Strain Fitness in Pantoea sp. MT58 around IAI47_12565

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,644,589	+		IAI47_12560	0.35	+0.2
2,644,589	+		IAI47_12560	0.35	-1.9
2,644,589	+		IAI47_12560	0.35	-1.4
2,644,589	+		IAI47_12560	0.35	-0.6
2,644,590	+		IAI47_12560	0.35	+0.7
2,644,590	-		IAI47_12560	0.35	+1.1
2,644,590	-		IAI47_12560	0.35	+1.5
2,644,670	+		IAI47_12560	0.41	+0.3
2,644,671	-		IAI47_12560	0.41	+1.2
2,644,671	-		IAI47_12560	0.41	+0.3
2,644,671	-		IAI47_12560	0.41	+0.7
2,644,671	-		IAI47_12560	0.41	+0.8
2,644,671	-		IAI47_12560	0.41	-0.8
2,644,671	-		IAI47_12560	0.41	-0.8
2,644,672	+		IAI47_12560	0.41	-1.1
2,644,673	-		IAI47_12560	0.41	+1.5
2,644,775	+		IAI47_12560	0.48	-1.4
2,644,776	-		IAI47_12560	0.48	+1.2
2,644,776	-		IAI47_12560	0.48	+1.1
2,644,776	-		IAI47_12560	0.48	+0.7
2,644,779	+		IAI47_12560	0.48	+0.0
2,644,779	+		IAI47_12560	0.48	+0.2
2,644,779	+		IAI47_12560	0.48	+1.3
2,644,779	+		IAI47_12560	0.48	+0.2
2,644,779	+		IAI47_12560	0.48	-0.6
2,644,779	+		IAI47_12560	0.48	+2.1
2,644,780	-		IAI47_12560	0.49	-1.2
2,644,780	-		IAI47_12560	0.49	+0.3
2,644,780	-		IAI47_12560	0.49	-0.9
2,644,780	-		IAI47_12560	0.49	-2.4
2,644,780	-		IAI47_12560	0.49	-0.9
2,644,785	-		IAI47_12560	0.49	+1.9
2,644,922	+		IAI47_12560	0.59	-0.5
2,644,923	-		IAI47_12560	0.59	+2.0
2,644,927	+		IAI47_12560	0.59	-0.3
2,644,927	+		IAI47_12560	0.59	-1.7
2,644,928	-		IAI47_12560	0.59	+1.4
2,644,928	-		IAI47_12560	0.59	+0.2
2,644,928	-		IAI47_12560	0.59	-0.0
2,644,953	-		IAI47_12560	0.61	-1.2
2,645,139	+		IAI47_12560	0.75	-0.3
2,645,139	+		IAI47_12560	0.75	-1.2
2,645,139	+		IAI47_12560	0.75	-0.1
2,645,140	-		IAI47_12560	0.75	-0.9
2,645,140	-		IAI47_12560	0.75	+1.5
2,645,140	-		IAI47_12560	0.75	-0.1
2,645,184	+		IAI47_12560	0.78	+0.1
2,645,184	+		IAI47_12560	0.78	+0.2
2,645,184	+		IAI47_12560	0.78	+1.4
2,645,184	+		IAI47_12560	0.78	-0.6
2,645,185	-		IAI47_12560	0.78	-1.7
2,645,185	-		IAI47_12560	0.78	+1.4
2,645,187	+		IAI47_12560	0.78	+0.3
2,645,187	+		IAI47_12560	0.78	-0.6
2,645,188	-		IAI47_12560	0.78	-2.7
2,645,221	-		IAI47_12560	0.81	-1.2
2,645,221	-		IAI47_12560	0.81	+0.8
2,645,221	-		IAI47_12560	0.81	+0.1
2,645,221	-		IAI47_12560	0.81	+1.5
2,645,221	-		IAI47_12560	0.81	-1.8
2,645,271	+		IAI47_12560	0.84	+0.8
2,645,271	+		IAI47_12560	0.84	-1.3
2,645,272	-		IAI47_12560	0.84	+1.2
2,645,272	-		IAI47_12560	0.84	+0.8
2,645,318	+		IAI47_12560	0.88	+0.5
2,645,318	+		IAI47_12560	0.88	-1.1
2,645,319	-		IAI47_12560	0.88	+1.9
2,645,319	-		IAI47_12560	0.88	-2.3
2,645,415	+				+0.8
2,645,415	+				-0.5
2,645,415	+				+1.5
2,645,441	+				-0.8
2,645,501	+				-0.8
2,645,502	-				+2.1
2,645,530	+				-2.0
2,645,530	+				-0.7
2,645,531	-				-0.1
