Strain Fitness in Pantoea sp. MT58 around IAI47_19165

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
59,231	+		IAI47_19160	0.55	-0.2
59,231	+		IAI47_19160	0.55	-0.4
59,231	+		IAI47_19160	0.55	-1.3
59,231	+		IAI47_19160	0.55	-1.3
59,232	-		IAI47_19160	0.55	-1.6
59,232	-		IAI47_19160	0.55	+2.3
59,232	-		IAI47_19160	0.55	+1.0
59,232	-		IAI47_19160	0.55	-0.1
59,232	-		IAI47_19160	0.55	-1.4
59,369	+		IAI47_19160	0.63	-1.8
59,370	-		IAI47_19160	0.63	+1.0
59,400	-		IAI47_19160	0.65	-0.1
59,420	+		IAI47_19160	0.66	-0.4
59,420	+		IAI47_19160	0.66	-1.7
59,420	+		IAI47_19160	0.66	-0.2
59,420	+		IAI47_19160	0.66	-0.0
59,420	+		IAI47_19160	0.66	+1.5
59,420	+		IAI47_19160	0.66	+1.3
59,421	-		IAI47_19160	0.67	-1.7
59,421	-		IAI47_19160	0.67	-0.1
59,421	-		IAI47_19160	0.67	+1.4
59,440	+		IAI47_19160	0.68	+0.1
59,440	+		IAI47_19160	0.68	-1.1
59,440	+		IAI47_19160	0.68	+1.5
59,440	+		IAI47_19160	0.68	+0.3
59,440	+		IAI47_19160	0.68	+0.8
59,440	+		IAI47_19160	0.68	+0.4
59,440	+		IAI47_19160	0.68	+0.2
59,441	-		IAI47_19160	0.68	-0.5
59,441	-		IAI47_19160	0.68	-1.4
59,441	-		IAI47_19160	0.68	+0.1
59,450	+		IAI47_19160	0.68	-0.6
59,593	+		IAI47_19160	0.77	-0.3
59,593	+		IAI47_19160	0.77	+1.5
59,593	+		IAI47_19160	0.77	+0.3
59,594	-		IAI47_19160	0.77	-0.2
59,594	-		IAI47_19160	0.77	-0.5
59,594	-		IAI47_19160	0.77	-1.6
59,630	+		IAI47_19160	0.79	-1.8
59,630	+		IAI47_19160	0.79	-2.0
59,631	-		IAI47_19160	0.79	-1.4
59,642	+		IAI47_19160	0.80	+0.9
59,642	+		IAI47_19160	0.80	-2.6
59,643	-		IAI47_19160	0.80	-2.6
59,643	-		IAI47_19160	0.80	+0.2
59,644	+		IAI47_19160	0.80	-0.7
59,644	+		IAI47_19160	0.80	+1.1
59,644	+		IAI47_19160	0.80	+1.9
59,644	+		IAI47_19160	0.80	-0.9
59,644	+		IAI47_19160	0.80	+1.1
59,644	+		IAI47_19160	0.80	+1.3
59,644	+		IAI47_19160	0.80	+1.3
59,644	+		IAI47_19160	0.80	-0.0
59,644	+		IAI47_19160	0.80	+1.1
59,644	+		IAI47_19160	0.80	-1.2
59,644	+		IAI47_19160	0.80	-2.2
59,644	+		IAI47_19160	0.80	-0.0
59,644	+		IAI47_19160	0.80	-0.1
59,644	+		IAI47_19160	0.80	-1.1
59,644	+		IAI47_19160	0.80	+0.3
59,644	+		IAI47_19160	0.80	+0.5
59,645	-		IAI47_19160	0.80	+1.0
59,645	-		IAI47_19160	0.80	+0.1
59,645	-		IAI47_19160	0.80	+0.8
59,645	-		IAI47_19160	0.80	-1.1
59,645	-		IAI47_19160	0.80	+0.8
59,645	-		IAI47_19160	0.80	-0.1
59,645	-		IAI47_19160	0.80	-1.2
59,645	-		IAI47_19160	0.80	-0.5
59,645	-		IAI47_19160	0.80	-0.3
59,645	-		IAI47_19160	0.80	+0.9
59,645	-		IAI47_19160	0.80	-0.3
59,645	-		IAI47_19160	0.80	-0.9
59,645	-		IAI47_19160	0.80	+0.6
59,645	-		IAI47_19160	0.80	+0.7
59,645	-		IAI47_19160	0.80	+0.3
59,645	-		IAI47_19160	0.80	+0.5
59,665	+		IAI47_19160	0.81	-1.3
59,665	+		IAI47_19160	0.81	-0.8
59,665	+		IAI47_19160	0.81	-0.6
