Strain Fitness in Pantoea sp. MT58 around IAI47_17665

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,749,000	+		IAI47_17660	0.50	+1.5
3,749,000	+		IAI47_17660	0.50	+2.4
3,749,000	+		IAI47_17660	0.50	-0.0
3,749,000	+		IAI47_17660	0.50	+1.8
3,749,000	+		IAI47_17660	0.50	+1.1
3,749,000	+		IAI47_17660	0.50	+1.2
3,749,001	-		IAI47_17660	0.50	+3.3
3,749,050	+		IAI47_17660	0.53	+0.1
3,749,050	+		IAI47_17660	0.53	+1.1
3,749,050	+		IAI47_17660	0.53	+2.3
3,749,050	+		IAI47_17660	0.53	+2.1
3,749,050	+		IAI47_17660	0.53	+1.1
3,749,051	-		IAI47_17660	0.53	+1.9
3,749,051	-		IAI47_17660	0.53	+1.1
3,749,054	+		IAI47_17660	0.53	+0.9
3,749,054	+		IAI47_17660	0.53	+2.0
3,749,054	+		IAI47_17660	0.53	+1.9
3,749,054	+		IAI47_17660	0.53	+1.7
3,749,054	+		IAI47_17660	0.53	-0.0
3,749,054	+		IAI47_17660	0.53	-0.2
3,749,054	+		IAI47_17660	0.53	+0.6
3,749,054	+		IAI47_17660	0.53	+0.2
3,749,054	+		IAI47_17660	0.53	+2.2
3,749,054	+		IAI47_17660	0.53	+1.4
3,749,055	-		IAI47_17660	0.53	+1.0
3,749,055	-		IAI47_17660	0.53	+0.9
3,749,055	-		IAI47_17660	0.53	+0.4
3,749,055	-		IAI47_17660	0.53	+0.2
3,749,055	-		IAI47_17660	0.53	+1.6
3,749,055	-		IAI47_17660	0.53	+1.7
3,749,055	-		IAI47_17660	0.53	+1.5
3,749,055	-		IAI47_17660	0.53	+0.5
3,749,055	-		IAI47_17660	0.53	+2.7
3,749,055	-		IAI47_17660	0.53	+1.1
3,749,055	-		IAI47_17660	0.53	+0.9
3,749,055	-		IAI47_17660	0.53	+0.7
3,749,055	-		IAI47_17660	0.53	+0.7
3,749,055	-		IAI47_17660	0.53	+0.8
3,749,056	-		IAI47_17660	0.53	+0.1
3,749,107	-		IAI47_17660	0.56	+1.3
3,749,133	-		IAI47_17660	0.58	+1.0
3,749,133	-		IAI47_17660	0.58	+1.9
3,749,133	-		IAI47_17660	0.58	+0.7
3,749,133	-		IAI47_17660	0.58	+0.4
3,749,138	+		IAI47_17660	0.58	+0.9
3,749,138	+		IAI47_17660	0.58	+1.0
3,749,138	+		IAI47_17660	0.58	+1.8
3,749,138	+		IAI47_17660	0.58	+0.1
3,749,138	+		IAI47_17660	0.58	+0.9
3,749,138	+		IAI47_17660	0.58	+1.4
3,749,138	+		IAI47_17660	0.58	+2.8
3,749,138	+		IAI47_17660	0.58	+1.1
3,749,138	+		IAI47_17660	0.58	+0.4
3,749,138	+		IAI47_17660	0.58	+0.8
3,749,138	+		IAI47_17660	0.58	+1.5
3,749,138	+		IAI47_17660	0.58	+2.6
3,749,139	-		IAI47_17660	0.58	-0.7
3,749,139	-		IAI47_17660	0.58	+1.6
3,749,139	-		IAI47_17660	0.58	+2.6
3,749,139	-		IAI47_17660	0.58	+1.7
3,749,139	-		IAI47_17660	0.58	+0.5
3,749,139	-		IAI47_17660	0.58	-0.0
3,749,139	-		IAI47_17660	0.58	+2.0
3,749,139	-		IAI47_17660	0.58	+0.5
3,749,139	-		IAI47_17660	0.58	+1.0
3,749,195	+		IAI47_17660	0.61	+1.6
3,749,195	+		IAI47_17660	0.61	+0.7
3,749,195	+		IAI47_17660	0.61	+2.5
3,749,195	+		IAI47_17660	0.61	-0.0
3,749,195	+		IAI47_17660	0.61	+2.6
3,749,196	-		IAI47_17660	0.61	+0.3
3,749,196	-		IAI47_17660	0.61	+0.6
