Strain Fitness in Pantoea sp. MT58 around IAI47_11945

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,527,191	+		IAI47_11940	0.19	+0.3
2,527,191	+		IAI47_11940	0.19	-0.3
2,527,191	+		IAI47_11940	0.19	-0.2
2,527,191	+		IAI47_11940	0.19	-0.2
2,527,191	+		IAI47_11940	0.19	+0.1
2,527,191	+		IAI47_11940	0.19	+0.9
2,527,191	+		IAI47_11940	0.19	+0.9
2,527,192	-		IAI47_11940	0.19	+0.8
2,527,192	-		IAI47_11940	0.19	+2.1
2,527,192	-		IAI47_11940	0.19	-2.1
2,527,192	-		IAI47_11940	0.19	+0.0
2,527,192	-		IAI47_11940	0.19	-3.4
2,527,192	-		IAI47_11940	0.19	-0.4
2,527,192	-		IAI47_11940	0.19	+0.1
2,527,318	+		IAI47_11940	0.30	-2.4
2,527,318	+		IAI47_11940	0.30	+0.7
2,527,318	+		IAI47_11940	0.30	+0.6
2,527,318	+		IAI47_11940	0.30	-0.9
2,527,319	-		IAI47_11940	0.30	-1.1
2,527,365	+		IAI47_11940	0.34	-0.7
2,527,365	+		IAI47_11940	0.34	+1.0
2,527,365	+		IAI47_11940	0.34	+0.2
2,527,365	+		IAI47_11940	0.34	-0.2
2,527,365	+		IAI47_11940	0.34	+1.2
2,527,366	-		IAI47_11940	0.34	+1.0
2,527,366	-		IAI47_11940	0.34	+1.1
2,527,366	-		IAI47_11940	0.34	+2.4
2,527,366	-		IAI47_11940	0.34	+1.3
2,527,366	-		IAI47_11940	0.34	+0.9
2,527,366	-		IAI47_11940	0.34	-1.8
2,527,366	-		IAI47_11940	0.34	-0.5
2,527,372	+		IAI47_11940	0.35	-0.6
2,527,372	+		IAI47_11940	0.35	+0.5
2,527,372	+		IAI47_11940	0.35	-0.2
2,527,372	+		IAI47_11940	0.35	+1.5
2,527,373	-		IAI47_11940	0.35	+0.6
2,527,373	-		IAI47_11940	0.35	-2.5
2,527,376	+		IAI47_11940	0.35	-0.7
2,527,376	+		IAI47_11940	0.35	-2.0
2,527,376	+		IAI47_11940	0.35	-1.6
2,527,376	+		IAI47_11940	0.35	+2.0
2,527,377	-		IAI47_11940	0.35	+0.3
2,527,518	+		IAI47_11940	0.48	-1.3
2,527,518	+		IAI47_11940	0.48	-3.7
2,527,518	+		IAI47_11940	0.48	-0.4
2,527,518	+		IAI47_11940	0.48	-1.6
2,527,518	+		IAI47_11940	0.48	-0.9
2,527,518	+		IAI47_11940	0.48	+1.1
2,527,519	-		IAI47_11940	0.48	-0.2
2,527,519	-		IAI47_11940	0.48	+1.2
2,527,519	-		IAI47_11940	0.48	-0.7
2,527,519	-		IAI47_11940	0.48	+0.9
2,527,519	-		IAI47_11940	0.48	-1.9
2,527,519	-		IAI47_11940	0.48	+0.6
2,527,548	+		IAI47_11940	0.50	-1.3
2,527,548	+		IAI47_11940	0.50	+0.8
2,527,572	+		IAI47_11940	0.52	-1.6
2,527,573	-		IAI47_11940	0.52	-1.1
2,527,573	-		IAI47_11940	0.52	+1.2
2,527,573	-		IAI47_11940	0.52	+1.3
2,527,609	+		IAI47_11940	0.56	-2.4
2,527,609	+		IAI47_11940	0.56	+1.0
2,527,610	-		IAI47_11940	0.56	-1.7
2,527,610	-		IAI47_11940	0.56	-0.5
2,527,610	-		IAI47_11940	0.56	+0.2
2,527,610	-		IAI47_11940	0.56	+2.1
2,527,613	+		IAI47_11940	0.56	-2.3