2,645,531	-				-3.0
2,645,531	-				+1.2
2,645,534	-				-1.3
2,645,534	-				-0.4
2,645,534	-				-0.2
2,645,543	+				+0.2
2,645,544	-				+0.8
2,645,544	-				+0.4
2,645,544	-				-1.2
2,645,544	-				+0.3
2,645,554	+				-0.3
2,645,554	+				-0.2
2,645,554	+				+0.9
2,645,555	-				+0.7
2,645,555	-				+0.8
2,645,555	-				-2.8
2,645,555	-				+1.0
2,645,609	+				-1.2
2,645,610	-				-0.2
2,645,714	+				+0.9
2,645,714	+				-0.3
2,645,714	+				+0.2
2,645,715	-				+0.5
2,645,715	-				+1.4
2,645,766	-		IAI47_12565	0.13	-1.9
2,645,766	-		IAI47_12565	0.13	+0.2
2,645,766	-		IAI47_12565	0.13	+0.6
2,645,847	-		IAI47_12565	0.18	+0.4
2,646,094	+		IAI47_12565	0.33	-1.5
2,646,095	-		IAI47_12565	0.33	+1.0
2,646,095	-		IAI47_12565	0.33	-0.6
2,646,100	+		IAI47_12565	0.34	-0.3
2,646,100	+		IAI47_12565	0.34	-2.5
2,646,100	+		IAI47_12565	0.34	+0.2
2,646,100	+		IAI47_12565	0.34	-2.1
2,646,100	+		IAI47_12565	0.34	-0.4
2,646,100	+		IAI47_12565	0.34	-1.3
2,646,100	+		IAI47_12565	0.34	-1.0
2,646,100	+		IAI47_12565	0.34	-2.7
2,646,100	+		IAI47_12565	0.34	-1.6
2,646,100	+		IAI47_12565	0.34	-1.9
2,646,100	+		IAI47_12565	0.34	+3.6
2,646,101	-		IAI47_12565	0.34	-3.3
2,646,101	-		IAI47_12565	0.34	-3.2
2,646,101	-		IAI47_12565	0.34	-0.1
2,646,101	-		IAI47_12565	0.34	-1.5
2,646,101	-		IAI47_12565	0.34	-1.4
2,646,184	+		IAI47_12565	0.39	-1.3
2,646,184	+		IAI47_12565	0.39	-1.7
2,646,185	-		IAI47_12565	0.39	-2.5
2,646,185	-		IAI47_12565	0.39	-2.2
2,646,185	-		IAI47_12565	0.39	+0.4
2,646,188	+		IAI47_12565	0.39	-1.0
2,646,202	+		IAI47_12565	0.40	-0.4
2,646,202	+		IAI47_12565	0.40	-1.3
2,646,202	+		IAI47_12565	0.40	-1.7
2,646,203	-		IAI47_12565	0.40	+0.1
2,646,203	-		IAI47_12565	0.40	-1.7
2,646,203	-		IAI47_12565	0.40	-2.9
2,646,203	-		IAI47_12565	0.40	-1.6
2,646,203	-		IAI47_12565	0.40	-1.3
2,646,281	+		IAI47_12565	0.45	-0.4
2,646,282	-		IAI47_12565	0.45	-1.2
2,646,282	-		IAI47_12565	0.45	+0.1
2,646,300	+		IAI47_12565	0.46	-0.5
2,646,316	+		IAI47_12565	0.47	-0.9
2,646,316	+		IAI47_12565	0.47	-0.1
2,646,316	+		IAI47_12565	0.47	-2.3
2,646,316	+		IAI47_12565	0.47	-1.4
2,646,316	+		IAI47_12565	0.47	+0.9
2,646,316	+		IAI47_12565	0.47	-2.2
2,646,317	-		IAI47_12565	0.47	-2.6
2,646,466	+		IAI47_12565	0.56	-2.4
2,646,466	+		IAI47_12565	0.56	-2.4
2,646,466	+		IAI47_12565	0.56	-1.6
2,646,466	+		IAI47_12565	0.56	+0.3
2,646,466	+		IAI47_12565	0.56	-2.1
2,646,466	+		IAI47_12565	0.56	+0.9
2,646,466	+		IAI47_12565	0.56	-2.0
2,646,467	-		IAI47_12565	0.56	+0.6
2,646,467	-		IAI47_12565	0.56	-1.0
2,646,467	-		IAI47_12565	0.56	-1.2
2,646,467	-		IAI47_12565	0.56	+0.0
2,646,467	-		IAI47_12565	0.56	-1.9
2,646,469	+		IAI47_12565	0.56	+0.2
2,646,469	+		IAI47_12565	0.56	+0.0
