Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00295 and IAI47_00300 are separated by 47 nucleotides IAI47_00300 and IAI47_00305 are separated by 432 nucleotides
IAI47_00295: IAI47_00295 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 63,356 to 63,973
_00295
IAI47_00300: IAI47_00300 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 64,021 to 65,910
_00300
IAI47_00305: IAI47_00305 - FMN-binding protein MioC, at 66,343 to 66,783
_00305
Position (kb) 64
65
66 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 63.044 kb on - strand at 63.044 kb on - strand at 63.044 kb on - strand at 63.077 kb on + strand at 63.077 kb on + strand at 63.077 kb on + strand at 63.077 kb on + strand at 63.077 kb on + strand at 63.078 kb on - strand at 63.078 kb on - strand at 63.078 kb on - strand at 63.083 kb on + strand at 63.084 kb on - strand at 63.084 kb on - strand at 63.101 kb on + strand at 63.102 kb on - strand at 63.104 kb on + strand at 63.105 kb on - strand at 63.105 kb on - strand at 63.105 kb on - strand at 63.118 kb on + strand at 63.118 kb on + strand at 63.130 kb on - strand at 63.130 kb on - strand at 63.132 kb on - strand at 63.132 kb on - strand at 63.154 kb on - strand at 63.194 kb on - strand at 63.303 kb on + strand at 63.303 kb on + strand at 63.303 kb on + strand at 63.303 kb on + strand at 63.304 kb on - strand at 63.304 kb on - strand at 63.304 kb on - strand at 63.304 kb on - strand at 63.304 kb on - strand at 63.304 kb on - strand at 63.332 kb on + strand at 63.332 kb on + strand at 63.333 kb on - strand at 63.333 kb on - strand at 63.333 kb on - strand at 63.345 kb on + strand at 63.345 kb on + strand at 63.346 kb on - strand at 63.346 kb on - strand at 63.346 kb on - strand at 63.357 kb on + strand at 63.358 kb on - strand at 63.415 kb on + strand at 63.415 kb on + strand at 63.416 kb on - strand at 63.416 kb on - strand at 63.435 kb on + strand, within IAI47_00295 at 63.435 kb on + strand, within IAI47_00295 at 63.435 kb on + strand, within IAI47_00295 at 63.436 kb on - strand, within IAI47_00295 at 63.436 kb on - strand, within IAI47_00295 at 63.482 kb on - strand, within IAI47_00295 at 63.535 kb on + strand, within IAI47_00295 at 63.697 kb on + strand, within IAI47_00295 at 63.698 kb on - strand, within IAI47_00295 at 63.716 kb on + strand, within IAI47_00295 at 63.716 kb on + strand, within IAI47_00295 at 63.716 kb on + strand, within IAI47_00295 at 63.716 kb on + strand, within IAI47_00295 at 63.717 kb on - strand, within IAI47_00295 at 63.717 kb on - strand, within IAI47_00295 at 63.717 kb on - strand, within IAI47_00295 at 63.717 kb on - strand, within IAI47_00295 at 63.717 kb on - strand, within IAI47_00295 at 63.766 kb on + strand, within IAI47_00295 at 63.766 kb on + strand, within IAI47_00295 at 63.767 kb on - strand, within IAI47_00295 at 63.767 kb on - strand, within IAI47_00295 at 63.805 kb on + strand, within