Strain Fitness in Pantoea sp. MT58 around IAI47_19415

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
108,648	+		IAI47_19410	0.12	+1.3
108,677	+		IAI47_19410	0.15	-0.5
108,678	-		IAI47_19410	0.15	+0.0
108,678	-		IAI47_19410	0.15	-0.2
108,678	-		IAI47_19410	0.15	-1.0
108,680	+		IAI47_19410	0.15	+1.0
108,680	+		IAI47_19410	0.15	-1.0
108,680	+		IAI47_19410	0.15	+1.5
108,680	+		IAI47_19410	0.15	-1.7
108,680	+		IAI47_19410	0.15	-0.7
108,681	-		IAI47_19410	0.15	+1.9
108,681	-		IAI47_19410	0.15	+2.6
108,681	-		IAI47_19410	0.15	-0.1
108,681	-		IAI47_19410	0.15	+1.4
108,699	+		IAI47_19410	0.17	+0.4
108,715	+		IAI47_19410	0.18	+1.0
108,715	+		IAI47_19410	0.18	+1.3
108,716	-		IAI47_19410	0.18	+0.5
108,769	+		IAI47_19410	0.23	+2.1
108,770	-		IAI47_19410	0.23	+0.8
108,770	-		IAI47_19410	0.23	-1.8
108,770	-		IAI47_19410	0.23	+1.0
108,866	-		IAI47_19410	0.32	-0.2
108,873	+		IAI47_19410	0.33	+0.6
108,873	+		IAI47_19410	0.33	-0.3
108,874	-		IAI47_19410	0.33	+0.8
108,948	-		IAI47_19410	0.40	+1.8
109,111	-		IAI47_19410	0.54	-1.0
109,111	-		IAI47_19410	0.54	+0.3
109,120	+		IAI47_19410	0.55	+2.2
109,120	+		IAI47_19410	0.55	+0.2
109,151	+		IAI47_19410	0.58	-0.3
109,152	-		IAI47_19410	0.58	-0.0
109,152	-		IAI47_19410	0.58	+1.6
109,163	+		IAI47_19410	0.59	-0.1
109,163	+		IAI47_19410	0.59	-0.2
109,163	+		IAI47_19410	0.59	+2.5
109,164	-		IAI47_19410	0.59	-1.2
109,190	+		IAI47_19410	0.62	-0.9
109,257	-		IAI47_19410	0.68	-1.6
109,373	-		IAI47_19410	0.78	+0.6
109,373	-		IAI47_19410	0.78	-0.5
109,426	-		IAI47_19410	0.83	+2.0
109,426	-		IAI47_19410	0.83	-1.0
109,456	+		IAI47_19410	0.86	+0.8
109,457	-		IAI47_19410	0.86	+0.9
109,457	-		IAI47_19410	0.86	+1.5
109,526	-				-0.0
109,526	-				+3.5
109,526	-				+0.6
109,549	+				+1.3
109,550	-				-1.6
109,564	+				+2.9
109,568	-				-1.8
109,589	+				+2.0
109,665	+				-0.1
109,723	+				-1.5
109,723	+				+0.5
109,723	+				+0.3
109,723	+				+2.3
109,723	+				+0.1
109,723	+				+1.5
109,724	-				+0.4
109,724	-				+0.8
109,724	-				-2.5
109,724	-				-0.4
109,724	-				-1.9
109,726	+				-0.2
109,727	-				+0.7
109,727	-				-2.0
109,746	-				-1.1
109,748	+				+0.1
109,748	+				+0.9
109,748	+				-1.0
109,748	+				-2.4
109,749	-				+0.4
109,749	-				+0.9
109,749	-				-0.3
109,749	-				+0.7
109,749	-				+1.0
109,822	+				-0.4
109,823	-				-0.9