3,749,196	-		IAI47_17660	0.61	+2.0
3,749,196	-		IAI47_17660	0.61	+3.0
3,749,196	-		IAI47_17660	0.61	+0.5
3,749,196	-		IAI47_17660	0.61	-0.8
3,749,196	-		IAI47_17660	0.61	+2.3
3,749,196	-		IAI47_17660	0.61	+0.3
3,749,199	+		IAI47_17660	0.61	-0.2
3,749,199	+		IAI47_17660	0.61	+2.3
3,749,199	+		IAI47_17660	0.61	+1.5
3,749,199	+		IAI47_17660	0.61	+1.6
3,749,199	+		IAI47_17660	0.61	+1.8
3,749,199	+		IAI47_17660	0.61	-1.0
3,749,200	-		IAI47_17660	0.61	+0.1
3,749,200	-		IAI47_17660	0.61	+0.1
3,749,200	-		IAI47_17660	0.61	+2.1
3,749,200	-		IAI47_17660	0.61	+0.1
3,749,200	-		IAI47_17660	0.61	+1.3
3,749,200	-		IAI47_17660	0.61	+0.4
3,749,200	-		IAI47_17660	0.61	-0.6
3,749,200	-		IAI47_17660	0.61	+1.5
3,749,200	-		IAI47_17660	0.61	-1.7
3,749,200	-		IAI47_17660	0.61	+1.3
3,749,200	-		IAI47_17660	0.61	+1.2
3,749,207	+		IAI47_17660	0.62	+2.1
3,749,208	-		IAI47_17660	0.62	+0.4
3,749,208	-		IAI47_17660	0.62	+0.9
3,749,220	+		IAI47_17660	0.62	+2.3
3,749,220	+		IAI47_17660	0.62	+0.4
3,749,221	-		IAI47_17660	0.63	+0.9
3,749,221	-		IAI47_17660	0.63	+1.7
3,749,221	-		IAI47_17660	0.63	-0.5
3,749,240	+		IAI47_17660	0.64	+1.5
3,749,240	+		IAI47_17660	0.64	+3.0
3,749,240	+		IAI47_17660	0.64	+0.2
3,749,241	-		IAI47_17660	0.64	-0.0
3,749,241	-		IAI47_17660	0.64	+1.1
3,749,241	-		IAI47_17660	0.64	+1.1
3,749,241	-		IAI47_17660	0.64	+2.2
3,749,241	-		IAI47_17660	0.64	+0.5
3,749,250	-		IAI47_17660	0.64	-1.1
3,749,250	-		IAI47_17660	0.64	+1.0
3,749,291	+		IAI47_17660	0.66	+0.6
3,749,291	+		IAI47_17660	0.66	+1.5
3,749,291	+		IAI47_17660	0.66	+1.3
3,749,291	+		IAI47_17660	0.66	+0.6
3,749,292	-		IAI47_17660	0.66	+0.7
3,749,292	-		IAI47_17660	0.66	+1.3
3,749,292	-		IAI47_17660	0.66	+1.3
3,749,295	+		IAI47_17660	0.67	+0.7
3,749,295	+		IAI47_17660	0.67	-0.3
3,749,295	+		IAI47_17660	0.67	+2.0
3,749,295	+		IAI47_17660	0.67	+1.6
3,749,295	+		IAI47_17660	0.67	+0.7
3,749,295	+		IAI47_17660	0.67	+2.1
3,749,295	+		IAI47_17660	0.67	+2.8
3,749,295	+		IAI47_17660	0.67	+2.7
3,749,296	-		IAI47_17660	0.67	+2.1
3,749,296	-		IAI47_17660	0.67	+0.6
3,749,296	-		IAI47_17660	0.67	+2.3
3,749,322	+		IAI47_17660	0.68	+2.1
3,749,323	-		IAI47_17660	0.68	+1.2
3,749,323	-		IAI47_17660	0.68	+1.4
3,749,349	+		IAI47_17660	0.70	+1.4
3,749,358	+		IAI47_17660	0.70	-1.6
3,749,358	+		IAI47_17660	0.70	+1.4
3,749,359	-		IAI47_17660	0.70	+2.3
3,749,359	-		IAI47_17660	0.70	+1.5
3,749,359	-		IAI47_17660	0.70	+1.8
3,749,359	-		IAI47_17660	0.70	+0.1
3,749,359	-		IAI47_17660	0.70	+1.3
3,749,359	-		IAI47_17660	0.70	-1.7
3,749,359	-		IAI47_17660	0.70	+2.4
3,749,359	-		IAI47_17660	0.70	-0.2
3,749,376	+		IAI47_17660	0.71	+2.3
3,749,376	+		IAI47_17660	0.71	+1.7