59,665	+		IAI47_19160	0.81	+0.4
59,665	+		IAI47_19160	0.81	+1.3
59,666	-		IAI47_19160	0.81	+1.3
59,666	-		IAI47_19160	0.81	+0.6
59,666	-		IAI47_19160	0.81	+0.8
59,666	-		IAI47_19160	0.81	-1.0
59,666	-		IAI47_19160	0.81	-0.6
59,666	-		IAI47_19160	0.81	-1.6
59,719	+		IAI47_19160	0.85	+1.3
59,719	+		IAI47_19160	0.85	+1.3
59,720	-		IAI47_19160	0.85	+0.6
59,720	-		IAI47_19160	0.85	-2.0
59,729	-		IAI47_19160	0.85	-0.9
59,729	-		IAI47_19160	0.85	+0.4
59,753	+		IAI47_19160	0.87	-0.6
59,753	+		IAI47_19160	0.87	+1.0
59,753	+		IAI47_19160	0.87	+1.0
59,753	+		IAI47_19160	0.87	-2.5
59,754	-		IAI47_19160	0.87	+1.6
59,754	-		IAI47_19160	0.87	+0.2
59,756	+		IAI47_19160	0.87	-0.8
59,757	-		IAI47_19160	0.87	-1.0
59,757	-		IAI47_19160	0.87	-1.3
59,757	-		IAI47_19160	0.87	+1.2
59,757	-		IAI47_19160	0.87	+1.2
59,757	-		IAI47_19160	0.87	-0.7
59,757	-		IAI47_19160	0.87	-1.8
59,757	-		IAI47_19160	0.87	-0.8
59,757	-		IAI47_19160	0.87	-0.5
59,896	+				+1.0
59,896	+				+0.7
59,896	+				-0.6
59,896	+				+1.0
59,896	+				-0.3
59,897	-				+0.4
59,897	-				+1.6
59,897	-				+0.4
59,897	-				+1.3
59,897	-				+1.7
59,897	-				-1.7
59,909	-				-0.9
59,943	-				+0.5
59,960	+				+0.8
59,960	+				+2.4
59,960	+				-0.8
59,961	-				+0.8
59,970	+				-0.6
59,971	-				-0.7
59,971	-				+0.1
59,971	-				+0.5
60,023	+				+1.0
60,024	-				+0.8
60,024	-				-0.4
60,056	+				+0.3
60,056	+				+2.0
60,057	-				+0.4
60,057	-				-0.5
60,057	-				-0.5
60,103	+				+3.5
60,103	+				+0.4
60,103	+				-0.5
60,103	+				+1.0
60,103	+				-0.3
60,103	+				+0.1
60,103	+				-0.7
60,103	+				-0.8
60,103	+				-1.2
60,103	+				+1.0
60,103	+				+0.3
60,103	+				+1.3
60,104	-				+0.7
60,104	-				+1.7
60,104	-				+1.9
60,104	-				+1.4
60,104	-				+1.2
60,104	-				+0.7
60,104	-				-1.6
60,104	-				-1.5
60,104	-				+0.7
60,105	+				-0.4
60,105	+				-0.8
60,105	+				-0.8
60,105	+				-1.3
60,105	+				+0.3
60,105	+				+1.3
60,105	+				-0.3
60,105	+				-1.2
60,105	+				-1.3
60,105	+				+0.1
60,105	+				+2.7
60,105	+				+1.1
60,105	+				-1.9
60,105	+				+0.1
60,106	-				-0.5
60,106	-				+0.1
60,106	-				+1.4
60,106	-				-2.7
60,106	-				-1.2
60,106	-				-0.6
60,106	-				-0.4
60,106	-				+1.1
60,106	-				-0.6
60,106	-				-0.8
60,106	-				+1.1
60,106	-				-1.5
60,106	-				+0.4
60,114	+				-1.0
60,114	+				-0.7
60,115	-				+0.5
60,115	-				-1.8
60,115	-				+1.7
60,115	-				+0.0
60,115	-				+0.5
60,125	+				+1.5
60,126	-				-1.5
60,126	-				+0.2
60,128	+				-0.4
60,128	+				+1.0
60,128	+				+1.6
60,128	+				+0.8
60,128	+				-0.0
60,128	+				-0.7
60,129	-				-0.8
60,129	-				-0.4
60,129	-				-1.0
60,129	-				-1.1
60,132	-				-1.6
60,164	+				-0.8
60,165	-				-1.4
60,165	-				+0.1
60,165	-				-1.2