109,823	-				-0.6
109,823	-				-1.2
109,823	-				+0.3
109,873	+		IAI47_19415	0.11	+0.5
109,873	+		IAI47_19415	0.11	+0.9
109,873	+		IAI47_19415	0.11	-1.6
109,940	-		IAI47_19415	0.14	-2.1
109,940	-		IAI47_19415	0.14	-0.1
109,997	+		IAI47_19415	0.17	+0.0
110,029	+		IAI47_19415	0.18	+0.3
110,029	+		IAI47_19415	0.18	+2.7
110,029	+		IAI47_19415	0.18	+0.3
110,029	+		IAI47_19415	0.18	-2.7
110,029	+		IAI47_19415	0.18	+0.4
110,029	+		IAI47_19415	0.18	+0.1
110,029	+		IAI47_19415	0.18	+0.6
110,029	+		IAI47_19415	0.18	-1.3
110,029	+		IAI47_19415	0.18	-1.2
110,030	-		IAI47_19415	0.18	-0.5
110,030	-		IAI47_19415	0.18	-2.0
110,030	-		IAI47_19415	0.18	+2.0
110,030	-		IAI47_19415	0.18	+0.8
110,030	-		IAI47_19415	0.18	+0.1
110,030	-		IAI47_19415	0.18	-1.0
110,035	+		IAI47_19415	0.18	+0.5
110,035	+		IAI47_19415	0.18	+0.3
110,035	+		IAI47_19415	0.18	+0.2
110,035	+		IAI47_19415	0.18	+2.2
110,035	+		IAI47_19415	0.18	+0.6
110,035	+		IAI47_19415	0.18	+1.0
110,035	+		IAI47_19415	0.18	+0.4
110,036	-		IAI47_19415	0.18	+2.3
110,036	-		IAI47_19415	0.18	+0.4
110,036	-		IAI47_19415	0.18	+1.0
110,108	+		IAI47_19415	0.22	+0.4
110,109	-		IAI47_19415	0.22	-0.3
110,109	-		IAI47_19415	0.22	-1.3
110,109	-		IAI47_19415	0.22	-0.1
110,133	-		IAI47_19415	0.23	-1.1
110,133	-		IAI47_19415	0.23	+1.4
110,135	+		IAI47_19415	0.23	+0.6
110,136	-		IAI47_19415	0.23	-2.8
110,136	-		IAI47_19415	0.23	+0.7
110,136	-		IAI47_19415	0.23	-0.6
110,136	-		IAI47_19415	0.23	-1.0
110,308	+		IAI47_19415	0.31	-0.3
110,308	+		IAI47_19415	0.31	+0.1
110,308	+		IAI47_19415	0.31	+0.7
110,309	-		IAI47_19415	0.31	-1.7
110,309	-		IAI47_19415	0.31	+0.7
110,328	-		IAI47_19415	0.32	+0.6
110,335	+		IAI47_19415	0.33	+0.6
110,335	+		IAI47_19415	0.33	-0.6
110,336	-		IAI47_19415	0.33	+1.8
110,336	-		IAI47_19415	0.33	-0.9
110,336	-		IAI47_19415	0.33	+0.8
110,363	+		IAI47_19415	0.34	-0.6
110,363	+		IAI47_19415	0.34	+1.1
110,363	+		IAI47_19415	0.34	-1.4
110,363	+		IAI47_19415	0.34	-1.2
110,364	-		IAI47_19415	0.34	+0.3
110,364	-		IAI47_19415	0.34	-0.2
110,364	-		IAI47_19415	0.34	-2.0
110,425	+		IAI47_19415	0.37	+2.1
110,425	+		IAI47_19415	0.37	-0.4
110,426	-		IAI47_19415	0.37	+0.4
110,426	-		IAI47_19415	0.37	-1.3
110,486	+		IAI47_19415	0.40	-1.7
110,486	+		IAI47_19415	0.40	+0.3
110,491	+		IAI47_19415	0.40	-1.3
110,492	-				-0.0
