Strain Fitness in Pantoea sp. MT58 around IAI47_09325

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,966,266	+		IAI47_09320	0.55	-1.5
1,966,267	-		IAI47_09320	0.55	-0.8
1,966,267	-		IAI47_09320	0.55	-0.5
1,966,355	+		IAI47_09320	0.60	-1.0
1,966,356	-		IAI47_09320	0.60	-0.6
1,966,358	+		IAI47_09320	0.60	-1.5
1,966,359	-		IAI47_09320	0.60	+1.2
1,966,372	+		IAI47_09320	0.61	+0.9
1,966,372	+		IAI47_09320	0.61	+0.6
1,966,372	+		IAI47_09320	0.61	-1.2
1,966,372	+		IAI47_09320	0.61	-2.1
1,966,372	+		IAI47_09320	0.61	+0.3
1,966,373	-		IAI47_09320	0.61	-1.8
1,966,379	+		IAI47_09320	0.61	-2.1
1,966,403	+		IAI47_09320	0.62	-0.0
1,966,403	+		IAI47_09320	0.62	-0.2
1,966,404	-		IAI47_09320	0.62	-0.6
1,966,429	+		IAI47_09320	0.64	-0.7
1,966,430	-		IAI47_09320	0.64	+1.3
1,966,430	-		IAI47_09320	0.64	+0.4
1,966,454	+		IAI47_09320	0.65	-2.2
1,966,454	+		IAI47_09320	0.65	-0.0
1,966,493	-		IAI47_09320	0.67	-1.8
1,966,493	-		IAI47_09320	0.67	-1.5
1,966,509	-		IAI47_09320	0.68	-2.8
1,966,680	-		IAI47_09320	0.77	-1.0
1,966,680	-		IAI47_09320	0.77	+0.5
1,966,689	-		IAI47_09320	0.77	-1.5
1,966,700	-		IAI47_09320	0.78	-1.6
1,966,700	-		IAI47_09320	0.78	+0.0
1,966,700	-		IAI47_09320	0.78	+0.7
1,966,719	+		IAI47_09320	0.79	-1.0
1,966,720	-		IAI47_09320	0.79	-1.9
1,966,720	-		IAI47_09320	0.79	-0.8
1,966,743	+		IAI47_09320	0.80	+1.4
1,966,743	+		IAI47_09320	0.80	+1.4
1,966,949	+				-1.5
1,966,949	+				-0.6
1,966,952	+				-0.5
1,966,952	+				-2.0
1,966,953	-				-0.8
1,967,051	+				-2.2
1,967,130	-				-2.3
1,967,169	+				-0.7
1,967,170	-				-0.9
1,967,302	-				-2.2
1,967,369	+				-0.2
1,967,369	+				-0.9
1,967,369	+				+2.3
1,967,369	+				+0.7
1,967,370	-				-0.0
1,967,370	-				-2.2
1,967,370	-				-1.4
1,967,370	-				-1.4
1,967,394	+				-2.3
1,967,395	-				-1.0
1,967,395	-				+0.6
1,967,397	+				-1.5
1,967,397	+				+0.2
1,967,397	+				+0.1
1,967,397	+				+0.2
1,967,399	+				-0.7
1,967,400	-				-0.1
1,967,434	-				-2.2
1,967,434	-				-1.5
1,967,434	-				-0.4
1,967,434	-				-0.9
1,967,499	+		IAI47_09325	0.11	-1.7
1,967,499	+		IAI47_09325	0.11	-1.9
1,967,500	-		IAI47_09325	0.11	+0.3
1,967,500	-		IAI47_09325	0.11	-1.5
1,967,500	-		IAI47_09325	0.11	-0.0
1,967,582	+		IAI47_09325	0.15	-0.2
1,967,583	-		IAI47_09325	0.15	-0.2
1,967,583	-		IAI47_09325	0.15	-1.0
1,967,583	-		IAI47_09325	0.15	-0.3
1,967,583	-		IAI47_09325	0.15	+1.1
1,967,583	-		IAI47_09325	0.15	+0.3
1,967,694	+		IAI47_09325	0.20	+1.1
