Strain Fitness in Pantoea sp. MT58 around IAI47_12680

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,665,065	+		IAI47_12675	0.39	+0.6
2,665,072	+		IAI47_12675	0.39	-1.3
2,665,079	+		IAI47_12675	0.40	-0.0
2,665,079	+				+0.6
2,665,079	+		IAI47_12675	0.40	+0.7
2,665,079	+		IAI47_12675	0.40	+1.0
2,665,080	-		IAI47_12675	0.40	+1.5
2,665,143	-		IAI47_12675	0.43	-0.7
2,665,143	-		IAI47_12675	0.43	-1.0
2,665,207	+		IAI47_12675	0.47	-0.7
2,665,207	+		IAI47_12675	0.47	-1.4
2,665,208	-		IAI47_12675	0.47	-1.6
2,665,208	-		IAI47_12675	0.47	-0.5
2,665,208	-		IAI47_12675	0.47	-0.5
2,665,214	+		IAI47_12675	0.48	+0.4
2,665,214	+		IAI47_12675	0.48	+1.5
2,665,214	+		IAI47_12675	0.48	-0.8
2,665,214	+		IAI47_12675	0.48	-1.2
2,665,214	+		IAI47_12675	0.48	-1.6
2,665,215	-		IAI47_12675	0.48	+0.5
2,665,215	-		IAI47_12675	0.48	-1.7
2,665,215	-		IAI47_12675	0.48	+0.5
2,665,215	-		IAI47_12675	0.48	-1.0
2,665,215	-		IAI47_12675	0.48	-1.3
2,665,215	-		IAI47_12675	0.48	-1.2
2,665,223	+		IAI47_12675	0.48	+0.5
2,665,223	+		IAI47_12675	0.48	+0.7
2,665,224	-		IAI47_12675	0.48	+2.1
2,665,224	-		IAI47_12675	0.48	-1.6
2,665,225	+		IAI47_12675	0.48	+0.6
2,665,225	+		IAI47_12675	0.48	+0.6
2,665,225	+		IAI47_12675	0.48	+0.0
2,665,225	+		IAI47_12675	0.48	-0.7
2,665,226	-		IAI47_12675	0.48	+0.8
2,665,226	-		IAI47_12675	0.48	-0.7
2,665,226	-		IAI47_12675	0.48	-0.8
2,665,226	-		IAI47_12675	0.48	-0.2
2,665,226	-		IAI47_12675	0.48	+0.3
2,665,226	-		IAI47_12675	0.48	-1.0
2,665,241	+		IAI47_12675	0.49	+1.2
2,665,242	-		IAI47_12675	0.49	+1.3
2,665,268	+		IAI47_12675	0.51	-1.0
2,665,268	-		IAI47_12675	0.51	+0.4
2,665,389	-		IAI47_12675	0.58	+1.4
2,665,389	-		IAI47_12675	0.58	+0.8
2,665,389	-		IAI47_12675	0.58	-2.5
2,665,389	-		IAI47_12675	0.58	-1.1
2,665,389	-		IAI47_12675	0.58	-2.2
2,665,391	-		IAI47_12675	0.59	+0.5
2,665,448	-		IAI47_12675	0.62	+2.4
2,665,448	-		IAI47_12675	0.62	+0.8
2,665,471	+		IAI47_12675	0.63	+0.4
2,665,471	+		IAI47_12675	0.63	-0.6
2,665,471	+		IAI47_12675	0.63	-1.0
2,665,471	+		IAI47_12675	0.63	+1.0
2,665,471	+		IAI47_12675	0.63	-0.4
2,665,471	+		IAI47_12675	0.63	+0.2
2,665,471	+		IAI47_12675	0.63	-0.2
2,665,471	+		IAI47_12675	0.63	+0.3
2,665,472	-		IAI47_12675	0.63	+0.0
2,665,472	-		IAI47_12675	0.63	+2.4
2,665,472	-		IAI47_12675	0.63	+1.6
2,665,472	-		IAI47_12675	0.63	-1.2
2,665,472	-		IAI47_12675	0.63	-0.6
2,665,472	-		IAI47_12675	0.63	+1.1
2,665,481	+		IAI47_12675	0.64	+0.2
2,665,481	+		IAI47_12675	0.64	+1.1
2,665,481	+		IAI47_12675	0.64	-1.4
2,665,481	+		IAI47_12675	0.64	+0.6
2,665,481	+		IAI47_12675	0.64	+0.4
2,665,481	+		IAI47_12675	0.64	+1.3
2,665,482	-		IAI47_12675	0.64	+1.8
2,665,482	-		IAI47_12675	0.64	-0.9
2,665,482	-		IAI47_12675	0.64	-0.8
2,665,482	-		IAI47_12675	0.64	+1.5