110,492	-		IAI47_19415	0.40	-1.3
110,505	-		IAI47_19415	0.41	+1.7
110,522	+		IAI47_19415	0.41	-2.5
110,523	-		IAI47_19415	0.41	-0.8
110,526	-		IAI47_19415	0.42	-0.1
110,578	+		IAI47_19415	0.44	-1.0
110,578	+		IAI47_19415	0.44	-0.6
110,578	+		IAI47_19415	0.44	+0.9
110,578	+		IAI47_19415	0.44	-2.2
110,578	+		IAI47_19415	0.44	+0.9
110,579	-		IAI47_19415	0.44	+0.2
110,579	-		IAI47_19415	0.44	+0.3
110,593	+		IAI47_19415	0.45	-0.9
110,594	-		IAI47_19415	0.45	+1.0
110,594	-		IAI47_19415	0.45	-0.5
110,623	+		IAI47_19415	0.46	-0.7
110,624	-		IAI47_19415	0.46	-0.5
110,638	+		IAI47_19415	0.47	+0.6
110,639	-		IAI47_19415	0.47	-1.9
110,639	-		IAI47_19415	0.47	-1.8
110,639	-		IAI47_19415	0.47	-0.1
110,639	-		IAI47_19415	0.47	+0.7
110,656	+		IAI47_19415	0.48	-0.4
110,657	-		IAI47_19415	0.48	+1.1
110,657	-		IAI47_19415	0.48	+1.1
110,724	+		IAI47_19415	0.51	+1.4
110,724	+		IAI47_19415	0.51	-1.8
110,724	+		IAI47_19415	0.51	+0.2
110,724	+		IAI47_19415	0.51	+1.0
110,724	+		IAI47_19415	0.51	-1.0
110,724	+		IAI47_19415	0.51	+0.2
110,725	-		IAI47_19415	0.51	-1.1
110,725	-		IAI47_19415	0.51	+0.7
110,725	-		IAI47_19415	0.51	-0.3
110,725	-		IAI47_19415	0.51	-2.4
110,725	-		IAI47_19415	0.51	-1.3
110,728	+		IAI47_19415	0.51	+1.6
110,728	+		IAI47_19415	0.51	-1.9
110,728	+		IAI47_19415	0.51	-2.0
110,728	+		IAI47_19415	0.51	+2.3
110,728	+		IAI47_19415	0.51	-1.7
110,729	-		IAI47_19415	0.51	+0.2
110,729	-		IAI47_19415	0.51	-0.5
110,729	-		IAI47_19415	0.51	+1.1
110,819	+		IAI47_19415	0.55	-0.5
110,819	+		IAI47_19415	0.55	-0.1
110,820	-		IAI47_19415	0.55	-0.4
110,820	-		IAI47_19415	0.55	+0.2
110,820	-		IAI47_19415	0.55	+1.7
110,820	-		IAI47_19415	0.55	-0.2
110,820	-		IAI47_19415	0.55	-0.4
110,822	+		IAI47_19415	0.56	+0.7
110,822	+		IAI47_19415	0.56	-1.4
110,822	+		IAI47_19415	0.56	+0.7
110,822	+		IAI47_19415	0.56	-1.0
110,822	+		IAI47_19415	0.56	+1.8
110,822	+		IAI47_19415	0.56	-0.5
110,822	+		IAI47_19415	0.56	+0.4
110,822	+		IAI47_19415	0.56	+0.3
110,823	-		IAI47_19415	0.56	+0.0
110,823	-		IAI47_19415	0.56	+1.4
110,823	-		IAI47_19415	0.56	-0.4
110,823	-		IAI47_19415	0.56	-1.6
110,827	+		IAI47_19415	0.56	+0.3
110,828	-		IAI47_19415	0.56	+0.7
110,828	-		IAI47_19415	0.56	+0.4
110,828	-		IAI47_19415	0.56	-0.7
110,828	-		IAI47_19415	0.56	-0.7
110,853	+		IAI47_19415	0.57	-1.0
110,876	+		IAI47_19415	0.58	-2.0