2,646,470	-		IAI47_12565	0.56	+0.1
2,646,470	-		IAI47_12565	0.56	-0.8
2,646,480	-		IAI47_12565	0.57	-0.7
2,646,480	-		IAI47_12565	0.57	-0.8
2,646,480	-		IAI47_12565	0.57	-0.7
2,646,500	+		IAI47_12565	0.58	-0.1
2,646,591	-		IAI47_12565	0.64	-0.6
2,646,591	-		IAI47_12565	0.64	+0.2
2,646,591	-		IAI47_12565	0.64	-0.3
2,646,614	+		IAI47_12565	0.65	+0.0
2,646,614	+		IAI47_12565	0.65	-2.8
2,646,615	-		IAI47_12565	0.65	-3.7
2,646,615	-		IAI47_12565	0.65	+0.8
2,646,615	-		IAI47_12565	0.65	-1.3
2,646,702	-		IAI47_12565	0.70	-0.2
2,646,737	+		IAI47_12565	0.73	-2.4
2,646,738	-		IAI47_12565	0.73	+1.2
2,646,743	+		IAI47_12565	0.73	-0.8
2,646,743	+		IAI47_12565	0.73	+1.1
2,646,743	+		IAI47_12565	0.73	-0.4
2,646,743	+		IAI47_12565	0.73	-0.8
2,646,744	-		IAI47_12565	0.73	-1.6
2,646,744	-		IAI47_12565	0.73	-1.6
2,646,744	-		IAI47_12565	0.73	+0.9
2,646,744	-		IAI47_12565	0.73	-1.5
2,646,744	-		IAI47_12565	0.73	-0.4
2,646,810	-		IAI47_12565	0.77	-0.7
2,646,810	-		IAI47_12565	0.77	-2.5
2,646,810	-		IAI47_12565	0.77	-0.7
2,646,851	+		IAI47_12565	0.80	-0.7
2,646,851	+		IAI47_12565	0.80	-0.2
2,646,851	+		IAI47_12565	0.80	-2.2
2,646,856	+		IAI47_12565	0.80	-0.6
2,646,857	-		IAI47_12565	0.80	-1.1
2,646,869	+		IAI47_12565	0.81	-2.5
2,646,869	+		IAI47_12565	0.81	-1.4
2,646,870	-		IAI47_12565	0.81	-1.4
2,646,870	-		IAI47_12565	0.81	-1.6
2,646,870	-		IAI47_12565	0.81	-1.2
2,646,872	+		IAI47_12565	0.81	-2.0
2,646,872	+		IAI47_12565	0.81	-1.5
2,646,872	+		IAI47_12565	0.81	-1.2
2,646,872	+		IAI47_12565	0.81	-1.8
2,646,872	+		IAI47_12565	0.81	-0.2
2,646,872	+		IAI47_12565	0.81	-0.1
2,646,872	+		IAI47_12565	0.81	+0.0
2,646,873	-		IAI47_12565	0.81	+0.0
2,646,873	-		IAI47_12565	0.81	+0.2
2,646,873	-		IAI47_12565	0.81	-0.6
2,646,873	-		IAI47_12565	0.81	-2.9
2,646,931	+		IAI47_12565	0.84	-2.3
2,646,931	+		IAI47_12565	0.84	-1.0
2,646,931	+		IAI47_12565	0.84	-2.0
2,646,931	+		IAI47_12565	0.84	+0.0
2,646,931	+		IAI47_12565	0.84	-0.2
2,646,931	+		IAI47_12565	0.84	-0.3
2,646,932	-		IAI47_12565	0.84	-1.6
2,646,932	-		IAI47_12565	0.84	+0.5
2,646,932	-		IAI47_12565	0.84	-2.6
2,646,932	-		IAI47_12565	0.84	-1.8
2,646,932	-		IAI47_12565	0.84	-3.7
2,646,932	-		IAI47_12565	0.84	-1.0
2,646,932	-		IAI47_12565	0.84	-0.8
2,646,935	+		IAI47_12565	0.85	+0.2
2,646,935	+		IAI47_12565	0.85	+1.5
2,646,935	+		IAI47_12565	0.85	-2.5
2,646,936	-		IAI47_12565	0.85	-0.6
2,646,936	-		IAI47_12565	0.85	+0.8
2,646,936	-		IAI47_12565	0.85	+1.0
2,646,936	-		IAI47_12565	0.85	-1.8
2,646,943	+		IAI47_12565	0.85	-2.5
2,646,943	+		IAI47_12565	0.85	+0.0
2,646,943	+		IAI47_12565	0.85	-0.4
2,646,943	+		IAI47_12565	0.85	+0.5
2,646,944	-		IAI47_12565	0.85	-1.3
2,646,944	-		IAI47_12565	0.85	-1.7