60,165	-				+0.8
60,175	-				+0.7
60,175	-				-0.4
60,226	-		IAI47_19165	0.11	-0.0
60,238	-		IAI47_19165	0.13	+0.9
60,241	+		IAI47_19165	0.14	+0.6
60,241	+		IAI47_19165	0.14	-1.3
60,241	+		IAI47_19165	0.14	+1.0
60,242	-		IAI47_19165	0.14	+0.4
60,242	-		IAI47_19165	0.14	+0.9
60,242	-		IAI47_19165	0.14	+1.1
60,242	-		IAI47_19165	0.14	-2.7
60,242	-		IAI47_19165	0.14	+1.1
60,242	-		IAI47_19165	0.14	-1.8
60,278	+		IAI47_19165	0.19	+1.2
60,279	-		IAI47_19165	0.20	+1.0
60,279	-		IAI47_19165	0.20	-0.7
60,287	+		IAI47_19165	0.21	+1.7
60,287	+		IAI47_19165	0.21	-1.1
60,287	+		IAI47_19165	0.21	+0.4
60,287	+		IAI47_19165	0.21	-0.4
60,288	-		IAI47_19165	0.21	+1.8
60,288	-		IAI47_19165	0.21	-0.3
60,288	-		IAI47_19165	0.21	-1.1
60,288	-		IAI47_19165	0.21	+1.7
60,291	+		IAI47_19165	0.22	-0.2
60,291	+		IAI47_19165	0.22	+0.5
60,291	+		IAI47_19165	0.22	-0.1
60,291	+		IAI47_19165	0.22	+0.9
60,291	+		IAI47_19165	0.22	+1.5
60,292	-		IAI47_19165	0.22	+0.2
60,292	-		IAI47_19165	0.22	+1.4
60,292	-		IAI47_19165	0.22	+2.0
60,292	-		IAI47_19165	0.22	+0.2
60,354	+		IAI47_19165	0.31	-1.1
60,358	+		IAI47_19165	0.32	+0.9
60,358	+		IAI47_19165	0.32	-1.0
60,358	+		IAI47_19165	0.32	-1.4
60,359	-		IAI47_19165	0.32	+0.6
60,359	-		IAI47_19165	0.32	+1.1
60,359	-		IAI47_19165	0.32	+0.6
60,359	-		IAI47_19165	0.32	+1.3
60,359	-		IAI47_19165	0.32	+0.0
60,359	-		IAI47_19165	0.32	-0.3
60,359	-		IAI47_19165	0.32	+0.6
60,360	+		IAI47_19165	0.32	+0.9
60,360	+		IAI47_19165	0.32	-1.0
60,361	-		IAI47_19165	0.33	+0.6
60,361	-		IAI47_19165	0.33	+0.1
60,361	-		IAI47_19165	0.33	+0.4
60,362	+		IAI47_19165	0.33	-2.2
60,362	+		IAI47_19165	0.33	+1.1
60,363	-		IAI47_19165	0.33	+2.1
60,420	+		IAI47_19165	0.42	+0.0
60,420	+		IAI47_19165	0.42	-0.1
60,420	+		IAI47_19165	0.42	-1.7
60,420	+		IAI47_19165	0.42	+0.1
60,421	-		IAI47_19165	0.42	-1.5
60,421	-		IAI47_19165	0.42	+1.2
60,470	-		IAI47_19165	0.50	-3.0
60,491	+		IAI47_19165	0.53	+2.1
60,491	+		IAI47_19165	0.53	+1.0
60,491	+		IAI47_19165	0.53	-1.4
60,491	+		IAI47_19165	0.53	-0.3
60,492	-		IAI47_19165	0.53	+0.3
60,492	-		IAI47_19165	0.53	-0.6
60,492	-		IAI47_19165	0.53	+0.7
60,492	-		IAI47_19165	0.53	+1.4
60,492	-		IAI47_19165	0.53	-0.9
60,492	-		IAI47_19165	0.53	+2.5
60,492	-		IAI47_19165	0.53	+0.5
60,494	+		IAI47_19165	0.53	-2.4
60,494	+		IAI47_19165	0.53	-2.2
60,494	+		IAI47_19165	0.53	+0.5
60,494	+		IAI47_19165	0.53	+0.0
60,495	-		IAI47_19165	0.54	+1.3
60,495	-		IAI47_19165	0.54	+1.1
60,495	-		IAI47_19165	0.54	-2.1
60,576	+		IAI47_19165	0.66	+1.1
60,576	+		IAI47_19165	0.66	-2.2
60,577	-		IAI47_19165	0.67	-1.2
60,582	+		IAI47_19165	0.67	-2.2
60,582	+		IAI47_19165	0.67	-2.4
60,589	+		IAI47_19165	0.68	+1.4