2,665,482	-		IAI47_12675	0.64	-0.7
2,665,482	-		IAI47_12675	0.64	-1.0
2,665,482	-		IAI47_12675	0.64	-3.0
2,665,482	-		IAI47_12675	0.64	-1.0
2,665,482	-		IAI47_12675	0.64	+1.0
2,665,487	+		IAI47_12675	0.64	+0.6
2,665,488	-		IAI47_12675	0.64	-0.1
2,665,493	+		IAI47_12675	0.65	+0.0
2,665,494	-		IAI47_12675	0.65	-0.2
2,665,517	+		IAI47_12675	0.66	-1.1
2,665,559	+		IAI47_12675	0.69	-0.6
2,665,560	-		IAI47_12675	0.69	-0.9
2,665,589	+		IAI47_12675	0.71	+1.7
2,665,590	-		IAI47_12675	0.71	-2.9
2,665,590	-		IAI47_12675	0.71	-0.5
2,665,598	+		IAI47_12675	0.71	-1.1
2,665,643	+		IAI47_12675	0.74	+0.3
2,665,644	-		IAI47_12675	0.74	+1.8
2,665,644	-		IAI47_12675	0.74	-0.4
2,665,644	-		IAI47_12675	0.74	-0.7
2,665,681	-		IAI47_12675	0.76	-0.1
2,665,690	+		IAI47_12675	0.77	+1.3
2,665,690	+		IAI47_12675	0.77	-2.4
2,665,690	+		IAI47_12675	0.77	-3.0
2,665,691	-		IAI47_12675	0.77	+0.6
2,665,691	-		IAI47_12675	0.77	-0.7
2,665,691	-		IAI47_12675	0.77	+0.6
2,665,691	-		IAI47_12675	0.77	-1.0
2,665,738	-		IAI47_12675	0.80	-1.4
2,665,772	+		IAI47_12675	0.82	+1.7
2,665,772	+		IAI47_12675	0.82	+0.1
2,665,772	+		IAI47_12675	0.82	+0.3
2,665,773	-		IAI47_12675	0.82	-1.4
2,665,773	-		IAI47_12675	0.82	+1.0
2,665,799	+		IAI47_12675	0.83	-0.4
2,665,800	-		IAI47_12675	0.83	-1.9
2,665,800	-		IAI47_12675	0.83	+0.4
2,665,811	+		IAI47_12675	0.84	-1.2
2,665,818	+		IAI47_12675	0.84	-1.1
2,665,819	-		IAI47_12675	0.85	+0.7
2,665,840	-		IAI47_12675	0.86	+2.0
2,665,840	-		IAI47_12675	0.86	+0.5
2,665,840	-		IAI47_12675	0.86	-0.7
2,665,883	+		IAI47_12675	0.88	+0.4
2,665,884	-		IAI47_12675	0.89	-0.3
2,665,895	+		IAI47_12675	0.89	-2.4
2,665,929	+				+0.3
2,665,929	+				-0.7
2,665,929	+				+0.7
2,665,929	+				+3.2
2,665,963	+				+0.1
2,665,963	+				+0.2
2,665,964	-				-0.3
2,665,964	-				-1.0
2,665,964	-				+1.8
2,665,986	+				-1.7
2,665,986	+				-1.3
2,665,987	-				-1.3
2,665,987	-				+0.3
2,665,987	-				-1.7
2,665,994	+				-1.3
2,666,030	+				-0.5
2,666,031	-				+0.8
2,666,031	-				+1.4
2,666,089	-				-1.0
2,666,089	-				+2.1
2,666,116	+				+0.5
2,666,154	+				+1.4
2,666,154	+				+0.2
2,666,155	-				-0.4
2,666,155	-				+1.5
2,666,177	-				+1.2
2,666,177	-				+0.6
2,666,206	+		IAI47_12680	0.12	-1.7
2,666,206	+		IAI47_12680	0.12	+1.8
2,666,207	-		IAI47_12680	0.12	+2.8
2,666,207	-		IAI47_12680	0.12	+1.6
2,666,207	-		IAI47_12680	0.12	+1.2
2,666,207	-		IAI47_12680	0.12	+1.6
2,666,207	-		IAI47_12680	0.12	-1.3
2,666,218	-		IAI47_12680	0.13	-2.3
2,666,374	+		IAI47_12680	0.25	+1.1
2,666,375	-		IAI47_12680	0.25	+0.4
2,666,379	+		IAI47_12680	0.25	-0.3
2,666,380	-		IAI47_12680	0.25	+1.5
2,666,388	+		IAI47_12680	0.26	-0.3
2,666,388	+		IAI47_12680	0.26	+0.1
2,666,388	+		IAI47_12680	0.26	-1.0
2,666,388	+		IAI47_12680	0.26	+2.0