2,646,944	-		IAI47_12565	0.85	-0.3
2,647,122	+				-1.4
2,647,123	-				-0.4
2,647,191	+				-2.5
2,647,200	+				-1.4
2,647,207	+				-2.4
2,647,207	+				-1.3
2,647,208	-				-0.8
2,647,236	-				-1.3
2,647,236	-				+1.7
2,647,255	+				-0.6
2,647,255	+				+0.1
2,647,255	+				-0.8
2,647,267	+				+0.5
2,647,267	+				+0.5
2,647,267	+				-0.4
2,647,267	+				-0.7
2,647,268	-				-0.5
2,647,268	-				-0.7
2,647,268	-				+1.6
2,647,321	+				-1.0
2,647,322	-				-1.6
2,647,322	-				+0.9
2,647,322	-				+1.4
2,647,323	+				+0.4
2,647,323	+				+1.5
2,647,323	+				-1.0
2,647,323	+				+0.5
2,647,324	-				+1.0
2,647,324	-				-0.7
2,647,324	-				+0.8
2,647,324	-				-0.8
2,647,449	-				+1.5
2,647,449	-				+2.0
2,647,522	-		IAI47_12570	0.76	+0.9
2,647,607	-				+0.6
2,647,820	-				+0.7
2,647,828	-				-0.3
2,647,876	+				+0.7
2,647,876	+				+0.5
2,647,877	-				-0.4
2,647,889	+				+1.7
2,647,889	+				-2.0
2,647,889	+				+0.5
2,647,889	+				-1.2
2,647,889	+				+1.0
2,647,889	+				+0.1
2,647,890	-				-0.7
2,647,890	-				+1.8
2,647,890	-				+1.9
2,647,893	+				-3.2
2,647,893	+				-1.7
2,647,894	-				+0.7
2,647,894	-				+1.0
2,647,894	-				-0.5
2,647,894	-				-1.0
2,647,905	+				-1.1
2,647,905	+				-0.3
2,647,905	+				-0.1
2,647,905	+				-0.0
2,647,905	+				+0.3
2,647,906	-				-1.7
2,647,906	-				-1.9
2,647,908	+				+2.0
2,647,908	+				-0.5
2,647,908	+				+1.8
2,647,908	+				+1.7
2,647,908	+				+0.9
2,647,908	+				-0.5
2,647,909	-				+2.8
2,647,909	-				+1.4
2,647,909	-				-1.1
2,647,920	+				-0.3
2,647,920	+				-1.6
2,647,996	+				-0.6
2,647,996	+				+0.6
2,647,996	+				-0.1
2,647,996	+				+1.2
2,647,996	+				-1.3
2,647,997	-				+1.9
2,648,000	+		IAI47_12580	0.10	-0.4
2,648,000	+		IAI47_12580	0.10	+1.4
2,648,001	-		IAI47_12580	0.10	-0.3
2,648,001	-		IAI47_12580	0.10	+1.1
2,648,038	+		IAI47_12580	0.16	+1.0
2,648,045	-		IAI47_12580	0.17	+0.7
2,648,105	+		IAI47_12580	0.26	-2.5
2,648,105	+		IAI47_12580	0.26	+0.2
2,648,105	+		IAI47_12580	0.26	-1.7
2,648,106	-		IAI47_12580	0.26	+0.1
2,648,106	-		IAI47_12580	0.26	+0.9
2,648,106	-		IAI47_12580	0.26	-2.6
2,648,106	-		IAI47_12580	0.26	+1.0
2,648,106	-		IAI47_12580	0.26	-0.1
2,648,106	-		IAI47_12580	0.26	+0.1
2,648,121	+		IAI47_12580	0.29	+0.3
2,648,122	-		IAI47_12580	0.29	+0.9
2,648,122	-		IAI47_12580	0.29	+0.4
2,648,122	-		IAI47_12580	0.29	+0.5
2,648,126	+		IAI47_12580	0.29	+2.3
2,648,126	+		IAI47_12580	0.29	-1.6
2,648,126	+		IAI47_12580	0.29	+1.0
2,648,127	-		IAI47_12580	0.30	-0.1
2,648,127	-		IAI47_12580	0.30	+1.0
2,648,137	+		IAI47_12580	0.31	-0.1
2,648,138	-		IAI47_12580	0.31	-1.2
2,648,152	+		IAI47_12580	0.33	+0.6
2,648,152	+		IAI47_12580	0.33	-1.7
2,648,173	+		IAI47_12580	0.37	-0.6
2,648,173	+		IAI47_12580	0.37	+1.4