1,967,729	+		IAI47_09325	0.21	-1.6
1,967,730	-		IAI47_09325	0.21	-1.6
1,967,730	-		IAI47_09325	0.21	-0.9
1,967,793	+		IAI47_09325	0.24	-0.9
1,967,794	-		IAI47_09325	0.24	-1.2
1,967,813	+		IAI47_09325	0.25	+0.5
1,967,813	+		IAI47_09325	0.25	-0.2
1,967,814	-		IAI47_09325	0.25	-0.0
1,967,814	-		IAI47_09325	0.25	+0.1
1,967,814	-		IAI47_09325	0.25	-1.5
1,967,814	-		IAI47_09325	0.25	-2.6
1,967,919	+		IAI47_09325	0.29	-2.3
1,967,949	+		IAI47_09325	0.31	+0.3
1,967,950	-		IAI47_09325	0.31	-0.9
1,967,967	+		IAI47_09325	0.31	+0.3
1,967,970	+		IAI47_09325	0.32	-0.3
1,967,971	-		IAI47_09325	0.32	-0.7
1,967,971	-		IAI47_09325	0.32	-0.7
1,968,072	+		IAI47_09325	0.36	-1.2
1,968,073	-		IAI47_09325	0.36	+0.7
1,968,078	+		IAI47_09325	0.36	-0.8
1,968,078	+		IAI47_09325	0.36	-0.3
1,968,079	-		IAI47_09325	0.36	-3.2
1,968,079	-		IAI47_09325	0.36	+1.3
1,968,079	-		IAI47_09325	0.36	-2.1
1,968,079	-		IAI47_09325	0.36	-0.5
1,968,079	-		IAI47_09325	0.36	-0.7
1,968,079	-		IAI47_09325	0.36	+1.8
1,968,217	-		IAI47_09325	0.42	-0.6
1,968,217	-		IAI47_09325	0.42	-0.7
1,968,453	+		IAI47_09325	0.53	+0.6
1,968,479	+		IAI47_09325	0.54	+1.0
1,968,552	+		IAI47_09325	0.57	-1.0
1,968,569	+		IAI47_09325	0.58	+0.7
1,968,570	-		IAI47_09325	0.58	+1.8
1,968,570	-		IAI47_09325	0.58	-0.0
1,968,591	+		IAI47_09325	0.59	+0.5
1,968,601	-		IAI47_09325	0.59	-1.4
1,968,601	-		IAI47_09325	0.59	+0.7
1,968,693	+		IAI47_09325	0.63	-1.4
1,968,693	+		IAI47_09325	0.63	-1.2
1,968,716	+		IAI47_09325	0.64	-1.5
1,968,717	-		IAI47_09325	0.64	-0.4
1,968,717	-		IAI47_09325	0.64	-1.6
1,968,717	-		IAI47_09325	0.64	-2.4
1,968,719	+		IAI47_09325	0.64	-2.0
1,968,719	+		IAI47_09325	0.64	-1.7
1,968,719	+		IAI47_09325	0.64	-0.4
1,968,720	-		IAI47_09325	0.64	+0.5
1,968,736	-		IAI47_09325	0.65	-1.7
1,968,736	-		IAI47_09325	0.65	-0.0
1,968,810	+		IAI47_09325	0.68	-1.2
1,968,813	+		IAI47_09325	0.68	-1.6
1,968,813	+		IAI47_09325	0.68	-1.0
1,968,813	+		IAI47_09325	0.68	-0.1
1,968,813	+		IAI47_09325	0.68	-0.4
1,968,814	-		IAI47_09325	0.68	-0.7
1,968,814	-		IAI47_09325	0.68	-0.6
1,968,814	-		IAI47_09325	0.68	-0.1
1,968,814	-		IAI47_09325	0.68	+1.1
1,968,814	-		IAI47_09325	0.68	+0.1
1,968,814	-		IAI47_09325	0.68	-1.5
1,968,867	+		IAI47_09325	0.71	-1.5
1,968,867	+		IAI47_09325	0.71	+0.1
1,968,867	+		IAI47_09325	0.71	+0.2
1,968,868	-		IAI47_09325	0.71	-2.4
1,968,868	-		IAI47_09325	0.71	-0.7
1,968,868	-		IAI47_09325	0.71	-2.1
1,968,868	-		IAI47_09325	0.71	-0.6