110,890	+		IAI47_19415	0.59	+3.0
110,890	+		IAI47_19415	0.59	-0.1
110,891	-		IAI47_19415	0.59	-0.5
110,891	-		IAI47_19415	0.59	+1.5
110,891	-		IAI47_19415	0.59	-0.7
110,912	+		IAI47_19415	0.60	+0.9
110,912	+		IAI47_19415	0.60	+0.1
110,912	+		IAI47_19415	0.60	+2.1
110,930	+		IAI47_19415	0.61	-0.2
110,930	+		IAI47_19415	0.61	+0.3
110,930	+		IAI47_19415	0.61	-0.9
110,931	-		IAI47_19415	0.61	+1.3
110,936	+		IAI47_19415	0.61	+1.0
110,937	-		IAI47_19415	0.61	-1.2
110,963	+		IAI47_19415	0.62	-1.0
110,964	-		IAI47_19415	0.62	-1.7
110,964	-		IAI47_19415	0.62	+0.3
111,004	+		IAI47_19415	0.64	+0.7
111,004	+		IAI47_19415	0.64	+0.4
111,011	+		IAI47_19415	0.64	+3.4
111,011	+		IAI47_19415	0.64	-1.3
111,011	+		IAI47_19415	0.64	-0.8
111,012	-		IAI47_19415	0.64	-1.2
111,016	+		IAI47_19415	0.65	-0.4
111,017	-		IAI47_19415	0.65	+0.1
111,017	-		IAI47_19415	0.65	-0.9
111,017	-		IAI47_19415	0.65	-0.0
111,023	-		IAI47_19415	0.65	-0.0
111,023	-		IAI47_19415	0.65	-0.7
111,031	+		IAI47_19415	0.65	-0.2
111,031	+		IAI47_19415	0.65	-0.9
111,032	-		IAI47_19415	0.65	+0.4
111,032	-		IAI47_19415	0.65	-0.5
111,032	-		IAI47_19415	0.65	-1.5
111,032	-		IAI47_19415	0.65	-0.0
111,084	+		IAI47_19415	0.68	-1.8
111,084	+		IAI47_19415	0.68	+1.5
111,084	+		IAI47_19415	0.68	+0.1
111,085	-		IAI47_19415	0.68	+0.4
111,085	-		IAI47_19415	0.68	+0.7
111,085	-		IAI47_19415	0.68	+0.3
111,085	-		IAI47_19415	0.68	-0.9
111,085	-		IAI47_19415	0.68	-1.8
111,085	-		IAI47_19415	0.68	-1.4
111,118	+		IAI47_19415	0.69	-2.0
111,119	-		IAI47_19415	0.70	+0.5
111,217	+		IAI47_19415	0.74	-1.2
111,217	+		IAI47_19415	0.74	-1.0
111,218	-		IAI47_19415	0.74	+0.6
111,245	+		IAI47_19415	0.75	-0.2
111,245	+		IAI47_19415	0.75	-1.5
111,245	+		IAI47_19415	0.75	-1.3
111,246	-		IAI47_19415	0.76	-0.7
111,246	-		IAI47_19415	0.76	-0.6
111,246	-		IAI47_19415	0.76	-0.9
111,246	-		IAI47_19415	0.76	-1.3
111,246	-		IAI47_19415	0.76	+0.3
111,246	-		IAI47_19415	0.76	+0.2
111,246	-		IAI47_19415	0.76	-1.9
111,246	-		IAI47_19415	0.76	+0.1
111,247	+		IAI47_19415	0.76	-0.3
111,247	+		IAI47_19415	0.76	+0.6
111,247	+		IAI47_19415	0.76	+1.1
111,247	+		IAI47_19415	0.76	-2.6
111,247	+		IAI47_19415	0.76	-0.9
111,247	+		IAI47_19415	0.76	-0.6
111,248	-		IAI47_19415	0.76	-1.8
111,248	-		IAI47_19415	0.76	-0.4
111,301	+		IAI47_19415	0.78	+0.8