2,527,629	+		IAI47_11940	0.57	-1.7
2,527,664	+		IAI47_11940	0.61	-2.6
2,527,664	+		IAI47_11940	0.61	-1.4
2,527,665	-		IAI47_11940	0.61	+0.5
2,527,842	+		IAI47_11940	0.76	-0.1
2,527,860	+		IAI47_11940	0.78	-0.8
2,527,897	+		IAI47_11940	0.81	+1.4
2,527,898	-		IAI47_11940	0.81	-0.7
2,527,898	-		IAI47_11940	0.81	-1.7
2,527,935	+		IAI47_11940	0.85	+0.7
2,527,935	+		IAI47_11940	0.85	-1.1
2,527,935	+		IAI47_11940	0.85	+0.3
2,527,935	+		IAI47_11940	0.85	-1.1
2,527,936	-		IAI47_11940	0.85	-2.3
2,527,937	+		IAI47_11940	0.85	-1.9
2,527,938	-		IAI47_11940	0.85	-0.2
2,527,999	-				+0.0
2,528,082	+				-0.1
2,528,083	-				-1.4
2,528,107	-				-1.0
2,528,176	+				+1.9
2,528,177	-				-1.3
2,528,180	+				-0.1
2,528,180	+				-2.0
2,528,181	-				+0.4
2,528,181	-				+0.8
2,528,244	+				+1.9
2,528,244	+				+2.6
2,528,276	+				+0.9
2,528,276	+				+1.3
2,528,277	+				+2.0
2,528,277	-				+0.9
2,528,277	-				+2.1
2,528,277	-				+3.4
2,528,277	-				+1.3
2,528,280	+				+1.1
2,528,280	+				-0.1
2,528,280	+				+0.1
2,528,280	+				+0.8
2,528,280	+				+1.5
2,528,280	+				+1.4
2,528,280	+				+1.1
2,528,280	+				-0.3
2,528,280	+				+2.5
2,528,281	-				+1.8
2,528,281	-				+2.0
2,528,281	-				+0.5
2,528,281	-				+1.8
2,528,281	-				+1.7
2,528,282	+				+1.6
2,528,282	+				+1.8
2,528,282	+				+0.7
2,528,283	-				+1.9
2,528,344	-		IAI47_11945	0.13	+1.2
2,528,344	-		IAI47_11945	0.13	-0.1
2,528,398	+		IAI47_11945	0.18	-0.1
2,528,454	-		IAI47_11945	0.22	+1.1
2,528,454	-		IAI47_11945	0.22	+1.3
2,528,454	-		IAI47_11945	0.22	+1.3
2,528,460	+		IAI47_11945	0.23	+1.5
2,528,461	-		IAI47_11945	0.23	+1.7
2,528,538	+		IAI47_11945	0.29	+1.0
2,528,577	+		IAI47_11945	0.32	+0.4
2,528,577	+		IAI47_11945	0.32	+1.9
2,528,577	+		IAI47_11945	0.32	+1.6
2,528,577	+		IAI47_11945	0.32	+0.9
2,528,578	-		IAI47_11945	0.32	-0.1
2,528,579	+		IAI47_11945	0.33	+0.8
2,528,579	+		IAI47_11945	0.33	+0.5
2,528,579	+		IAI47_11945	0.33	+1.1
2,528,579	+		IAI47_11945	0.33	+1.1
2,528,579	+		IAI47_11945	0.33	+1.6
2,528,580	-		IAI47_11945	0.33	+1.8
2,528,580	-		IAI47_11945	0.33	+1.6
2,528,580	-		IAI47_11945	0.33	+2.3
2,528,580	-		IAI47_11945	0.33	+1.1
2,528,580	-		IAI47_11945	0.33	+2.4
2,528,580	-		IAI47_11945	0.33	+2.2
2,528,580	-		IAI47_11945	0.33	+0.3
2,528,580	-		IAI47_11945	0.33	+1.6
2,528,580	-		IAI47_11945	0.33	+2.9
2,528,580	-		IAI47_11945	0.33	-0.1
2,528,599	+		IAI47_11945	0.34	+1.2
2,528,599	+		IAI47_11945	0.34	+0.1
2,528,599	+		IAI47_11945	0.34	-2.2
2,528,600	-		IAI47_11945	0.34	+0.3
