Strain Fitness in Pantoea sp. MT58 around IAI47_09345

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_09340 and IAI47_09345 are separated by 187 nucleotidesIAI47_09345 and IAI47_09350 are separated by 5 nucleotides IAI47_09340: IAI47_09340 - DUF1275 domain-containing protein, at 1,973,274 to 1,974,002 _09340 IAI47_09345: IAI47_09345 - LysR family transcriptional regulator, at 1,974,190 to 1,975,086 _09345 IAI47_09350: IAI47_09350 - oxidoreductase, at 1,975,092 to 1,976,204 _09350 Position (kb) 1974 1975 1976Strain fitness (log2 ratio) -2 -1 0 1 2at 1973.243 kb on + strandat 1973.243 kb on + strandat 1973.244 kb on - strandat 1973.244 kb on - strandat 1973.245 kb on + strandat 1973.246 kb on - strandat 1973.303 kb on + strandat 1973.304 kb on - strandat 1973.483 kb on - strand, within IAI47_09340at 1973.486 kb on + strand, within IAI47_09340at 1973.486 kb on + strand, within IAI47_09340at 1973.487 kb on - strand, within IAI47_09340at 1973.519 kb on + strand, within IAI47_09340at 1973.549 kb on + strand, within IAI47_09340at 1973.549 kb on + strand, within IAI47_09340at 1973.549 kb on + strand, within IAI47_09340at 1973.549 kb on + strand, within IAI47_09340at 1973.550 kb on - strand, within IAI47_09340at 1973.550 kb on - strand, within IAI47_09340at 1973.550 kb on - strand, within IAI47_09340at 1973.550 kb on - strand, within IAI47_09340at 1973.553 kb on + strand, within IAI47_09340at 1973.553 kb on + strand, within IAI47_09340at 1973.553 kb on + strand, within IAI47_09340at 1973.553 kb on + strand, within IAI47_09340at 1973.553 kb on + strand, within IAI47_09340at 1973.553 kb on + strand, within IAI47_09340at 1973.554 kb on - strand, within IAI47_09340at 1973.554 kb on - strand, within IAI47_09340at 1973.554 kb on - strand, within IAI47_09340at 1973.554 kb on - strand, within IAI47_09340at 1973.644 kb on + strand, within IAI47_09340at 1973.645 kb on - strand, within IAI47_09340at 1973.690 kb on + strand, within IAI47_09340at 1973.691 kb on - strand, within IAI47_09340at 1973.703 kb on - strand, within IAI47_09340at 1973.717 kb on + strand, within IAI47_09340at 1973.717 kb on + strand, within IAI47_09340at 1973.717 kb on + strand, within IAI47_09340at 1973.717 kb on + strand, within IAI47_09340at 1973.718 kb on - strand, within IAI47_09340at 1973.718 kb on - strand, within IAI47_09340at 1973.718 kb on - strand, within IAI47_09340at 1973.718 kb on - strand, within IAI47_09340at 1973.718 kb on - strand, within IAI47_09340at 1973.718 kb on - strand, within IAI47_09340at 1973.726 kb on + strand, within IAI47_09340at 1973.726 kb on + strand, within IAI47_09340at 1973.727 kb on - strand, within IAI47_09340at 1973.727 kb on - strand, within IAI47_09340at 1973.783 kb on - strand, within IAI47_09340at 1973.789 kb on + strand, within IAI47_09340at 1973.815 kb on + strand, within IAI47_09340at 1973.815 kb on + strand, within IAI47_09340at 1973.815 kb on + strand, within IAI47_09340at 1973.815 kb on + strand, within IAI47_09340at 1973.815 kb on + strand, within IAI47_09340at 1973.816 kb on - strand, within IAI47_09340at 1973.816 