1,968,951	+		IAI47_09325	0.74	-1.8
1,968,963	+		IAI47_09325	0.75	+1.9
1,969,002	+		IAI47_09325	0.76	-0.0
1,969,002	+		IAI47_09325	0.76	+0.3
1,969,003	-		IAI47_09325	0.76	-1.6
1,969,023	+		IAI47_09325	0.77	-2.3
1,969,023	+		IAI47_09325	0.77	-1.6
1,969,023	+		IAI47_09325	0.77	+1.7
1,969,024	-		IAI47_09325	0.77	+0.2
1,969,055	+		IAI47_09325	0.79	-1.3
1,969,055	+		IAI47_09325	0.79	+0.8
1,969,056	-		IAI47_09325	0.79	-1.6
1,969,056	-		IAI47_09325	0.79	+0.6
1,969,094	+		IAI47_09325	0.80	-0.9
1,969,094	+		IAI47_09325	0.80	-1.3
1,969,094	+		IAI47_09325	0.80	-2.5
1,969,094	+		IAI47_09325	0.80	-1.9
1,969,095	-		IAI47_09325	0.80	-2.6
1,969,095	-		IAI47_09325	0.80	-1.8
1,969,095	-		IAI47_09325	0.80	-1.6
1,969,095	-		IAI47_09325	0.80	-1.8
1,969,095	-		IAI47_09325	0.80	-1.6
1,969,095	-		IAI47_09325	0.80	-0.4
1,969,095	-		IAI47_09325	0.80	-0.1
1,969,095	-		IAI47_09325	0.80	+0.5
1,969,178	+		IAI47_09325	0.84	-1.9
1,969,178	+		IAI47_09325	0.84	-0.0
1,969,178	+		IAI47_09325	0.84	-0.9
1,969,179	-		IAI47_09325	0.84	+1.7
1,969,179	-		IAI47_09325	0.84	-1.4
1,969,179	-		IAI47_09325	0.84	-1.1
1,969,179	-		IAI47_09325	0.84	-0.3
1,969,199	+		IAI47_09325	0.85	-1.1
1,969,200	-		IAI47_09325	0.85	-2.1
1,969,200	-		IAI47_09325	0.85	-1.5
1,969,200	-		IAI47_09325	0.85	-1.6
1,969,200	-		IAI47_09325	0.85	+0.9
1,969,230	-		IAI47_09325	0.86	+0.6
1,969,241	+		IAI47_09325	0.87	+1.3
1,969,242	-		IAI47_09325	0.87	+0.4
1,969,254	+		IAI47_09325	0.87	-1.6
1,969,255	-		IAI47_09325	0.87	-1.0
1,969,256	+		IAI47_09325	0.87	-1.9
1,969,256	+		IAI47_09325	0.87	-0.4
1,969,256	+		IAI47_09325	0.87	+1.2
1,969,256	+		IAI47_09325	0.87	-1.4
1,969,256	+		IAI47_09325	0.87	-0.7
1,969,257	-		IAI47_09325	0.87	-1.6
1,969,257	-		IAI47_09325	0.87	-1.2
1,969,257	-		IAI47_09325	0.87	-2.2
1,969,257	-		IAI47_09325	0.87	-1.3
1,969,360	-				-3.3
1,969,413	+				+2.4
1,969,413	+				-0.4
1,969,413	+				-0.3
1,969,562	+				-0.5
1,969,562	+				-2.9
1,969,563	-				-0.3
1,969,563	-				-1.5
1,969,563	-				-0.2
1,969,563	-				-0.4
1,969,563	-				+1.0
1,969,563	-				-0.7
1,969,563	-				-0.5
1,969,564	+				-1.9
1,969,564	+				-0.5
1,969,564	+				-0.0
1,969,565	-				+2.3
1,969,565	-				-0.7
1,969,565	-				+1.0
1,969,567	+				-0.3
1,969,567	+				-2.1
1,969,568	-				-0.2
1,969,568	-				-2.1
1,969,568	-				+0.1
1,969,568	-				+2.3
1,969,568	-				-0.9
1,969,574	+				-0.9
1,969,591	+				-1.6
1,969,600	-				-0.6
1,969,600	-				+2.9
1,969,601	+				-0.9