60,590	-		IAI47_19165	0.69	-0.0
60,590	-		IAI47_19165	0.69	+1.3
60,590	-		IAI47_19165	0.69	+1.8
60,592	+		IAI47_19165	0.69	-1.4
60,592	+		IAI47_19165	0.69	+0.2
60,592	+		IAI47_19165	0.69	-0.3
60,593	-		IAI47_19165	0.69	+0.5
60,593	-		IAI47_19165	0.69	-0.6
60,621	+		IAI47_19165	0.73	-0.1
60,621	+		IAI47_19165	0.73	+2.0
60,628	+		IAI47_19165	0.75	+0.8
60,628	+		IAI47_19165	0.75	+0.4
60,628	+		IAI47_19165	0.75	-1.6
60,629	-		IAI47_19165	0.75	+0.0
60,636	+		IAI47_19165	0.76	-0.2
60,636	+		IAI47_19165	0.76	-0.5
60,636	+		IAI47_19165	0.76	-0.6
60,636	+		IAI47_19165	0.76	+0.6
60,636	+		IAI47_19165	0.76	+2.0
60,637	-		IAI47_19165	0.76	-0.3
60,637	-		IAI47_19165	0.76	-1.5
60,637	-		IAI47_19165	0.76	-0.2
60,665	+		IAI47_19165	0.80	+0.6
60,665	+		IAI47_19165	0.80	-1.5
60,682	+		IAI47_19165	0.83	+1.1
60,684	+		IAI47_19165	0.83	+0.3
60,684	+		IAI47_19165	0.83	+0.6
60,684	+		IAI47_19165	0.83	-0.7
60,685	-		IAI47_19165	0.83	-0.2
60,685	-		IAI47_19165	0.83	-1.3
60,685	-		IAI47_19165	0.83	-1.0
60,685	-		IAI47_19165	0.83	+1.0
60,685	-		IAI47_19165	0.83	-0.0
60,712	+		IAI47_19165	0.88	-2.0
60,713	-		IAI47_19165	0.88	+1.7
60,758	+				-1.2
60,758	+				+0.8
60,758	+				-1.9
60,758	+				+0.3
60,759	-				+0.6
60,773	+				-0.7
60,774	-				-0.3
60,774	-				+0.9
60,774	-				+0.3
60,783	+				+0.6
60,784	-				-0.7
60,786	-				+1.8
60,786	-				+1.0
60,786	-				-0.8
60,792	+				-0.4
60,792	+				+2.6
60,793	-				+0.7
60,797	-				-1.7
60,797	-				+1.5
60,797	-				-1.7
60,812	-				+1.2
60,819	+				-1.4
60,819	+				-1.7
60,828	+				-0.7
60,828	+				+3.3
60,829	-				+0.2
60,829	-				+0.7
60,831	-				-1.1
60,880	-				+0.1
60,912	-				+2.6
60,917	+				-0.4
60,918	-				-2.0
60,918	-				-0.9
60,922	+				+2.0
60,922	+				-0.1
60,922	+				+0.6
60,923	-				-0.9
60,930	+				-0.7
60,930	+				-0.3
60,931	-				-0.0
60,931	-				+0.3
60,977	+				-1.0
60,978	-				+1.1
60,985	-				+2.5
60,985	-				+1.6
60,985	-				+2.0
61,003	+				-2.0
61,003	+				-0.1
61,004	-				+0.5
61,004	-				-0.5
61,017	+				+1.8
61,018	-				+0.3
61,020	+				-0.2
61,038	+				+1.8
61,038	+				+0.5
61,039	-				+0.5
61,039	-				+1.4
61,044	+				+0.0
61,044	+				-0.0
61,045	-				-2.3
61,045	-				+1.6
61,087	+				-0.1
61,094	+				+0.6
61,094	+				-1.8
61,094	+				-0.6
61,094	+				+0.1
61,094	+				-1.5
61,094	+				+1.1
61,094	+				+1.8
61,094	+				+0.4
61,095	-				-1.5
61,095	-				+0.5
61,095	-				-1.7
61,095	-				+0.6
61,095	-				-1.5
61,139	+		IAI47_19170	0.11	-1.0
61,140	-		IAI47_19170	0.11	+0.7
61,164	+		IAI47_19170	0.13	+0.1
61,164	+		IAI47_19170	0.13	+0.2
61,170	+		IAI47_19170	0.14	+0.5
61,170	+		IAI47_19170	0.14	+0.7
61,171	-		IAI47_19170	0.14	-2.0
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