kb on - strand, within IAI47_09340at 1973.816 kb on - strand, within IAI47_09340at 1973.816 kb on - strand, within IAI47_09340at 1973.817 kb on + strand, within IAI47_09340at 1973.817 kb on + strand, within IAI47_09340at 1973.818 kb on - strand, within IAI47_09340at 1973.818 kb on - strand, within IAI47_09340at 1973.818 kb on - strand, within IAI47_09340at 1973.836 kb on + strand, within IAI47_09340at 1973.837 kb on - strand, within IAI47_09340at 1973.837 kb on - strand, within IAI47_09340at 1973.902 kb on + strand, within IAI47_09340at 1973.907 kb on + strand, within IAI47_09340at 1973.907 kb on + strand, within IAI47_09340at 1973.938 kb on + strandat 1973.939 kb on - strandat 1974.000 kb on + strandat 1974.000 kb on + strandat 1974.001 kb on - strandat 1974.001 kb on - strandat 1974.001 kb on - strandat 1974.010 kb on + strandat 1974.011 kb on - strandat 1974.011 kb on - strandat 1974.011 kb on - strandat 1974.098 kb on + strandat 1974.098 kb on + strandat 1974.099 kb on - strandat 1974.107 kb on + strandat 1974.107 kb on + strandat 1974.108 kb on - strandat 1974.121 kb on + strandat 1974.121 kb on + strandat 1974.122 kb on - strandat 1974.167 kb on + strandat 1974.182 kb on + strandat 1974.186 kb on + strandat 1974.211 kb on + strandat 1974.212 kb on - strandat 1974.212 kb on - strandat 1974.212 kb on - strandat 1974.216 kb on - strandat 1974.219 kb on + strandat 1974.220 kb on - strandat 1974.345 kb on + strand, within IAI47_09345at 1974.361 kb on - strand, within IAI47_09345at 1974.412 kb on + strand, within IAI47_09345at 1974.413 kb on - strand, within IAI47_09345at 1974.551 kb on - strand, within IAI47_09345at 1974.698 kb on + strand, within IAI47_09345at 1974.698 kb on + strand, within IAI47_09345at 1974.698 kb on + strand, within IAI47_09345at 1974.698 kb on + strand, within IAI47_09345at 1974.699 kb on - strand, within IAI47_09345at 1974.809 kb on - strand, within IAI47_09345at 1974.809 kb on - strand, within IAI47_09345at 1974.816 kb on + strand, within IAI47_09345at 1974.817 kb on - strand, within IAI47_09345at 1974.817 kb on - strand, within IAI47_09345at 1974.817 kb on - strand, within IAI47_09345at 1974.870 kb on + strand, within IAI47_09345at 1974.870 kb on + strand, within IAI47_09345at 1974.870 kb on + strand, within IAI47_09345at 1974.871 kb on - strand, within IAI47_09345at 1974.871 kb on - strand, within IAI47_09345at 1974.871 kb on - strand, within IAI47_09345at 1974.871 kb on - strand, within IAI47_09345at 1974.871 kb on - strand, within IAI47_09345at 1974.873 kb on + strand, within IAI47_09345at 1974.873 kb on + strand, within IAI47_09345at 1974.873 kb on + strand, within IAI47_09345at 1974.873 kb on + strand, within IAI47_09345at 1974.873 kb on + strand, within IAI47_09345at 1974.874 kb on - strand, within IAI47_09345at 1974.874 kb on - strand, within IAI47_09345at 1974.874 kb on - strand, within IAI47_09345at 1974.874 kb on - strand, within IAI47_09345at 1974.975 kb on + strand, within IAI47_09345at 1974.975 kb on + strand, within IAI47_09345at 1974.976 kb on - strand, within IAI47_09345at 1974.976 