1,969,601	+				-1.4
1,969,601	+				-1.5
1,969,602	-				+0.8
1,969,602	-				+0.5
1,969,602	-				-1.2
1,969,602	-				+0.4
1,969,630	+				-1.3
1,969,630	+				-0.9
1,969,631	-				+0.3
1,969,631	-				+0.4
1,969,636	+				-1.2
1,969,637	-				+2.0
1,969,637	-				-1.3
1,969,638	+				-0.0
1,969,638	+				+0.4
1,969,638	+				-2.1
1,969,638	+				+1.3
1,969,638	+				+0.3
1,969,638	+				-0.3
1,969,638	+				+0.3
1,969,639	-				+0.8
1,969,639	-				-2.9
1,969,639	-				-2.9
1,969,639	-				-1.2
1,969,639	-				-0.5
1,969,639	-				-0.3
1,969,639	-				-0.3
1,969,639	-				-0.6
1,969,639	-				-0.6
1,969,639	-				-3.5
1,969,639	-				+1.3
1,969,647	+				-1.8
1,969,648	-				-1.8
1,969,648	-				-1.2
1,969,660	+				+0.6
1,969,660	+				+0.5
1,969,660	+				-0.3
1,969,660	+				-0.0
1,969,661	-				+1.6
1,969,661	-				+0.8
1,969,661	-				+1.5
1,969,672	-				-1.6
1,969,722	-				+0.1
1,969,730	+				-2.8
1,969,730	+				+0.9
1,969,771	+				+0.2
1,969,771	+				-0.8
1,969,771	+				+0.6
1,969,771	+				+0.1
1,969,771	+				+1.9
1,969,772	-				+1.0
1,969,772	-				-0.1
1,969,772	-				-0.4
1,969,772	-				-2.2
1,969,772	-				-0.6
1,969,963	+				-0.2
1,969,963	+				+1.2
1,969,963	+				+0.5
1,969,964	-				-0.2
1,970,094	+		IAI47_09330	0.18	-1.1
1,970,094	+		IAI47_09330	0.18	+0.5
1,970,094	+		IAI47_09330	0.18	+0.3
1,970,094	+		IAI47_09330	0.18	-0.5
1,970,145	-		IAI47_09330	0.21	-1.5
1,970,223	+		IAI47_09330	0.26	-0.0
1,970,224	-		IAI47_09330	0.26	+0.2
1,970,224	-		IAI47_09330	0.26	+0.6
1,970,224	-		IAI47_09330	0.26	-0.2
1,970,224	-		IAI47_09330	0.26	+0.1
1,970,224	-		IAI47_09330	0.26	+0.8
1,970,224	-		IAI47_09330	0.26	-1.4
1,970,224	-		IAI47_09330	0.26	+0.1
1,970,224	-		IAI47_09330	0.26	+1.2
1,970,250	+		IAI47_09330	0.28	+1.7
1,970,250	+		IAI47_09330	0.28	-0.3
1,970,251	-		IAI47_09330	0.28	+0.9
1,970,251	-		IAI47_09330	0.28	-1.5
1,970,317	-		IAI47_09330	0.32	-0.5
1,970,378	+		IAI47_09330	0.36	+0.9
1,970,379	-		IAI47_09330	0.36	-0.0
1,970,472	-		IAI47_09330	0.42	-2.2
1,970,472	-		IAI47_09330	0.42	-2.5
1,970,484	+		IAI47_09330	0.43	-0.8
1,970,485	-		IAI47_09330	0.43	-0.6
1,970,485	-		IAI47_09330	0.43	+0.9
1,970,485	-		IAI47_09330	0.43	-0.9
1,970,485	-		IAI47_09330	0.43	-1.2
1,970,543	+		IAI47_09330	0.46	+1.0
1,970,543	+		IAI47_09330	0.46	-0.2
1,970,543	+		IAI47_09330	0.46	-1.2
1,970,544	-		IAI47_09330	0.47	-0.3
1,970,544	-		IAI47_09330	0.47	-0.9
1,970,544	-		IAI47_09330	0.47	+1.1
1,970,544	-		IAI47_09330	0.47	-1.2