2,666,389	-		IAI47_12680	0.26	-0.2
2,666,389	-		IAI47_12680	0.26	-0.4
2,666,389	-		IAI47_12680	0.26	-0.7
2,666,389	-		IAI47_12680	0.26	+0.9
2,666,389	-		IAI47_12680	0.26	-0.1
2,666,460	+		IAI47_12680	0.32	+0.1
2,666,460	+		IAI47_12680	0.32	+1.1
2,666,460	+		IAI47_12680	0.32	-0.5
2,666,463	+		IAI47_12680	0.32	+0.5
2,666,463	+		IAI47_12680	0.32	-0.1
2,666,463	+		IAI47_12680	0.32	+0.2
2,666,463	+		IAI47_12680	0.32	-1.2
2,666,463	+		IAI47_12680	0.32	-0.1
2,666,464	-		IAI47_12680	0.32	-1.1
2,666,464	-		IAI47_12680	0.32	+0.5
2,666,466	+		IAI47_12680	0.32	+0.2
2,666,466	+		IAI47_12680	0.32	-1.1
2,666,466	+		IAI47_12680	0.32	-0.3
2,666,466	+		IAI47_12680	0.32	-1.6
2,666,467	-		IAI47_12680	0.32	+0.5
2,666,467	-		IAI47_12680	0.32	+0.4
2,666,526	+		IAI47_12680	0.37	-0.5
2,666,528	+		IAI47_12680	0.37	-0.9
2,666,528	+		IAI47_12680	0.37	-1.7
2,666,528	+		IAI47_12680	0.37	-1.3
2,666,528	+		IAI47_12680	0.37	-0.9
2,666,528	+		IAI47_12680	0.37	+0.2
2,666,528	+		IAI47_12680	0.37	-1.2
2,666,528	+		IAI47_12680	0.37	+1.0
2,666,528	+		IAI47_12680	0.37	-0.5
2,666,529	-		IAI47_12680	0.37	+0.2
2,666,529	-		IAI47_12680	0.37	-0.7
2,666,529	-		IAI47_12680	0.37	+3.4
2,666,529	-		IAI47_12680	0.37	-0.7
2,666,529	-		IAI47_12680	0.37	-1.6
2,666,529	-		IAI47_12680	0.37	+2.5
2,666,529	-		IAI47_12680	0.37	-0.8
2,666,529	-		IAI47_12680	0.37	-1.2
2,666,529	-		IAI47_12680	0.37	-0.4
2,666,529	-		IAI47_12680	0.37	-1.0
2,666,529	-		IAI47_12680	0.37	-0.8
2,666,536	+		IAI47_12680	0.38	-0.7
2,666,537	-		IAI47_12680	0.38	-0.1
2,666,537	-		IAI47_12680	0.38	+0.2
2,666,537	-		IAI47_12680	0.38	-0.8
2,666,544	+		IAI47_12680	0.38	-1.5
2,666,599	+		IAI47_12680	0.43	-1.4
2,666,619	+		IAI47_12680	0.44	-1.6
2,666,619	+		IAI47_12680	0.44	-0.6
2,666,619	+		IAI47_12680	0.44	+0.3
2,666,619	+		IAI47_12680	0.44	+1.3
2,666,620	-		IAI47_12680	0.44	+0.6
2,666,620	-		IAI47_12680	0.44	-1.3
2,666,620	-		IAI47_12680	0.44	-0.1
2,666,620	-		IAI47_12680	0.44	+0.2
2,666,620	-		IAI47_12680	0.44	-0.9
2,666,620	-		IAI47_12680	0.44	-2.2
2,666,620	-		IAI47_12680	0.44	+0.2
2,666,620	-		IAI47_12680	0.44	+0.1
2,666,620	-		IAI47_12680	0.44	-0.7
2,666,620	-		IAI47_12680	0.44	-0.4
2,666,620	-		IAI47_12680	0.44	-2.9
2,666,620	-		IAI47_12680	0.44	+0.2
2,666,646	+		IAI47_12680	0.46	-1.0
2,666,647	-		IAI47_12680	0.46	-1.8
2,666,647	-		IAI47_12680	0.46	-1.5
2,666,677	+		IAI47_12680	0.49	-2.0
2,666,677	+		IAI47_12680	0.49	+1.1
2,666,678	-		IAI47_12680	0.49	+0.4
2,666,711	-		IAI47_12680	0.51	-1.5
2,666,780	-		IAI47_12680	0.57	+0.6
2,666,835	-		IAI47_12680	0.61	-0.1
2,666,835	-		IAI47_12680	0.61	-0.1
2,666,835	-		IAI47_12680	0.61	-1.5
2,666,835	-		IAI47_12680	0.61	+0.1
2,666,898	+		IAI47_12680	0.66	+0.4
2,666,899	-		IAI47_12680	0.66	+1.0
2,666,899	-		IAI47_12680	0.66	-0.7