3,749,377	-		IAI47_17660	0.71	+2.8
3,749,386	-		IAI47_17660	0.72	-0.2
3,749,386	-		IAI47_17660	0.72	+1.6
3,749,386	-		IAI47_17660	0.72	+0.8
3,749,453	+		IAI47_17660	0.76	+0.3
3,749,453	+		IAI47_17660	0.76	+1.3
3,749,453	+		IAI47_17660	0.76	+1.4
3,749,453	+		IAI47_17660	0.76	+1.4
3,749,453	+		IAI47_17660	0.76	-1.2
3,749,453	+		IAI47_17660	0.76	+1.9
3,749,503	-		IAI47_17660	0.78	+0.9
3,749,508	-		IAI47_17660	0.79	+0.6
3,749,519	+		IAI47_17660	0.79	+0.7
3,749,520	-		IAI47_17660	0.79	+1.5
3,749,520	-		IAI47_17660	0.79	+1.4
3,749,630	+		IAI47_17660	0.85	-1.0
3,749,631	-		IAI47_17660	0.85	+0.6
3,749,636	-		IAI47_17660	0.86	+0.9
3,749,712	+				+2.0
3,749,714	+				+0.7
3,749,714	+				-0.7
3,749,714	+				+2.4
3,749,714	+				+1.7
3,749,714	+				+1.5
3,749,714	+				+1.2
3,749,714	+				-0.5
3,749,714	+				-1.0
3,749,714	+				+1.2
3,749,714	+				+1.4
3,749,714	+				-0.6
3,749,714	+				+1.6
3,749,715	-				+0.2
3,749,715	-				+0.7
3,749,741	+				-0.1
3,749,756	+				+1.3
3,749,757	-				+0.4
3,749,757	-				+1.1
3,749,757	-				+1.1
3,749,760	+				+1.0
3,749,760	+				-0.9
3,749,760	+				+0.6
3,749,760	+				+0.5
3,749,761	-				+0.9
3,749,761	-				+0.6
3,749,761	-				-1.6
3,749,761	-				+1.3
3,749,761	-				+0.6
3,749,761	-				+1.5
3,749,761	-				+1.7
3,749,761	-				+2.3
3,749,761	-				+1.7
3,749,761	-				+0.7
3,749,791	+				+0.1
3,749,792	-				+0.4
3,749,792	-				+3.2
3,749,792	-				+1.1
3,749,792	-				+0.3
3,749,792	-				+1.0
3,749,792	-				+1.3
3,749,797	-				+3.2
3,749,797	-				+0.5
3,749,893	+				+1.9
3,749,893	+				+1.6
3,749,893	+				+3.0
3,749,893	+				-2.6
3,749,893	+				+2.1
3,749,893	+				+1.1
3,749,893	+				+1.3
3,749,893	+				+2.5
3,749,893	+				+2.0
3,749,893	+				+0.9
3,749,893	+				+1.2
3,749,893	+				+1.0
3,749,894	-				+2.4
3,749,894	-				+0.7
3,749,894	-				-0.5
3,749,894	-				+1.1
3,749,894	-				+2.0
3,749,894	-				+0.7
3,749,894	-				+0.4
3,749,894	-				+0.7
3,749,894	-				+1.1
3,749,960	+				+0.8
3,749,960	+				+0.8
3,749,960	+				+1.4
3,749,961	-				+1.6
3,750,029	+		IAI47_17665	0.19	+0.8
3,750,030	-		IAI47_17665	0.19	+1.6
3,750,030	-		IAI47_17665	0.19	+1.0
3,750,030	-		IAI47_17665	0.19	+1.7
3,750,030	-		IAI47_17665	0.19	-0.8
3,750,038	+		IAI47_17665	0.20	+2.4
3,750,039	-		IAI47_17665	0.20	+1.6
3,750,039	-		IAI47_17665	0.20	+0.4
3,750,135	+		IAI47_17665	0.33	+1.3
3,750,135	+		IAI47_17665	0.33	+0.2
3,750,135	+		IAI47_17665	0.33	+0.9
3,750,136	-		IAI47_17665	0.33	+1.4
3,750,136	-		IAI47_17665	0.33	+1.4
3,750,136	-		IAI47_17665	0.33	+0.5
3,750,196	+		IAI47_17665	0.41	+0.6
3,750,196	+		IAI47_17665	0.41	+0.8
3,750,197	-		IAI47_17665	0.41	+1.5
3,750,197	-		IAI47_17665	0.41	+1.6
3,750,197	-		IAI47_17665	0.41	-0.8