2,528,600	-		IAI47_11945	0.34	+1.1
2,528,600	-		IAI47_11945	0.34	+0.5
2,528,600	-		IAI47_11945	0.34	+3.8
2,528,600	-		IAI47_11945	0.34	+4.0
2,528,627	+		IAI47_11945	0.36	-0.3
2,528,627	+		IAI47_11945	0.36	-0.2
2,528,627	+		IAI47_11945	0.36	+1.9
2,528,627	+		IAI47_11945	0.36	+2.1
2,528,628	-		IAI47_11945	0.37	+0.3
2,528,628	-		IAI47_11945	0.37	+1.6
2,528,628	-		IAI47_11945	0.37	+2.7
2,528,628	-		IAI47_11945	0.37	+1.3
2,528,628	-		IAI47_11945	0.37	+2.7
2,528,628	-		IAI47_11945	0.37	+0.4
2,528,628	-		IAI47_11945	0.37	+2.6
2,528,628	-		IAI47_11945	0.37	+0.6
2,528,628	-		IAI47_11945	0.37	+3.4
2,528,639	+		IAI47_11945	0.37	-0.6
2,528,640	-		IAI47_11945	0.37	+0.5
2,528,640	-		IAI47_11945	0.37	+0.1
2,528,650	-		IAI47_11945	0.38	+0.3
2,528,650	-		IAI47_11945	0.38	+0.6
2,528,650	-		IAI47_11945	0.38	+1.9
2,528,650	-		IAI47_11945	0.38	+1.3
2,528,651	+		IAI47_11945	0.38	-1.0
2,528,652	-		IAI47_11945	0.38	+0.3
2,528,652	-		IAI47_11945	0.38	+0.7
2,528,652	-		IAI47_11945	0.38	-0.8
2,528,652	-		IAI47_11945	0.38	+2.1
2,528,748	+		IAI47_11945	0.46	-0.4
2,528,749	-		IAI47_11945	0.46	+3.4
2,528,749	-		IAI47_11945	0.46	+3.2
2,528,795	+		IAI47_11945	0.50	+2.7
2,528,831	+		IAI47_11945	0.53	+1.9
2,528,831	+		IAI47_11945	0.53	+1.3
2,528,831	+		IAI47_11945	0.53	+1.9
2,528,832	-		IAI47_11945	0.53	+1.9
2,528,832	-		IAI47_11945	0.53	+2.2
2,528,832	-		IAI47_11945	0.53	+3.8
2,529,021	+		IAI47_11945	0.68	-0.9
2,529,021	+		IAI47_11945	0.68	+1.0
2,529,022	-		IAI47_11945	0.69	+0.9
2,529,050	-		IAI47_11945	0.71	+1.4
2,529,063	+		IAI47_11945	0.72	+0.3
2,529,063	+		IAI47_11945	0.72	+2.2
2,529,064	-		IAI47_11945	0.72	+0.9
2,529,090	+		IAI47_11945	0.74	+3.2
2,529,168	+		IAI47_11945	0.80	+3.1
2,529,168	+		IAI47_11945	0.80	+1.2
2,529,168	+		IAI47_11945	0.80	+2.9
2,529,168	+		IAI47_11945	0.80	+2.1
2,529,169	-		IAI47_11945	0.80	+2.0
2,529,169	-		IAI47_11945	0.80	+0.7
2,529,169	-		IAI47_11945	0.80	+0.4
2,529,169	-		IAI47_11945	0.80	+1.4
2,529,169	-		IAI47_11945	0.80	+2.0
2,529,183	+		IAI47_11945	0.82	+2.4
2,529,253	+		IAI47_11945	0.87	+1.3
2,529,354	+				+1.4
2,529,355	-				+2.3
2,529,377	+				+1.5
2,529,378	-				+0.4
2,529,378	-				-1.6
2,529,378	-				+2.4
2,529,382	+				+1.3
2,529,382	+				+1.7
2,529,383	-				+0.6
2,529,383	-				+2.3
2,529,383	-				+2.4
2,529,397	+				+1.6
2,529,397	+				+1.8
2,529,397	+				-1.0
2,529,398	-				+1.8
2,529,398	-				+2.8
2,529,398	-				+2.7
2,529,409	-				+1.5
2,529,420	+				+3.7
2,529,420	+				+1.3
2,529,420	+				+1.0
2,529,421	-				+0.9