2,666,899	-		IAI47_12680	0.66	-1.2
2,666,899	-		IAI47_12680	0.66	+0.0
2,666,935	-		IAI47_12680	0.69	+0.6
2,666,971	+		IAI47_12680	0.72	+0.2
2,666,971	+		IAI47_12680	0.72	+0.1
2,666,971	+		IAI47_12680	0.72	-0.7
2,666,971	+		IAI47_12680	0.72	+0.2
2,666,971	+		IAI47_12680	0.72	+0.3
2,666,971	+		IAI47_12680	0.72	+0.5
2,666,971	+		IAI47_12680	0.72	+0.5
2,666,971	+		IAI47_12680	0.72	+0.0
2,666,972	-		IAI47_12680	0.72	-1.9
2,666,972	-		IAI47_12680	0.72	+0.7
2,666,972	-		IAI47_12680	0.72	-1.2
2,666,972	-		IAI47_12680	0.72	-0.9
2,666,972	-		IAI47_12680	0.72	-1.1
2,666,972	-		IAI47_12680	0.72	-1.4
2,666,973	+		IAI47_12680	0.72	-0.5
2,666,973	+		IAI47_12680	0.72	+0.7
2,666,973	+		IAI47_12680	0.72	-1.9
2,666,973	+		IAI47_12680	0.72	-1.0
2,666,974	-		IAI47_12680	0.72	-0.5
2,666,974	-		IAI47_12680	0.72	-2.0
2,666,974	-		IAI47_12680	0.72	-1.1
2,667,041	+		IAI47_12680	0.77	-0.8
2,667,041	+		IAI47_12680	0.77	-0.1
2,667,082	-		IAI47_12680	0.81	+0.1
2,667,147	+		IAI47_12680	0.86	+0.6
2,667,147	+		IAI47_12680	0.86	+1.5
2,667,148	-		IAI47_12680	0.86	+0.7
2,667,167	+		IAI47_12680	0.87	+0.2
2,667,268	-				-0.8
2,667,268	-				-1.1
2,667,274	+				-1.1
2,667,274	+				-0.8
2,667,275	-				+0.5
2,667,275	-				-0.2
2,667,275	-				-0.8
2,667,275	-				-0.0
2,667,296	-				-0.9
2,667,296	-				+1.0
2,667,343	+				-1.1
2,667,344	-				-0.3
2,667,344	-				+0.1
2,667,344	-				-1.6
2,667,559	+		IAI47_12685	0.11	-1.4
2,667,559	+		IAI47_12685	0.11	-2.0
2,667,560	-		IAI47_12685	0.11	-0.3
2,667,569	+		IAI47_12685	0.12	-1.7
2,667,569	+		IAI47_12685	0.12	+0.7
2,667,573	+		IAI47_12685	0.12	+0.9
2,667,573	+		IAI47_12685	0.12	+0.8
2,667,574	-		IAI47_12685	0.12	-0.9
2,667,578	+		IAI47_12685	0.12	-1.0
2,667,611	+		IAI47_12685	0.14	-0.0
2,667,661	+		IAI47_12685	0.17	+1.8
2,667,662	-		IAI47_12685	0.17	+1.8
2,667,752	+		IAI47_12685	0.21	-0.1
2,667,753	-		IAI47_12685	0.21	+0.3
2,667,753	-		IAI47_12685	0.21	+0.2
2,667,786	+		IAI47_12685	0.23	-0.7
2,667,786	+		IAI47_12685	0.23	-0.7
2,667,786	+		IAI47_12685	0.23	-1.5
2,667,813	-		IAI47_12685	0.25	+0.2
2,667,920	+		IAI47_12685	0.30	+1.0
2,667,920	+		IAI47_12685	0.30	+0.1
2,667,921	-		IAI47_12685	0.30	+0.2
2,667,991	+		IAI47_12685	0.34	-2.5
2,667,991	+		IAI47_12685	0.34	+0.4
2,667,991	+		IAI47_12685	0.34	+3.2
2,667,991	+		IAI47_12685	0.34	+0.5
2,668,102	+		IAI47_12685	0.40	-0.6
2,668,103	-		IAI47_12685	0.40	-1.1
2,668,152	+		IAI47_12685	0.42	+0.1
2,668,176	+		IAI47_12685	0.44	-1.5
2,668,176	+		IAI47_12685	0.44	+0.8
2,668,176	+		IAI47_12685	0.44	+1.2
2,668,176	+		IAI47_12685	0.44	-1.1
2,668,177	-		IAI47_12685	0.44	+0.3
2,668,177	-		IAI47_12685	0.44	+1.1
2,668,177	-		IAI47_12685	0.44	-0.4
2,668,177	-		IAI47_12685	0.44	-1.5
2,668,279	+		IAI47_12685	0.49	+0.3
2,668,280	-		IAI47_12685	0.49	-1.3