kb on - strand, within IAI47_09345at 1975.083 kb on - strandat 1975.083 kb on - strandat 1975.084 kb on + strandat 1975.084 kb on + strandat 1975.084 kb on + strandat 1975.084 kb on + strandat 1975.085 kb on - strandat 1975.093 kb on + strandat 1975.093 kb on + strandat 1975.093 kb on + strandat 1975.094 kb on - strandat 1975.140 kb on + strandat 1975.155 kb on + strandat 1975.155 kb on + strandat 1975.155 kb on + strandat 1975.155 kb on + strandat 1975.156 kb on - strandat 1975.156 kb on - strandat 1975.159 kb on - strandat 1975.262 kb on + strand, within IAI47_09350at 1975.262 kb on + strand, within IAI47_09350at 1975.263 kb on - strand, within IAI47_09350at 1975.361 kb on + strand, within IAI47_09350at 1975.388 kb on + strand, within IAI47_09350at 1975.429 kb on + strand, within IAI47_09350at 1975.429 kb on + strand, within IAI47_09350at 1975.429 kb on + strand, within IAI47_09350at 1975.429 kb on + strand, within IAI47_09350at 1975.429 kb on + strand, within IAI47_09350at 1975.430 kb on - strand, within IAI47_09350at 1975.529 kb on - strand, within IAI47_09350at 1975.678 kb on + strand, within IAI47_09350at 1975.769 kb on + strand, within IAI47_09350at 1975.769 kb on + strand, within IAI47_09350at 1975.770 kb on - strand, within IAI47_09350at 1975.770 kb on - strand, within IAI47_09350at 1975.770 kb on - strand, within IAI47_09350at 1975.770 kb on - strand, within IAI47_09350at 1975.801 kb on + strand, within IAI47_09350at 1975.801 kb on + strand, within IAI47_09350at 1975.801 kb on + strand, within IAI47_09350at 1975.801 kb on + strand, within IAI47_09350at 1975.826 kb on + strand, within IAI47_09350at 1975.826 kb on + strand, within IAI47_09350at 1975.827 kb on - strand, within IAI47_09350at 1975.830 kb on - strand, within IAI47_09350at 1975.830 kb on - strand, within IAI47_09350at 1975.866 kb on + strand, within IAI47_09350at 1975.866 kb on + strand, within IAI47_09350at 1975.879 kb on + strand, within IAI47_09350at 1975.879 kb on + strand, within IAI47_09350at 1975.879 kb on + strand, within IAI47_09350at 1975.880 kb on - strand, within IAI47_09350at 1975.887 kb on - strand, within IAI47_09350at 1975.887 kb on - strand, within IAI47_09350at 1975.945 kb on + strand, within IAI47_09350at 1975.946 kb on - strand, within IAI47_09350at 1975.953 kb on + strand, within IAI47_09350at 1975.958 kb on + strand, within IAI47_09350at 1975.958 kb on + strand, within IAI47_09350at 1975.958 kb on + strand, within IAI47_09350at 1975.958 kb on + strand, within IAI47_09350at 1975.959 kb on - strand, within IAI47_09350at 1975.959 kb on - strand, within IAI47_09350at 1975.959 kb on - strand, within IAI47_09350at 1975.959 kb on - strand, within IAI47_09350at 1976.059 kb on - strand, within IAI47_09350at 1976.059 kb on - strand, within IAI47_09350at 1976.060 kb on - strand, within IAI47_09350at 1976.074 kb on + strand, within IAI47_09350at 1976.075 kb on - strand, within IAI47_09350

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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1,973,243 + +1.1
1,973,243 + +0.8
1,973,244 - +0.0