2,529,439	+				-0.3
2,529,439	+				+3.3
2,529,440	-				+1.6
2,529,440	-				-0.6
2,529,440	-				-0.5
2,529,440	-				-0.4
2,529,440	-				+1.1
2,529,458	+				+1.5
2,529,460	+				-0.4
2,529,460	+				+0.1
2,529,460	+				+1.2
2,529,460	+				+0.6
2,529,461	-				-1.9
2,529,461	-				+2.6
2,529,461	-				+2.7
2,529,461	-				-1.3
2,529,471	-				-1.1
2,529,471	-				-1.8
2,529,492	-				-2.9
2,529,521	+				+1.0
2,529,521	+				-1.7
2,529,521	+				+1.2
2,529,521	+				+1.7
2,529,521	+				+1.1
2,529,521	+				+1.1
2,529,532	+				-0.0
2,529,532	+				+1.7
2,529,532	+				-1.5
2,529,533	-				-0.7
2,529,541	+				+0.4
2,529,542	-				+1.8
2,529,544	+				-2.4
2,529,544	+				+0.8
2,529,545	-				+1.4
2,529,561	-				-0.7
2,529,561	-				-3.1
2,529,561	-				-1.5
2,529,576	-				-2.6
2,529,576	-				-0.4
2,529,576	-				-1.3
2,529,578	+				-0.9
2,529,702	-				-2.8
2,529,706	+				-0.3
2,529,706	+				+1.3
2,529,706	+				-1.0
2,529,707	-				+0.4
2,529,707	-				+0.1
2,529,707	-				+1.0
2,529,771	+				-0.4
2,529,771	+				+1.6
2,529,771	+				-0.1
2,529,771	+				+0.9
2,529,772	-				+0.8
2,529,772	-				+0.9
2,529,772	-				-0.6
2,529,772	-				+0.1
2,529,858	+				+2.4
2,529,858	+				-2.4
2,529,875	-				+2.6
2,529,889	+				-1.5
2,529,889	+				-1.5
2,529,890	-				+2.4
2,529,890	-				-1.4
2,529,893	+				-0.4
2,529,893	+				-2.3
2,529,894	-				-1.1
2,529,894	-				-0.7
2,529,894	-				+0.7
2,529,894	-				+1.6
2,529,894	-				-1.3
2,529,894	-				-0.7
2,529,894	-				+0.5
2,529,894	-				+1.2
2,529,896	-				+0.7
2,529,896	-				-0.1
2,529,896	-				+1.5
2,529,896	-				-0.7
2,529,914	+				+2.2
2,529,914	+				+0.8
2,529,914	+				+0.1
2,529,914	+				-0.1
2,529,915	-				-1.0
2,529,915	-				-0.4
2,529,952	+				+0.3
2,529,952	+				-0.9
2,529,952	+				+0.3
2,529,952	+				-0.4
2,529,953	-				+1.3
2,529,953	-				+0.6
2,529,953	-				-2.6
2,529,953	-				+1.3
2,529,953	-				+0.6
2,530,010	+		IAI47_11950	0.15	+0.6
2,530,010	+		IAI47_11950	0.15	+2.0
2,530,011	-		IAI47_11950	0.15	+1.3
2,530,011	-		IAI47_11950	0.15	+0.4
2,530,085	+		IAI47_11950	0.24	+1.3
2,530,085	+		IAI47_11950	0.24	-1.4
2,530,085	+		IAI47_11950	0.24	-1.0
2,530,085	-		IAI47_11950	0.24	+0.3
2,530,086	-		IAI47_11950	0.24	+1.1
2,530,086	-		IAI47_11950	0.24	-0.4
2,530,086	-		IAI47_11950	0.24	-2.6
2,530,086	-		IAI47_11950	0.24	+0.1
2,530,090	+		IAI47_11950	0.24	+1.9
2,530,091	-		IAI47_11950	0.24	-0.3
2,530,115	-		IAI47_11950	0.27	-1.2
2,530,214	+		IAI47_11950	0.39	+1.1
2,530,215	-		IAI47_11950	0.39	-0.9
2,530,356	+		IAI47_11950	0.56	-0.1