.3
2,544,157	+		IAI47_12010	0.50	-0.8
2,544,157	+		IAI47_12010	0.50	+0.0
2,544,157	+		IAI47_12010	0.50	-0.9
2,544,157	+		IAI47_12010	0.50	+0.1
2,544,158	-		IAI47_12010	0.50	+1.2
2,544,158	-		IAI47_12010	0.50	-1.0
2,544,158	-		IAI47_12010	0.50	+1.6
2,544,215	+		IAI47_12010	0.66	+1.3
2,544,216	-		IAI47_12010	0.66	+1.0
2,544,216	-		IAI47_12010	0.66	+1.8
2,544,218	+		IAI47_12010	0.66	+2.0
2,544,218	+		IAI47_12010	0.66	-0.5
2,544,219	-		IAI47_12010	0.67	-0.5
2,544,266	+		IAI47_12010	0.79	+0.9
2,544,266	+		IAI47_12010	0.79	+0.7
2,544,266	+		IAI47_12010	0.79	-0.2
2,544,266	+		IAI47_12010	0.79	-1.0
2,544,266	-		IAI47_12010	0.79	+0.1
2,544,267	-		IAI47_12010	0.80	-1.3
2,544,267	-		IAI47_12010	0.80	+1.1
2,544,267	-		IAI47_12010	0.80	+0.7
2,544,267	-		IAI47_12010	0.80	-0.7
2,544,267	-		IAI47_12010	0.80	+0.4
2,544,267	-		IAI47_12010	0.80	+0.9
2,544,282	-		IAI47_12010	0.84	-0.4
2,544,282	-		IAI47_12010	0.84	-0.9
2,544,341	+				-0.4
2,544,341	+				+0.8
2,544,341	+				+1.2
2,544,341	+				-0.2
2,544,342	-				+1.0