1,973,244 - -0.8
1,973,245 + -0.2
1,973,246 - -0.4
1,973,303 + +2.2
1,973,304 - -0.1
1,973,483 - IAI47_09340 0.29 -0.6
1,973,486 + IAI47_09340 0.29 +0.0
1,973,486 + IAI47_09340 0.29 -0.2
1,973,487 - IAI47_09340 0.29 -0.6
1,973,519 + IAI47_09340 0.34 -0.2
1,973,549 + IAI47_09340 0.38 -2.6
1,973,549 + IAI47_09340 0.38 +0.5
1,973,549 + IAI47_09340 0.38 -0.4
1,973,549 + IAI47_09340 0.38 +0.0
1,973,550 - IAI47_09340 0.38 -0.8
1,973,550 - IAI47_09340 0.38 +1.3
1,973,550 - IAI47_09340 0.38 +0.4
1,973,550 - IAI47_09340 0.38 +0.0
1,973,553 + IAI47_09340 0.38 +1.5
1,973,553 + IAI47_09340 0.38 +0.3
1,973,553 + IAI47_09340 0.38 -0.4
1,973,553 + IAI47_09340 0.38 -1.8
1,973,553 + IAI47_09340 0.38 -0.9
1,973,553 + IAI47_09340 0.38 -0.2
1,973,554 - IAI47_09340 0.38 +0.6
1,973,554 - IAI47_09340 0.38 +0.7
1,973,554 - IAI47_09340 0.38 -1.6
1,973,554 - IAI47_09340 0.38 +0.1
1,973,644 + IAI47_09340 0.51 +0.8
1,973,645 - IAI47_09340 0.51 +0.1
1,973,690 + IAI47_09340 0.57 -1.3
1,973,691 - IAI47_09340 0.57 -0.2
1,973,703 - IAI47_09340 0.59 +0.4
1,973,717 + IAI47_09340 0.61 +0.4
1,973,717 + IAI47_09340 0.61 +0.9
1,973,717 + IAI47_09340 0.61 -1.1
1,973,717 + IAI47_09340 0.61 -0.5
1,973,718 - IAI47_09340 0.61 +1.7
1,973,718 - IAI47_09340 0.61 -1.4
1,973,718 - IAI47_09340 0.61 -0.0
1,973,718 - IAI47_09340 0.61 -0.5
1,973,718 - IAI47_09340 0.61 -0.1
1,973,718 - IAI47_09340 0.61 +1.7
1,973,726 + IAI47_09340 0.62 -0.4
1,973,726 + IAI47_09340 0.62 +1.3
1,973,727 - IAI47_09340 0.62 -0.3
1,973,727 - IAI47_09340 0.62 -1.4
1,973,783 - IAI47_09340 0.70 -0.4
1,973,789 + IAI47_09340 0.71 +2.0
1,973,815 + IAI47_09340 0.74 -0.3
1,973,815 + IAI47_09340 0.74 +1.1
1,973,815 + IAI47_09340 0.74 -0.5
1,973,815 + IAI47_09340 0.74 -0.5
1,973,815 + IAI47_09340 0.74 +0.0
1,973,816 - IAI47_09340 0.74 +0.3
1,973,816 - IAI47_09340 0.74 +2.3
1,973,816 - IAI47_09340 0.74 -0.1
1,973,816 - IAI47_09340 0.74 +0.1
1,973,817 + IAI47_09340 0.74 -0.2
1,973,817 + IAI47_09340 0.74 +0.1
1,973,818 - IAI47_09340 0.75 +0.5
1,973,818 - IAI47_09340 0.75 -1.4
1,973,818 - IAI47_09340 0.75 +0.3
1,973,836 + IAI47_09340 0.77 +1.4
1,973,837 - IAI47_09340 0.77 -0.4
1,973,837 - IAI47_09340 0.77 +0.1
1,973,902 + IAI47_09340 0.86 -1.2
1,973,907 + IAI47_09340 0.87 +0.1
1,973,907 + IAI47_09340 0.87 +1.9
1,973,938 + -0.4
1,973,939 - +0.4
1,974,000 + +0.3
1,974,000 + +0.1
1,974,001 - -1.3
1,974,001 - -0.5
1,974,001 - -0.0
1,974,010 + -0.1
1,974,011 - -2.5
1,974,011 - -1.0
1,974,011 - +0.2
1,974,098 + +2.0
1,974,098 + -0.6
1,974,099 - +0.4
1,974,107 + +0.6
1,974,107 + -1.1
1,974,108 - +0.2
1,974,121 + -0.4
1,974,121 + +1.3
1,974,122 - -0.4
1,974,167 + -0.4
1,974,182 + -1.3
1,974,186 + -0.5
1,974,211 + -1.0
1,974,212 - -1.3
1,974,212 - -0.9
1,974,212 - -2.4
1,974,216 - -1.3
1,974,219 + -0.3
1,974,220 - +0.7
1,974,345 + IAI47_09345 0.17 +0.1
1,974,361 - IAI47_09345 0.19 +0.3
1,974,412 + IAI47_09345 0.25 -1.0
1,974,413 - IAI47_09345 0.25 -1.6
1,974,551 - IAI47_09345 0.40 +0.6
1,974,698 + IAI47_09345 0.57 -1.0
1,974,698 + IAI47_09345 0.57 +0.4
1,974,698 + IAI47_09345 0.57 +1.3
1,974,698 + IAI47_09345 0.57 -0.6