111,301	+		IAI47_19415	0.78	-0.0
111,392	-		IAI47_19415	0.82	+0.6
111,616	+				+1.2
111,617	-				+0.4
111,617	-				-0.4
111,653	+				+1.8
111,695	+				+1.0
111,695	+				+2.3
111,695	+				+2.0
111,695	+				-0.5
111,695	+				+0.5
111,695	+				+1.2
111,695	+				-2.7
111,696	-				+0.5
111,696	-				-0.5
111,696	-				+0.2
111,696	-				+1.1
111,696	-				+1.3
111,781	+				-1.2
111,781	+				-1.0
111,782	-				-0.8
111,800	+				-1.4
111,801	-				+3.3
111,803	+				+1.1
111,803	+				-0.5
111,804	-				+0.8
111,804	-				+0.7
111,855	+				+0.3
111,855	+				+1.0
111,855	+				+0.8
111,855	+				+1.5
111,855	+				-2.7
111,855	+				-1.5
111,856	-				-2.0
111,856	-				+1.9
111,867	+				-0.4
111,867	+				+0.1
111,868	-				-1.2
111,868	-				-1.2
111,868	-				-1.5
111,963	-				-1.8
111,967	+				+0.8
111,996	-				+0.6
112,089	+				-2.2
112,089	+				-0.3
112,090	-				-0.7
112,090	-				-0.0
112,137	-				-0.4
112,137	-				+0.9
112,204	+				-0.2
112,204	+				-0.3
112,205	-				-0.7
112,205	-				-0.5
112,205	-				-2.2
112,214	+				-1.5
112,215	-				-0.3
112,215	-				+0.4
112,215	-				+0.5
112,338	+		IAI47_19420	0.11	+0.1
112,338	+		IAI47_19420	0.11	-0.0
112,338	+		IAI47_19420	0.11	-1.5
112,340	+		IAI47_19420	0.12	+0.7
112,340	+		IAI47_19420	0.12	+0.6
112,341	-		IAI47_19420	0.12	+0.4
112,393	+		IAI47_19420	0.18	+1.0
112,449	-		IAI47_19420	0.24	+1.1
112,479	-		IAI47_19420	0.27	+1.0
112,514	+		IAI47_19420	0.31	-0.5
112,514	+		IAI47_19420	0.31	+3.8
112,514	+		IAI47_19420	0.31	-0.1
112,514	+		IAI47_19420	0.31	-0.7
112,514	+		IAI47_19420	0.31	-0.6
112,514	+		IAI47_19420	0.31	-0.7
112,515	-		IAI47_19420	0.31	-2.1
112,515	-		IAI47_19420	0.31	+1.1
112,515	-		IAI47_19420	0.31	+1.0
112,515	-		IAI47_19420	0.31	+1.0
112,515	-		IAI47_19420	0.31	-0.5
112,590	+		IAI47_19420	0.40	-0.3
112,590	+		IAI47_19420	0.40	+0.7
112,590	+		IAI47_19420	0.40	+0.6
112,591	-		IAI47_19420	0.40	+0.9
112,619	+		IAI47_19420	0.43	+1.7
112,620	-		IAI47_19420	0.43	+1.4
112,677	-		IAI47_19420	0.49	-0.2
112,688	+		IAI47_19420	0.51	-1.9
112,688	+		IAI47_19420	0.51	+0.5
112,688	+		IAI47_19420	0.51	-0.1
112,689	-		IAI47_19420	0.51	+1.4
112,713	+		IAI47_19420	0.54	+1.5
112,713	+		IAI47_19420	0.54	+1.8
112,729	+		IAI47_19420	0.55	-0.4
112,729	+		IAI47_19420	0.55	+0.2
112,730	-		IAI47_19420	0.55	-0.4
112,736	+		IAI47_19420	0.56	-0.4