3,750,197	-		IAI47_17665	0.41	+0.6
3,750,200	+		IAI47_17665	0.42	+2.3
3,750,200	+		IAI47_17665	0.42	+1.7
3,750,201	-		IAI47_17665	0.42	+1.0
3,750,201	-		IAI47_17665	0.42	+0.2
3,750,226	+		IAI47_17665	0.45	+1.6
3,750,227	-		IAI47_17665	0.46	+2.4
3,750,284	+		IAI47_17665	0.53	+0.4
3,750,299	+		IAI47_17665	0.55	+0.2
3,750,299	+		IAI47_17665	0.55	+0.2
3,750,299	+		IAI47_17665	0.55	+1.3
3,750,299	+		IAI47_17665	0.55	-0.8
3,750,299	+		IAI47_17665	0.55	+4.1
3,750,299	+		IAI47_17665	0.55	+1.9
3,750,299	+		IAI47_17665	0.55	+2.1
3,750,299	+		IAI47_17665	0.55	+1.0
3,750,299	+		IAI47_17665	0.55	-0.0
3,750,299	+		IAI47_17665	0.55	-0.5
3,750,299	-		IAI47_17665	0.55	-0.0
3,750,300	-		IAI47_17665	0.56	+2.0
3,750,300	-		IAI47_17665	0.56	+0.5
3,750,300	-		IAI47_17665	0.56	-0.3
3,750,300	-		IAI47_17665	0.56	+1.7
3,750,300	-		IAI47_17665	0.56	+1.4
3,750,300	-		IAI47_17665	0.56	+1.1
3,750,300	-		IAI47_17665	0.56	+0.1
3,750,300	-		IAI47_17665	0.56	+0.9
3,750,300	-		IAI47_17665	0.56	+0.6
3,750,300	-		IAI47_17665	0.56	+0.9
3,750,300	-		IAI47_17665	0.56	+1.8
3,750,300	-		IAI47_17665	0.56	-0.4
3,750,300	-		IAI47_17665	0.56	+2.8
3,750,301	+		IAI47_17665	0.56	+0.4
3,750,301	+		IAI47_17665	0.56	+2.6
3,750,301	+		IAI47_17665	0.56	+0.4
3,750,301	+		IAI47_17665	0.56	+1.6
3,750,301	+		IAI47_17665	0.56	+1.2
3,750,301	+		IAI47_17665	0.56	+0.4
3,750,301	+		IAI47_17665	0.56	+0.7
3,750,301	+		IAI47_17665	0.56	+1.1
3,750,301	+		IAI47_17665	0.56	-0.2
3,750,301	+		IAI47_17665	0.56	+2.3
3,750,301	+		IAI47_17665	0.56	+1.2
3,750,302	-		IAI47_17665	0.56	+1.0
3,750,302	-		IAI47_17665	0.56	+0.7
3,750,302	-		IAI47_17665	0.56	+0.9
3,750,302	-		IAI47_17665	0.56	+2.4
3,750,323	-		IAI47_17665	0.59	+1.2
3,750,323	-		IAI47_17665	0.59	+0.2
3,750,329	+		IAI47_17665	0.59	+1.1
3,750,329	+		IAI47_17665	0.59	+1.2
3,750,330	-		IAI47_17665	0.60	+1.9
3,750,330	-		IAI47_17665	0.60	+0.6
3,750,423	-		IAI47_17665	0.72	+2.2
3,750,423	-		IAI47_17665	0.72	+1.7
3,750,425	+		IAI47_17665	0.73	+1.7
3,750,426	-		IAI47_17665	0.73	-0.2
3,750,463	+		IAI47_17665	0.78	+1.8
3,750,572	+				+0.8
3,750,572	+				+1.1
3,750,573	-				-0.0
3,750,682	+				+1.8
3,750,682	+				+4.2
3,750,682	+				+1.1
3,750,683	-				-0.9
3,750,683	-				+0.6
3,750,683	-				-2.5
3,750,692	+				+1.7
3,750,702	+				+1.5
3,750,702	+				+1.2
3,750,703	-				+0.2
3,750,703	-				+1.2
3,750,703	-				-0.1
3,750,703	-				-3.2
3,750,743	+				-0.2
3,750,743	+				+0.5
3,750,743	+				+1.3
3,750,743	+				+1.5
3,750,743	+				+1.0
3,750,743	+				+1.0
3,750,743	+				+0.6
3,750,743	+				+1.7
3,750,743	+				+2.6
3,750,743	+				+0.5
3,750,744	-				+1.0
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