1,974,699 - IAI47_09345 0.57 -1.5
1,974,809 - IAI47_09345 0.69 -0.4
1,974,809 - IAI47_09345 0.69 -0.3
1,974,816 + IAI47_09345 0.70 -1.5
1,974,817 - IAI47_09345 0.70 +0.5
1,974,817 - IAI47_09345 0.70 -0.7
1,974,817 - IAI47_09345 0.70 -2.0
1,974,870 + IAI47_09345 0.76 -0.5
1,974,870 + IAI47_09345 0.76 -0.7
1,974,870 + IAI47_09345 0.76 +0.3
1,974,871 - IAI47_09345 0.76 -0.8
1,974,871 - IAI47_09345 0.76 -0.6
1,974,871 - IAI47_09345 0.76 -1.1
1,974,871 - IAI47_09345 0.76 -1.0
1,974,871 - IAI47_09345 0.76 -1.8
1,974,873 + IAI47_09345 0.76 -0.8
1,974,873 + IAI47_09345 0.76 -0.1
1,974,873 + IAI47_09345 0.76 -0.3
1,974,873 + IAI47_09345 0.76 -1.1
1,974,873 + IAI47_09345 0.76 +0.0
1,974,874 - IAI47_09345 0.76 -0.2
1,974,874 - IAI47_09345 0.76 -1.1
1,974,874 - IAI47_09345 0.76 +1.6
1,974,874 - IAI47_09345 0.76 +2.0
1,974,975 + IAI47_09345 0.88 -1.6
1,974,975 + IAI47_09345 0.88 +0.1
1,974,976 - IAI47_09345 0.88 -0.4
1,974,976 - IAI47_09345 0.88 -0.4
1,975,083 - -1.1
1,975,083 - -1.1
1,975,084 + +0.8
1,975,084 + +0.9
1,975,084 + -1.9
1,975,084 + -2.1
1,975,085 - +0.6
1,975,093 + +0.1
1,975,093 + -0.6
1,975,093 + +0.3
1,975,094 - -0.1
1,975,140 + -1.6
1,975,155 + +1.1
1,975,155 + -0.6
1,975,155 + +0.2
1,975,155 + +0.4
1,975,156 - +0.1
1,975,156 - +0.1
1,975,159 - +0.3
1,975,262 + IAI47_09350 0.15 -1.6
1,975,262 + IAI47_09350 0.15 -0.7
1,975,263 - IAI47_09350 0.15 -0.4
1,975,361 + IAI47_09350 0.24 -0.9
1,975,388 + IAI47_09350 0.27 -0.7
1,975,429 + IAI47_09350 0.30 +0.4
1,975,429 + IAI47_09350 0.30 -0.5
1,975,429 + IAI47_09350 0.30 +0.5
1,975,429 + IAI47_09350 0.30 -0.1
1,975,429 + IAI47_09350 0.30 +0.9
1,975,430 - IAI47_09350 0.30 -0.3
1,975,529 - IAI47_09350 0.39 +0.1
1,975,678 + IAI47_09350 0.53 -0.2
1,975,769 + IAI47_09350 0.61 -0.8
1,975,769 + IAI47_09350 0.61 +0.6
1,975,770 - IAI47_09350 0.61 -0.6
1,975,770 - IAI47_09350 0.61 -0.2
1,975,770 - IAI47_09350 0.61 -2.3
1,975,770 - IAI47_09350 0.61 +0.8
1,975,801 + IAI47_09350 0.64 +0.1
1,975,801 + IAI47_09350 0.64 +0.7
1,975,801 + IAI47_09350 0.64 +0.6
1,975,801 + IAI47_09350 0.64 +0.6
1,975,826 + IAI47_09350 0.66 +1.3
1,975,826 + IAI47_09350 0.66 -0.1
1,975,827 - IAI47_09350 0.66 -0.9
1,975,830 - IAI47_09350 0.66 -0.3
1,975,830 - IAI47_09350 0.66 +0.4
1,975,866 + IAI47_09350 0.70 +0.3
1,975,866 + IAI47_09350 0.70 +0.3
1,975,879 + IAI47_09350 0.71 -0.5
1,975,879 + IAI47_09350 0.71 +1.4
1,975,879 + IAI47_09350 0.71 -0.2
1,975,880 - IAI47_09350 0.71 +0.1
1,975,887 - IAI47_09350 0.71 -0.6
1,975,887 - IAI47_09350 0.71 +1.9
1,975,945 + IAI47_09350 0.77 -1.2
1,975,946 - IAI47_09350 0.77 +0.9
1,975,953 + IAI47_09350 0.77 -0.2
1,975,958 + IAI47_09350 0.78 -1.8
1,975,958 + IAI47_09350 0.78 -1.0
1,975,958 + IAI47_09350 0.78 -0.3
1,975,958 + IAI47_09350 0.78 -0.4
1,975,959 - IAI47_09350 0.78 +1.1
1,975,959 - IAI47_09350 0.78 -0.1
1,975,959 - IAI47_09350 0.78 -0.1
1,975,959 - IAI47_09350 0.78 -0.1
1,976,059 - IAI47_09350 0.87 +0.7
1,976,059 - IAI47_09350 0.87 -0.1
1,976,060 - IAI47_09350 0.87 +1.0
1,976,074 + IAI47_09350 0.88 -1.3
1,976,075 - IAI47_09350 0.88 -0.6

Or see this region's nucleotide sequence