IAI47_00295 at 63.805 kb on + strand, within IAI47_00295 at 63.806 kb on - strand, within IAI47_00295 at 63.806 kb on - strand, within IAI47_00295 at 63.814 kb on + strand, within IAI47_00295 at 63.814 kb on + strand, within IAI47_00295 at 63.815 kb on - strand, within IAI47_00295 at 63.815 kb on - strand, within IAI47_00295 at 63.861 kb on + strand, within IAI47_00295 at 63.862 kb on - strand, within IAI47_00295 at 63.877 kb on + strand, within IAI47_00295 at 63.877 kb on + strand, within IAI47_00295 at 63.877 kb on + strand, within IAI47_00295 at 63.878 kb on - strand, within IAI47_00295 at 63.878 kb on - strand, within IAI47_00295 at 63.894 kb on + strand, within IAI47_00295 at 63.894 kb on + strand, within IAI47_00295 at 63.894 kb on + strand, within IAI47_00295 at 63.894 kb on + strand, within IAI47_00295 at 63.895 kb on - strand, within IAI47_00295 at 63.895 kb on - strand, within IAI47_00295 at 63.895 kb on - strand, within IAI47_00295 at 63.934 kb on + strand at 63.935 kb on - strand at 63.935 kb on - strand at 63.947 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.979 kb on - strand at 63.979 kb on - strand at 63.979 kb on - strand at 63.979 kb on - strand at 63.979 kb on - strand at 63.979 kb on - strand at 63.979 kb on - strand at 64.032 kb on + strand at 64.032 kb on + strand at 64.032 kb on + strand at 64.033 kb on - strand at 64.033 kb on - strand at 64.033 kb on - strand at 64.059 kb on - strand at 64.686 kb on - strand, within IAI47_00300 at 65.118 kb on - strand, within IAI47_00300 at 65.266 kb on - strand, within IAI47_00300 at 66.027 kb on - strand at 66.238 kb on + strand at 66.255 kb on + strand at 66.802 kb on - strand at 66.802 kb on - strand at 66.815 kb on + strand at 66.815 kb on + strand at 66.815 kb on + strand at 66.815 kb on + strand at 66.816 kb on - strand at 66.816 kb on - strand at 66.816 kb on - strand at 66.816 kb on - strand at 66.816 kb on - strand at 66.816 kb on - strand at 66.816 kb on - strand at 66.816 kb on - strand at 66.816 kb on - strand at 66.857 kb on + strand at 66.857 kb on + strand at 66.857 kb on + strand at 66.858 kb on - strand at 66.858 kb on - strand at 66.860 kb on + strand at 66.860 kb on + strand at 66.860 kb on + strand at 66.860 kb on + strand at 66.860 kb on + strand at 66.860 kb on + strand at 66.860 kb on + strand at 66.860 kb on + strand at 66.860 kb on + strand at 66.860 kb on + strand at 66.861 kb on - strand at 66.861 kb on - strand at 66.861 kb on - strand at 66.861 kb on - strand at 66.861 kb on - strand at 66.861 kb on - strand at 66.861 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 63,044 - -0.5 63,044 - -1.1 63,044 - -1.3 63,077 + -0.7 63,077 + +0.1 63,077 + -1.2 63,077 + -0.1 63,077 + +0.3 63,078 - -0.4 63,078 - +0.2 63,078 - -1.1 63,083 + -0.5 63,084 - -1.6 63,084 - +0.2 63,101 + -1.0 63,102 - +1.0 63,104 + +0.3 63,105 - +0.0 63,105 - -1.0 63,105 - -0.7 63,118 + +0.2 63,118 + -0.7 63,130 - -1.1 63,130 - +0.4 63,132 - +0.8 63,132 - +0.7 63,154 - -0.3 63,194 - +1.2 63,303 + +2.6 63,303 + +1.3 63,303 + -0.9 63,303 + -2.4 63,304 - +0.5 63,304 - +0.6 63,304 - +0.5 63,304 - -0.2 63,304 - +0.8 63,304 - -0.6 63,332 + +0.0 63,332 + +0.4 63,333 - -0.3 63,333 - -0.4 63,333 - -0.3 63,345 + -0.8 63,345 + -1.4 63,346 - +1.0 63,346 - +0.6 63,346 - -0.7 63,357 + +0.7 63,358 - +0.1 63,415 + +2.1 63,415 + -2.3 63,416 - -0.2 63,416 - +1.3 63,435 + IAI47_00295 0.13 +0.3 63,435 + IAI47_00295 0.13 -0.3 63,435 + IAI47_00295 0.13 -0.8 63,436 - IAI47_00295 0.13 -1.9 63,436 - IAI47_00295 0.13 +0.1 63,482 - IAI47_00295 0.20 -0.9 63,535 + IAI47_00295 0.29 +1.2 63,697 + IAI47_00295 0.55 -0.5 63,698 - IAI47_00295 0.55 -0.6 63,716 + IAI47_00295 0.58 -0.6 63,716 + IAI47_00295 0.58 -0.2 63,716 + IAI47_00295 0.58 -0.2 63,716 + IAI47_00295 0.58 -0.7 63,717 - IAI47_00295 0.58 -0.2 63,717 - IAI47_00295 0.58 -0.4 63,717 - IAI47_00295 0.58 +0.5 63,717 - IAI47_00295 0.58 -0.5 63,717 - IAI47_00295 0.58 +0.8 63,766 + IAI47_00295 0.66 +1.2 63,766 + IAI47_00295 0.66 -0.4 63,767 - IAI47_00295 0.67 -2.1 63,767 - IAI47_00295 0.67 -1.5 63,805 + IAI47_00295 0.73 +0.5 63,805 + IAI47_00295 0.73 -0.5 63,806 - IAI47_00295 0.73 -2.1 63,806 - IAI47_00295 0.73 +1.1 63,814 + IAI47_00295 0.74 +1.4 63,814 + IAI47_00295 0.74 +2.1 63,815 - IAI47_00295 0.74 +0.5 63,815 - IAI47_00295 0.74 +2.2 63,861 + IAI47_00295 0.82 +1.0 63,862 - IAI47_00295 0.82 -1.0 63,877 + IAI47_00295 0.84 +0.7 63,877 + IAI47_00295 0.84 +1.2 63,877 + IAI47_00295 0.84 +0.1 63,878 - IAI47_00295 0.84 -0.3 63,878 - IAI47_00295 0.84 +1.7 63,894 + IAI47_00295 0.87 +0.4 63,894 + IAI47_00295 0.87 -0.6 63,894 + IAI47_00295 0.87 +0.6 63,894 + IAI47_00295 0.87 -0.5 63,895 - IAI47_00295 0.87 -0.0 63,895 - IAI47_00295 0.87 +2.4 63,895 - IAI47_00295 0.87 -0.6 63,934 + +0.1 63,935 - +0.7 63,935 - -1.1 63,947 + +0.5 63,978 + +0.1 63,978 + -2.4 63,978 + +0.4 63,978 + +1.1 63,978 + +0.5 63,978 + +1.1 63,978 + +1.3 63,978 + +1.2 63,978 + +0.3 63,978 + +0.2 63,979 - +0.0 63,979 - +0.9 63,979 - -0.0 63,979 - +2.2 63,979 - -2.3 63,979 - +0.1 63,979 - +1.4 64,032 + +0.3 64,032 + +0.2 64,032 + -0.7 64,033 - +1.3 64,033 - +0.3 64,033 - -0.4 64,059 - -1.3 64,686 - IAI47_00300 0.35 -1.4 65,118 - IAI47_00300 0.58 +1.0 65,266 - IAI47_00300 0.66 -0.2 66,027 - +0.6 66,238 + -0.9 66,255 + +1.7 66,802 - -1.2 66,802 - +1.0 66,815 + -1.2 66,815 + +0.2 66,815 + -0.2 66,815 + +0.1 66,816 - -1.4 66,816 - +0.4 66,816 - +0.1 66,816 - +0.8 66,816 - +0.7 66,816 - +0.6 66,816 - +0.4 66,816 - +2.0 66,816 - -1.0 66,857 + -0.2 66,857 + -1.0 66,857 + +3.0 66,858 - -0.3 66,858 - -1.5 66,860 + +1.5 66,860 + -0.9 66,860 + -0.0 66,860 + +0.8 66,860 + -1.0 66,860 + +1.9 66,860 + +0.7 66,860 + -1.5 66,860 + +0.0 66,860 + +0.5 66,861 - -1.6 66,861 - -1.3 66,861 - +2.1 66,861 - -0.3 66,861 - -1.0 66,861 - -0.5 66,861 - +2.4
Or see this region's nucleotide sequence